ID D83408; SV 1; linear; genomic RNA; STD; VRL; 7263 BP. XX AC D83408; XX DT 22-MAR-1997 (Rel. 51, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 7) XX DE Barley mild mosaic virus genomic RNA1 for polyprotein precursor, complete DE cds. XX KW polyprotein precursor. XX OS Barley mild mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-7263 RA Kashiwazaki S.; RT ; RL Submitted (06-FEB-1996) to the INSDC. RL Satoshi Kashiwazaki, National Agriculture Research Center, Department of RL Plant Protection; 3-1-1 Kannondai, Tsukuba, Ibaraki 305-8666, Japan RL (E-mail:skashiwa@narc.affrc.go.jp, Tel:81-298-38-8932, Fax:81-298-38-8929) XX RN [2] RP 1-7263 RA Kashiwazaki S.; RT "The complete nucleotide sequence and genome organization of barley mild RT mosaic virus (Na1 strain)"; RL Unpublished. XX RN [3] RP 1-7263 RX DOI; 10.1007/BF01718216. RX PUBMED; 8973524. RA Kashiwazaki S.; RT "The complete nucleotide sequence and genome organization of barley mild RT mosaic virus (Na1 strain)"; RL Arch. Virol. 141(11):2077-2089(1996). XX DR MD5; 3ae4cb1a25a5d522b7278b1f901018bc. XX FH Key Location/Qualifiers FH FT source 1..7263 FT /organism="Barley mild mosaic virus" FT /segment="1" FT /strain="Na1" FT /mol_type="genomic RNA" FT /clone="Na1SK2, Na1SK15, NH38" FT /db_xref="taxon:12466" FT 5'UTR 1..148 FT CDS 149..6925 FT /codon_start=1 FT /product="polyprotein precursor" FT /db_xref="GOA:P90245" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P90245" FT /protein_id="BAA18953.1" FT /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFLV FT LSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWLHM FT MKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIESCERSVNHLTTFQFAREYGLS FT TTYFEKLSNFGGHIRSFVWSSDSGEIFPKPKRSSRTKRISTFTSYYWGEFWCNCIWLLC FT SLWSPARWCFNSVVFIWSLCGVLNLSMVVLQFTLKRHFGRYYFRYVMSGVLAICAVCCV FT HLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADSLSNNLHKISRLVNLFLDDN FT RGFATPALDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDDEDATQDDAIYDSDGLQT FT FKQWVSHNQLAGMQLARPLQYPCSTTYGLTADNVAELATSMAQEAKQWSQVVGHTGSGK FT STRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGRHEGWSNLGD FT KTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQEVTNVRKFYVS FT ATPRDGKKCPEAVRRYEIKTVKSECSSVDTFVRSQDKENSLYVLQHETVLVFLAGKAEC FT DRAASNWNKLYSTNMYAYSLTGDNFTVAYENIVTRMLTDRIIVFCTNILETGVTLNVDC FT VVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGHAICIGNPETRHDLV FT PPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKSQASVMTQFKLSPFLMRDIVRDDG FT AIPLSLHKILKNYTHRNTDLIGTKLSVMSHVYNSWPLYRTVHQSIFRGDSNVPQALKHA FT