ID D83409; SV 1; linear; genomic RNA; STD; VRL; 3516 BP. XX AC D83409; XX DT 22-MAR-1997 (Rel. 51, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 5) XX DE Barley mild mosaic virus complete sequence of genomic RNA2, complete cds. XX KW polyprotein precursor. XX OS Barley mild mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-3516 RA Kashiwazaki S.; RT ; RL Submitted (06-FEB-1996) to the INSDC. RL Satoshi Kashiwazaki, National Agriculture Research Center, Department of RL Plant Protection; 3-1-1 Kannondai, Tsukuba, Ibaraki 305-8666, Japan RL (E-mail:skashiwa@narc.affrc.go.jp, Tel:81-298-38-8932, Fax:81-298-38-8929) XX RN [2] RP 1-3516 RA Kashiwazaki S.; RT "The complete nucleotide sequence and genome organization of barley mild RT mosaic virus (Na1 strain)"; RL Unpublished. XX RN [3] RP 1-3516 RX DOI; 10.1007/BF01718216. RX PUBMED; 8973524. RA Kashiwazaki S.; RT "The complete nucleotide sequence and genome organization of barley mild RT mosaic virus (Na1 strain)"; RL Arch. Virol. 141(11):2077-2089(1996). XX DR MD5; 8e3c77bf48716bc37d22db0f260e22a6. XX FH Key Location/Qualifiers FH FT source 1..3516 FT /organism="Barley mild mosaic virus" FT /segment="2" FT /strain="Na1" FT /mol_type="genomic RNA" FT /clone="Na1SK5" FT /db_xref="taxon:12466" FT 5'UTR 1..141 FT CDS 142..2817 FT /codon_start=1 FT /product="polyprotein precursor" FT /db_xref="GOA:P89684" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR036417" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/Swiss-Prot:P89684" FT /protein_id="BAA18954.1" FT /translation="MMMNSTIRQGWQQVLKRFSIPASGDRLIISNPTDQPIGLFGAFDT FT SLQTLSQVGDDPEVLKQKIHIPTHLDIASALEASPRSFPWIFLTNSFCTFGGSIHAQNL FT QAFATAEFKSGFCYMNLLVPLSFDIIDAHADSFRVFVEQLPDMLGAYPSLSMVLNVMLH FT AATRFPEIVSSPVPTIAFDAESLQFHVTDKRGVPGMWNILKAGRVYELLSLAADGVGCE FT YMLYPVGAAPQYSFWKKSMDHFTSDRFVEFLAMQNLLASALEQDYTTHDALDALLAALQ FT NAGYTNVVARERRFPNGHDPSTVWLNLSEAPISEKLTDLKRYLLVGHRSDDTADITHNV FT HQYVFEVLKTMSVQFSKRTNAYNRARFEVNHKVIWNAEYGRGPQQNAELEALVLFLNRQ FT SLEIENILHRTTSPVVVTNWQPDVPTAAPEVSEGEPTHAVATPMTEAPAHATPVEVVNL FT PSTRSYWAETLVGVLTAVLGTIFALLTRALIRAKRLRRKPTFPWVTLDSGDEDDDHSGG FT GGGGPQTPGGQPPASPAHRTHQSRLSVQDIASDTSLLSVDLDEDTLSQYDETFQRIRRA FT LFETSFTDILQNSARWISALEAMALADGNAPYTLLAQYLNGIEEAYTSFRNTGHVSRAT FT LSSFFALEDSLRAAGIAFGATTPTQTIQNQFADSPARRWKTRFEQIACELGDASIKSLA FT DLADIIDTERERSDLTQFDVLAASSISSLCRAVRIISDTTDPDAQLALVENATAMQNNI FT NAILGTNVSIPFLSATRRLLVTRRIQQAGAENRSGATPETIQQLADAELIVSEANMFNE FT MATSQRDIANATQEATIREHVLSPVNALANVGMAAAFFRSGGMRSRALHPAMPTMPGVS FT AATGRPIFQAFRGRGHRLNR" FT 3'UTR 2815..3516 FT regulatory 3217..3221 FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 3516 BP; 922 A; 1008 C; 781 G; 805 T; 0 other; aaaaataaaa caaaactaca acccaataca aacaacgaac aacaatcaaa caaacaaaca 60 cacaccaaac acacacagca aaccacagtt tacagctgcg aaacgcgaac tcacacgctg 120 caatctcaga attgaacaga gatgatgatg aactccacga ttcgtcaagg atggcagcaa 180 gtgctcaaac gcttttccat cccagcatcc ggagataggc tcatcatttc caaccccact 240 gatcaaccca taggtctttt tggagcattc gacacatcgt tgcaaacact ctcgcaggtt 300 ggtgatgacc ccgaggtttt gaagcagaaa attcacatcc ccacgcacct ggacatagca 360 tccgcactcg aagccagccc ccggtccttt ccatggattt tccttacaaa ctccttctgc 420 acctttggtg gttccataca cgcccagaat ctccaggcct tcgcaaccgc tgagttcaag 480 agcgggttct gttacatgaa cctgctggtg ccgctcagtt tcgacatcat tgatgcgcac 540 gctgattcct tccgtgtctt tgttgaacag ctccccgaca tgctaggtgc ctacccttcg 600 ctcagcatgg tgctaaacgt catgttgcac gcagccacgc