Dbfetch
ID D83003; SV 1; linear; genomic DNA; STD; PLN; 5300 BP. XX AC D83003; XX DT 29-JAN-1996 (Rel. 46, Created) DT 23-DEC-2010 (Rel. 107, Last updated, Version 9) XX DE Nicotiana tabacum retrotransposon Tto1 DNA. XX KW . XX OS Nicotiana tabacum (common tobacco) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; OC Nicotiana. XX RN [1] RP 1-5300 RA Hirochika H.; RT ; RL Submitted (10-JAN-1996) to the INSDC. RL Contact:Hirohiko Hirochika National Institute of Agrobiological Resources, RL Molecular Biology; 2-1-2 Kannondai, Tsukuba, Ibaraki 305, Japan XX RN [2] RA Hirochika H., Otsuki H., Yoshikawa M., Otsuki Y., Takeda S.; RT "Autonomous Transposition of the Tobacco Retrotransposon Tto1 in Rice"; RL Unpublished. XX RN [3] RX DOI; 10.1105/tpc.8.4.725. RX PUBMED; 8624443. RA Hirochika H., Otsuki H., Yoshikawa M., Otsuki Y., Sugimoto K., Takeda S.; RT "Autonomous transposition of the tobacco retrotransposon Tto1 in rice"; RL Plant Cell 8(4):725-734(1996). XX DR MD5; a551af06b3db8317a39974dee6660e4d. DR EuropePMC; PMC1370802; 16043504. DR EuropePMC; PMC2576258; 18842156. DR EuropePMC; PMC2802912; 17337479. DR EuropePMC; PMC3550579; 23573017. DR EuropePMC; PMC5258746; 28174588. XX FH Key Location/Qualifiers FH FT source 1..5300 FT /organism="Nicotiana tabacum" FT /strain="BY-2" FT /mol_type="genomic DNA" FT /clone="Tto1-1" FT /db_xref="taxon:4097" FT mobile_element 1..5300 FT /mobile_element_type="retrotransposon: Tto1" FT repeat_region 1..574 FT /rpt_type=LONG_TERMINAL_REPEAT FT regulatory 168..173 FT /regulatory_class="TATA_box" FT CDS 716..4732 FT /codon_start=1 FT /note="ORF(AA 1-1338)" FT /db_xref="GOA:Q9ZRJ0" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR025724" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/TrEMBL:Q9ZRJ0" FT /protein_id="BAA11674.1" FT /translation="MEARTSKMVNLNGTNYHLWRNKMKDLLFVTKMHLPVFSSQKPEDK FT SDEDWEFEHNQVCGYIRQFVEDNVYNHISGVTHARSLWDKLEELYASKTGNNKLFYLTK FT LMQVKYVEGTTVADHLNEIQGIVDQLSGMGIKFDDEVLALMVLATLPESWETLKVSITN FT SAPNGVVNMETVKSGILNEEMRRRSQGTSSSQSEVLAVTTRGRSQNKSQSNRDKSRGKS FT NKFANVECHYCKKKGHIKRFCRQFQNDQKKNKGKKVKPEESSDDETNSFGEFNVVYDDD FT IINLTTQEMTWVIDSGATIHATPRRELFSSYTLGDFGRVKMGNANFSTVVGKGDVCLET FT MNGMKLLLRDVRHVPDMRLNLISVDKLDEEGYCNTFHNGQWKLTKGSLMVARGTKQSKL FT YVTQASISQQVINVAENDSNIKLWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADC FT LAGKQNRVSFKRFPPSRRQNVLDLVHSDVCGPFKKSLGGARYFVTFIDDHSRKTWVYTL FT KTKDQVFQVFKQFLTLVERETGKKLKCIRTDNGGEYQGQFDAYCKEHGIRHQFTPPKTP FT QLNGLAERMNRTLIERTRCLLSHSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIW FT LGRDISYDQLRVFGCKAYVHVPKDERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLV FT RSRDVVFVEDQTIEDIDKVEKSTDDSAEFELPPTVVPRQVGDDVQDNQPEAPGLPNEDE FT LADTEGNEDNGDDDADEEDQPQPPILNNPPYHTRSGRVVQQSTRYSPHEYVLLTDGGEP FT DSFEEAIDDEHKEKWIEAMQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNS FT LPRFKARLVVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLH FT GDLEEEIYMEQPDGFQQKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTS FT DHCVFAQKFSDDDFIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGM FT RIMRDREAKKLWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKM FT ERIPYASAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLC FT LCFGEDNPVLVGYTDADMAGDVDSRKSTSGYLINFSGGAVSWQSKLQKCVALSTTEAEF FT IAATEACKELIWMKKFLTELGFSQDGYQLFCDSQSAIHLAKNASFHSRSKHIDVRYNWI FT RDVLEKKMLRLEKIHTDENGSDMLTKTLPKGKFEFCREAAGIVDPPYSWKGENC" FT repeat_region 4727..5300 FT /rpt_type=LONG_TERMINAL_REPEAT XX SQ Sequence 5300 BP; 1623 A; 944 C; 1315 G; 1418 T; 0 other; tgttagtttt tccaacaatt atggtgatgt atgggagagg taagcaatga tgcaactctc 60 cttagtgaga taagcaatga tgcaatgagt ggtaggtgag atgagaatat tgcaaattga 120 tccttcttgg taggtgagat ttgcactttt ggtccctatc tcaaaactat aaataccccc 180 ttccatttca ttgtataaca caccaaaaaa tatatcaaaa ctcaagaaga aagagtttga 240 gagggagaga gatatagttc ctttaggaat gtttcctaac aggggagtga caaaatagtg 300 agtagaaata ctagtcgggt atttttcggg aaacactttt gtgtgcgcca ctattttggg 360 tagagctcag gaattgttgt acctccaaat tattgaggaa gtctctcttt gtatgcctgc 420 taaatgtttt agtggaagtt ggtgtcggat ttgtggacgt agcctaaacg ttttaggtga 480 accacgttaa atattgtgtc atttattttt ggtttcgttg atcatttatt ttattccgct 540 gtgcagtagt gtttagtgcc accggatcct aacaagtggt atcagagctt tggttagagt 600 actattcata cgtacgagta ctattcatcc atacgggcac tattcatatc cacggttact 660 attcaccgtc ggattttttt tttagattgc aaaagtctgt caaattctga tctaaatgga 720 ggcgaggaca agcaagatgg tcaacctgaa tggcacaaat tatcacttat ggagaaacaa 780 gatgaaggat ctcctgttcg tgacaaagat gcacctgccg gtgttcagtt ctcagaaacc 840 tgaagataag tcagacgagg actgggaatt tgagcacaac caagtgtgcg gctacatacg 900 gcaatttgtt gaagacaatg tgtacaacca catttctggt gtgacacatg caaggtcgtt 960 atgggacaag ctcgaagagt tgtatgcctc taaaacaggt aacaacaaat tattttactt 1020 gacaaaatta atgcaagtaa aatatgtaga agggacaact gtggcagatc accttaatga 1080 aatacaaggg attgtcgacc agttgtcggg aatgggcata aagttcgatg acgaggtact 1140 tgctcttatg gtgctggcaa cactcccaga gtcatgggaa accttgaagg tttcaatcac 1200 caattctgca cccaacggtg tggtaaacat ggagacagtc aagagtggca ttctgaatga 1260 agaaatgaga cgccgatcac aaggaacatc ttcttcacag tcagaggtgt tggctgttac 1320 gaccaggggg agaagtcaaa ataagagcca gagtaacaga gataagagca gaggtaaatc 1380 caacaaattt gcaaatgttg agtgccatta ctgcaaaaag aaggggcata tcaaaagatt 1440 ttgccgacag ttccagaatg accagaagaa gaacaaaggc aaaaaggtga agcccgaaga 1500 aagcagtgat gatgaaacga actcctttgg tgagttcaac gttgtctacg atgacgacat 1560 tatcaatctg acaacccaag agatgacctg ggtgattgat agtggggcta ccattcatgc 1620 gacgccacgg agagaactct tctcatctta cacacttgga gactttggtc gtgtaaagat 1680 gggaaatgcc aatttctcaa cagttgtagg caaaggtgat gtttgcctag agaccatgaa 1740 tgggatgaag ctacttttaa gagatgtcag gcatgttcca gatatgcgcc tgaatctgat 1800 ctccgtagac aagctcgatg aggaaggtta ctgcaatacc ttccataatg gccaatggaa 1860 gctcacgaag ggctcattga tggtggcgcg gggcacgaag cagtcaaagt tgtacgtgac 1920 ccaggcgagc atctcccaac aagttataaa tgttgcggag aatgatagca atatcaagtt 1980 gtggcataga cgtcttggcc acatgagtga gaagtcaatg gcgcgtttgg