RVPFNVSTAHDFPWENFAQACLEFQPRVLQVFSDSSSTSRIINLQIGKMHIVNSMEEVK FT ININSYQRSAENLRSVKDSFESSIFRTKLLRGNPTGKITKRIETLLDNVRVLQQVHAKL FT EIIAYSGGEKLNMDKKSVDELNEIVELQSKNSLTAEELARILHLTKPTSTFFNLFAERG FT RQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDEVRHKI FT NKKFKERSTRFSNDSKPETSSKYRNLKQEFVNFYDLKTDANVLQAVFTAMDGAVLLQTE FT APMADIDRVNRLLNDHFEDSESQAAHEGLNTMVKCHLTMKDGRQFELDMEQHDPETIAK FT LGGEVGFRMNRYDLRQVGATRYINPKAQTSAATLEGMTMKPMSAFTIDSAKMVGFIKTA FT KDTLNCILYGDWIIAPAHIQQGEGDITFIFQHTQFTTTTERLASYGIRQFKGLDLVVIR FT RPQQIRAVKKDMRASILDTPTEVQMLYLSTKGGKYQVSTSAVCFPHYNNRWGHVISTAE FT GMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPWVFDWK FT FCGYTTKPRNMQSAPSTLERLNINATGFGFKLNAQGIKPAMLRSTETFSREFPNTQFKL FT IGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKDLKKYD FT RPPHASVFCEDTLTKAKHKMIKILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLYHGKKI FT DIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFTAAPIT FT SLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPGWTHGSGDGSRFD FT SSIDGFLFDVIKDIRKHFMDAEHHKQLDTIYEEIVNTKICLANGLVIQKNCGNNSGQPS FT TVVDNTLALMTSFLYAYARLTGDDTFELMDENFVFVCNGDDNKFAMSPSFMVKFGCDFS FT PFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLH FT AYLSGIAALFESFNTPKLFNLVHTYLLWLVTEHEEELFSMMELKDMFMPLPTKEQIALL FT HYVGTEPIMEETYLQSGKDDPDPIVPPVSDTDLTNMAAAPPDNRRSRAVVPRGTSDWNL FT PEPKMRMLGFKSKINIETLADVPEGYMNTFASVATETQRRKWEEATRGDFGITDNEKWE FT KLLIAACIYFADNGTSPNFDEELTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCY FT SIETKLMFVKLRRVPQWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTS FT NSLLTSEQTNMRTTETRRRNDYDGHEALLR" FT 3'UTR 6923..7263 FT regulatory 7178..7182 FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 7263 BP; 2097 A; 1941 C; 1564 G; 1661 T; 0 other; aaaaataaaa caaaactaca acccaataca aacaacgaac aacaatcaac gaattcaaaa 60 ctcatcaaag caacatcgct catcagtaac aattcaaacg aactcaacaa caaaccaccc 120 ttcgaccaaa cgaactctga ccatcaagat ggaggagttc attcccgaag tgttctacca 180 gaaccaggtt caaagtctca agaaaattct taaatcctgg aaacgtgaca cttccattta 240 cgcgtatctt gctcgcgagc aagaggtcct agccttcctt gtactgagtc ctgcgcacat 300 tgccaaactg aacaaactac tcactgagga gtccgcacga tgcgctctgc ttgcccaaaa 360 ctgtgaaacc atcgaagctt tagccgttgt gcgacaagcc ctgcaaggcg tcacgctgca 420 ctttggtgac aatggtatgg aaaaaggctg gttgcacatg atgaaagcac ttgacgcatg 480 tcttgatgaa agctttagcg agaacgccgc tgcgctcaag aaaagcatcc aggcggtcgg 540 tcacaagctc attgcggcaa aaaatcgcat cgaaagttgc gagcgatctg taaatcacct 600 tacaacgttt caatttgctc gcgaatatgg cttaagtacc acatacttcg aaaaattgtc 660 caatttcggt gggcatattc gaagttttgt gtggtccagc gactcaggag aaattttccc 720 aaaaccaaaa agatcatcac gtacgaagcg catctcgaca