gcttccccga gattgtgagc 660 tcccccgttc caaccatagc attcgacgcc gaatcactgc agttccacgt gactgataaa 720 cggggcgttc ctggcatgtg gaacatactc aaagccggcc gcgtatacga gcttctctcg 780 ctcgcagcgg atggcgtggg ttgtgagtac atgctgtatc ccgttggcgc tgcaccccag 840 tactccttct ggaagaaatc catggaccat ttcacatctg accggttcgt tgaatttcta 900 gctatgcaga acctgcttgc tagtgcgctt gaacaggatt acacaacaca tgacgcactt 960 gatgcattac tagcagctct acagaacgca ggctacacaa atgttgtcgc aagggaaaga 1020 agattcccaa atggtcacga ccctagcact gtctggctaa acctaagtga ggcccccatt 1080 tcggagaagc taactgatct caaacgatac ctcttagttg gccacagaag cgacgacact 1140 gcagacataa cacacaacgt acaccagtac gtttttgagg ttcttaaaac catgtctgtt 1200 cagttcagca aaagaacgaa cgcttacaac cgcgcccgtt tcgaggtcaa ccataaggtg 1260 atttggaatg cagagtatgg acgcggtccc caacaaaacg ccgagcttga agcccttgtt 1320 ttgtttctta ataggcaatc gctggagatc gagaacattc tgcacaggac aaccagtccc 1380 gttgtcgtaa cgaactggca acctgatgtt cccactgcag cacctgaagt cagcgaggga 1440 gaacccacac acgcagtcgc aacacctatg actgaagcgc cagcacacgc aactcctgtt 1500 gaagttgtga atctgccatc aacacgctct tattgggccg aaacactcgt aggcgtgctg 1560 actgcagtcc taggaaccat cttcgcctta ctcacccgag cactcattcg tgcaaagagg 1620 ttgcgaagga agcccacctt cccttgggta acactggatt ccggagatga agatgacgac 1680 cattctggag ggggaggagg tggcccgcaa acacctggcg ggcagccccc agcctcaccg 1740 gcgcatagga cgcatcagtc acgcctctcc gtgcaagaca tagcatcgga caccagcctg 1800 ctgagtgtgg accttgacga agacacgctc tcccaatacg acgaaacctt ccaaaggatc 1860 cgtcgtgcgc tctttgaaac cagtttcaca gacattctgc aaaactctgc tcgctggatc 1920 tctgcgttag aagcaatggc attagcagat ggcaacgccc cttacacgct tctcgcgcaa 1980 tacctcaatg gtattgagga ggcgtacacg agcttccgta acacgggaca tgtttcgcgc 2040 gcaacactct caagcttctt cgctttggaa gacagcctac gtgcggctgg catagccttt 2100 ggagccacga caccaacgca aactatacag aaccagtttg ctgactcccc agcccggcgt 2160 tggaaaacac gcttcgaaca aatcgcatgc gaattgggcg acgctagcat taaatcgctt 2220 gccgatcttg cggacatcat cgacaccgag cgcgaaagaa gtgacctgac tcagtttgat 2280 gttcttgcag cctcttccat aagcagcctc tgtcgcgccg ttcgcatcat cagtgacaca 2340 actgatccag atgcgcaact ggccctcgtt gagaacgcga cagccatgca gaacaacatt 2400 aacgccatcc tggggacaaa tgttagcata cctttcctca gtgcaacacg tcgcctactc 2460 gtcacgcgac gcattcagca agccggcgca gaaaatcgtt ctggcgcaac acccgaaaca 2520 atacagcagc tggctgatgc tgaactaatt gtcagcgagg ctaacatgtt caacgagatg 2580 gccactagtc agagagatat cgccaatgct acacaagagg ccaccattcg tgagcatgtg 2640 ctcagtcctg tcaatgccct ggcaaatgtt ggcatggctg ctgctttctt ccggtctggc 2700 ggcatgcgct caagggctct ccaccccgca atgccaacaa tgcctggtgt ttctgctgcc 2760 acgggacggc caatattcca agcctttaga gggcgaggac atcgtctcaa tagatgatga 2820 aactctgtgc tcttgcacag cactgaacaa gcgacacacg cttgttgtga tagttaattt 2880 cacgcacagc gtgccactga acaagcgaca cacgcttgtt gtgataatta attaattttt 2940 gcgcagattc tatctgtgtt ttctagagtg tgctgctctg cagctgcatt ggagggtttc 3000 acgggaacga catcatcaca ccccatccac aaaccgcctg cattcacata ttgtgccact 3060 ttaaatactc atacgtatag gcaagtgcct ttctcgcaga gcatccctga gtgatggcta 3120 ttcacgcgat cgcaatcaac tgacttaatc ctcggttttg caatcaaata gtgagttcca 3180 cctccggatt tgttccccta gaactgcaat cctcgttatg ttgtcgctga ttactatcag 3240 ctcgtaaacc atgatatcca cccacaatta actactcgtg tactaacagt accggatacg 3300 cctatcctgc acttaaacct gcaggacgct atcagatccg cctactgtta ccatttgtgt 3360 agttcgttgt ggttccacct catatctaaa ttcagtacct gcatacaaaa cgtcatgcat 3420 ccctgttcaa catgaacgcg ggtttgggaa gaagcaagtc atcatagact gctggcattg 3480 ttaggttgac aatgtttatg tacacaggaa cgtgac 3516 //