ttcacgagct actactgggg 780 tgagttttgg tgcaactgca tctggctcct ctgttccctg tggtctcccg cacgctggtg 840 ttttaattcc gtagttttta tttggagtct ttgtggtgtt cttaatttat ctatggttgt 900 tttgcaattc accctcaagc gtcattttgg tagatactac ttccgctatg tcatgtctgg 960 tgttttagcc atttgtgccg tttgctgtgt gcatcttaaa aatcgaaaag ggcctatact 1020 tcaagcctcc caaaaagaca aacgtttcat aggaatatta gccttctgca tcactgtcat 1080 atacatgttt gatgtggatc tcgccgattc gcttagtaat aaccttcata aaatatcccg 1140 cctcgtgaac ctcttcctgg atgacaaccg cggattcgca acacctgctc ttgacaatct 1200 aacggacttc acaacaattc ttcaaagtgg aacatcgagt gacgacctaa agattgttca 1260 ggacacgcta gctgtggttt tacaagtcga cgatgaggac gcaactcaag atgacgcaat 1320 atacgattcc gacgggcttc agacttttaa gcagtgggtc tctcacaacc aactagccgg 1380 gatgcaactc gcacgcccac tgcaataccc ctgctccacc acctatggcc taactgcaga 1440 caatgttgcg gaactagcca ctagcatggc acaggaagcg aagcagtggt cacaagttgt 1500 tggacacact ggttccggaa agtccacacg actaccaact gcatacgcca actgtctcaa 1560 aggtttggct gggcgaaaga aaaacgtcct cgtttgcgaa cccactagag ctgcaaccgt 1620 taatgtcacc agcggtatct cgcaaaattt cggcaggctc gtctacggac ggcatgaggg 1680 ttggagcaac cttggtgaca aaacaataca ggtcatgaca tacggctccg cactcgcagc 1740 atggaaagtt gacaacaaat tcttaagcca gttcgacgca gtgtttctcg acgaatccca 1800 cctcataacc acgcacgccc ttgttttcga aagcatctgc caggaagtca caaacgtccg 1860 caagttctat gtgtcagcaa caccccgcga tgggaagaaa tgcccagaag ccgtgcgcag 1920 atatgaaatc aaaactgtga aatccgagtg cagtagcgtc gacactttcg ttcgaagcca 1980 agataaggaa aactcgctgt acgtcctcca acacgaaact gtacttgttt ttcttgctgg 2040 gaaagctgag tgcgatagag cagcaagcaa ctggaacaag ctgtactcaa ccaacatgta 2100 cgcatactcc ctaacaggtg acaacttcac agtggcatac gaaaacattg taacacgcat 2160 gctcaccgat cgcatcatcg ttttctgtac aaacattctg gaaactggcg tcaccctcaa 2220 cgtagactgc gttgttgact ttggattcac catgcgcccc gaacttgatc ttgttgacaa 2280 atcgctcacc ttaatgcggc gccgagtcac cgaaaacgag cgcgcacagc gaattgggcg 2340 tgcaggaagg ctcaggaccg gacacgcaat ttgcattgga aatcctgaaa cgcgccacga 2400 cctagtccca ccagaaactc tctacgaggc agctcttctc agcttcgtac atggcgtgca 2460 attctacatc aacgagcatt tcgaaaacgc ctggatcgag ggtgtaacaa agtcccaggc 2520 ctccgtaatg acgcagttca aactttctcc cttcctcatg cgtgacatcg tccgtgatga 2580 tggcgcaata ccactatcgc tccacaagat actcaagaat tacacacacc gcaacaccga 2640 tctgatagga acaaaactct ctgtcatgtc gcatgtctat aactcatggc ctctgtatcg 2700 gacagtgcat caatccatct tccgtggaga ttcaaatgtt ccacaagcgc tcaaacacgc 2760 acgcgtccct tttaacgtca gcaccgccca tgatttccca tgggaaaatt tcgcacaggc 2820 atgcctcgaa ttccagccac gtgttcttca ggtcttcagt gacagcagca gcacttcgcg 2880 cataatcaac ctgcaaatcg gtaagatgca catcgtcaat tccatggaag aagtcaagat 2940 aaacataaac agctatcaac gttctgcaga aaacctacgc tcagtcaagg acagctttga 3000 gagctccatc ttccgaacaa aactgctccg tggaaaccca actgggaaaa taactaagcg 3060 cattgaaact ctccttgaca acgtgcgagt gctgcaacag gtgcacgcga agctagagat 3120 catcgcatac tcaggtggag agaaacttaa catggacaag aaatcagtcg acgaacttaa 3180 tgagatcgtc gaactccaga gcaagaattc actcacagcc gaagagctag cacgcatact 3240 gcacctaaca aaacccacct ccactttctt caatctcttc gctgaacgtg gccgacaaat 3300 gctcgtaacc ctcctggtca tggttgccgc ctcgctcatg tacctcgttt tctgggtttc 3360 cccaaggaaa caggatgaca tcaccatcga gggcaaaggc agggcataca accgtgacaa 3420 gcgcatgggg tatgattcct acgaggagga cgaagttcgc cacaagatca acaagaagtt 3480 caaagaacgc agcacaagat tctccaatga ctccaagccg gaaacaagct caaagtaccg 3540 caacctgaag caagagtttg tgaatttcta tgatctcaaa accgatgcga atgtactaca 3600 agccgtgttc accgcaatgg atggagccgt tcttctgcaa actgaagctc caatggcaga 3660 cattgatcgt gtcaacagac tgctaaatga tcactttgaa gacagcgaaa gccaggctgc 3720 acacgaaggt ctcaacacca tggtcaagtg tcatttaacc atgaaagacg gaagacagtt 3780 tgaactcgac atggaacaac acgatcctga gactatcgcc aaacttggag gcgaagttgg 3840 tttcaggatg aacaggtatg atctacgcca agttggtgcc acacgataca tcaacccaaa 3900 agcacaaaca tccgcagcaa cgcttgaagg catgaccatg aaaccaatga gtgctttcac 3960 cattgacagc gcgaagatgg tcggttttat taaaactgca aaagacacac tcaactgcat 4020 tctatatggc gactggatca tagctcccgc acacatacag cagggcgaag gggacataac 4080 attcatcttc cagcacacac agtttacaac taccaccgag cgtttagcaa gctacgggat 4140 tcgacagttc aaaggccttg accttgttgt cattcgacgc ccccagcaga tacgcgcagt 4200 taagaaggac atgcgcgcca gcattcttga cacacccact gaagtgcaaa tgctctacct 4260 atcaaccaaa ggcggcaagt atcaagtgtc cacgtctgct gtgtgtttcc cacactataa 4320 caaccgatgg ggacacgtca tttcaacagc cgaaggcatg tgcggctgca ttgttttcaa 4380 ccccaccaca aaccacattg ttgggattca cgtctcctac aatgacacgc gcagaagaaa 4440 cgagtttcaa gcttttacaa gtgacgttct aacaacaatc aacgcaccag gacacgaaat 4500 acccttcagt ccatgggttt ttgactggaa gttttgcggg tacacaacga aaccacggaa 4560 catgcaaagt gcaccaagca cgcttgaacg actcaacatc aacgccacag gttttggttt 4620 caaactcaat gcacagggga tcaaacctgc catgcttcgc tccacagaaa cattctccag 4680 ggagttcccg aacacacagt tcaagctcat cggagaagtg aagaagggac tcattgataa 4740 acacacgatc acaggagaga acccctattt ccttgaattc ctcaacacat tcaaaccata 4800 ccaatgggta caagctttca tggacgagta cgcaccctcc atccttgcct acgacgcgta 4860 cttcaaggac ttgaagaagt acgataggcc gccacacgca agtgtgttct gtgaggacac 4920 attgaccaaa gccaaacaca aaatgattaa gattctcgaa gaggcaggta tgggcagaac 4980 cctagtacga accaccgagc aagtcttact tgacatggcc tggaccacct ctggtggacc 5040 cttgtaccat ggcaagaaga ttgacattgt acaacactta tctgatgatg agcttgtgca 5100 attcagtgaa gcctgccaac aggctctcat cactggaacg ctagatggag tctggaacgg 5160 atcactcaaa gccgagctcc gctcttcgca gaagatcctc gagcggaaaa ctcgtgtctt 5220 cactgctgcc cccataacaa gtctaattgc gatgaaatac tacgtggacg atttcaacaa 5280 acaattctac aagactcatc tcaaagcacc acatacagtt ggtatcaaca agtttaaccg 5340 cggatggcag aatctctatg agaagctcaa caaacctgga tggacgcatg ggagtgggga 5400 tggctccagg tttgatagct cgattgatgg attcctcttc gatgtcatca aagacatccg 5460 aaagcacttc atggatgcag aacaccacaa gcagcttgac acaatctatg aagaaattgt 5520 taacacgaag atatgtttag caaatggtct agtcatccaa aagaattgtg gaaacaatag 5580 cggacagccg agcactgtcg tcgacaacac actcgcactc atgacttctt ttctttatgc 5640 atacgcccga ctcactggag atgacacctt tgaactcatg gacgaaaact tcgttttcgt 5700 ctgcaacggc gacgacaaca agttcgccat gtcacccagc ttcatggtga agttcgggtg 5760 cgatttctcc ccattccttt ctgagctagg gctaacctac gagttcgacg aagccaccga 5820 agacatctgt gaaaacccct acatgtcctt gaccatggtt cgcacctcgt tcgggatcgg 5880 cttctctctc tccatcgaac gcatcgttgc aatcctgcaa tggagccgtg ctggtggagt 5940 cctgcatgcc tatctctctg gcattgctgc tcttttcgag tccttcaaca cacccaaact 6000 cttcaacctc gtgcacacat acctcctctg gctagtcacg gagcatgagg aggaactttt 6060 ttcgatgatg gaactcaagg atatgttcat gcctctgccc actaaggaac agatagcctt 6120 gttgcactac gtaggcactg aacccatcat ggaggaaaca tatctgcaat caggaaaaga 6180 tgatccagat cccattgttc ctccagtttc tgacactgat ctcacaaaca tggctgcagc 6240 accacccgac aacagaaggt cgcgcgccgt cgtcccccgt gggaccagtg actggaattt 6300 gcctgaaccc aagatgcgaa tgctaggttt caagtccaaa atcaacatag aaacgctcgc 6360 cgatgtcccc gaagggtata tgaatacctt tgcgtccgtt gcaactgaaa cgcaacgtag 6420 gaaatgggaa gaggccacgc gtggtgattt tggcatcacc gacaacgaga agtgggaaaa 6480 gctgctcatt gctgcctgca tatatttcgc agacaatggc acttcaccaa acttcgatga 6540 ggagctcact atggaagtca atggcggtct caactccatc aaagagtatc ccgtccgccc 6600 ttttgttgtc agggccaaaa agatctccac actgcgcagg atctttcgct gttactccat 6660 tgagacgaaa ctaatgttcg tgaagctgag gcgcgtacca caatgggcta taaagcacgg 6720 gtgccttgat gaaatcgtct tcgatttcat gatcccagac cagttcactt ccagaactgc 6780 actcgaaaca ctgaagcaga ccaagcttgc tgccattggt gttggcacaa gcaattctct 6840 cctcacctcc gaacagacga acatgagaac cactgaaacc cgaaggcgca acgactacga 6900 cggtcacgag gcgcttctcc ggtaggtatc tcacacagtt ccatttcctt ttcagcaatg 6960 catttaaaca cgcttccaat tacatcaagc gtcaagagtt gttcccgctt gcagttaatc 7020 cttatggggt ggcactttgt gttatgcaat ggacagttca atgacgcaat caaccatcat 7080 tggttggtga caacgcagca tgttctttct tttcacatca agcgacctgc acatcgcccg 7140 cttacagcta atcctacctg aggatggcac tctgtgttat gtaatggaat gtgcaatctc 7200 gcaaccaacc gtcattggtt gatggtgcgg ccaaaacccg cactcctgta taccggaaag 7260 gtt 7263 //