taaagaagaa 2040 cgccttacca ggtctaaacc agatccagtt gaagaagtgt gctgactgtt tagctgggaa 2100 acaaaacaga gtttcgttca aaagattccc tccttccaga aggcaaaatg tgttggatct 2160 ggtacactca gatgtatgtg ggcctttcaa gaagtccctc ggtggtgccc gatatttcgt 2220 gacctttatt gatgatcatt cacgaaagac atgggtatac acgctgaaga ccaaggatca 2280 agtgtttcaa gttttcaaac agtttctgac cttggtggaa agagagactg gtaagaagtt 2340 gaagtgcatc cggacagaca atggcggtga ataccagggt caatttgatg cttactgtaa 2400 agagcatggt attcgacatc agttcacacc tcctaaaact ccccagttga atggcttggc 2460 tgagaggatg aacagaactt tgatcgagag aaccagatgt ttactctctc attcaaagtt 2520 accaaaggct ttctggggtg aagctctagt tacagcagcc tatgtgctga accattcacc 2580 ctgtgtccct cttcagtaca aggctccaga aaagatttgg ttaggaagag atatctctta 2640 tgatcaatta cgggtatttg gctgcaaagc ctatgtccat gttccgaaag atgaaaggag 2700 caaacttgat gtcaagacaa gggagtgtgt attcatcggc tatggtcaag acatgcttgg 2760 ctataagttc tatgatccgg tggaaaagaa gctcgtcagg agtcgagatg tcgtgttcgt 2820 tgaggaccaa acaattgaag acattgacaa agtagagaag tccactgatg attctgctga 2880 gtttgagttg cctccaacag tggtgccgag acaagttgga gatgatgttc aggataatca 2940 acctgaagcc cctggtcttc ctaatgaaga tgaactagca gatactgaag gtaacgagga 3000 caatggtgat gatgatgcag acgaggagga tcaacctcaa ccaccaatcc tcaataaccc 3060 tccttatcac acaagatctg gaagagttgt gcaacagtct accagatatt ctccacatga 3120 gtatgtgtta ctcactgacg ggggagaacc cgacagcttt gaagaagcta ttgatgatga 3180 acataaggag aagtggatag aagccatgca agacgagata aaatccttgc atgagaacaa 3240 gacgtttgag ctggtgaagt tgccgaaagg caagagagct ttgaagaata agtgggtgtt 3300 caagatgaag catgatgaac acaattccct tccgagattc aaagcaagat tggtcgtcaa 3360 aggtttcaat caaaggaaag gcattgactt tgatgaaata ttctcaccag ttgtgaaaat 3420 gacctcaata cgcacggtgc tgggattagc agcaagcctc aacctggagg ttgaacagat 3480 ggatgtaaaa actgccttcc tacatggtga tttggaagag gagatataca tggagcaacc 3540 agacggtttc cagcaaaagg ggaaagagga ctacgtttgt agattgagga aaagcctcta 3600 tggcttaaaa caggcaccaa ggcagtggta caagaagttc gagtcggtga tggggcaaca 3660 cggctacaag aagacaactt cagaccattg tgtgttcgct cagaagtttt ctgacgatga 3720 tttcatcatc ctattgctct atgtagatga tatgttgatt gttggccgga atgtttccag 3780 aattaatagc ttaaaagaac agctaagcaa gttcttcgcc atgaaagact tggggccagc 3840 aaaacagatc cttgggatga ggattatgcg agaccgagaa gccaagaagt tatggttgtc 3900 tcaggagaag tacatcgaga aggtacttca acggttcaac atggagaaaa ctaaagcagt 3960 tagctgtcct cttgctaacc actttagatt gagcaccaag caaagcccgt caacagatga 4020 tgagagaaga aagatggagc ggattccata tgcttcagca gtaggaagtt tgatgtatgc 4080 catggtttgt acacggccag atatcgctca cgctgtagga gtggtaagta gatttctttc 4140 taatccaggt aaggaacatt gggatgctgt taagtggatt ctcaggtatc ttcgaggaac 4200 ctccaaacta tgcttatgtt ttggagaaga caaccctgtg ttggttggct atactgatgc 4260 agatatggcc ggagatgttg attctagaaa atcaacttca ggatacttga ttaacttttc 4320 agggggagct gtgtcatggc aatcaaagtt gcaaaaatgt gttgcattat caactactga 4380 agctgaattc atcgcagcaa cggaggcttg caaagaattg atatggatga agaagttctt 4440 aactgaactt ggattttcgc aagacggtta tcagttattt tgtgatagtc aaagtgctat 4500 ccaccttgcg aagaatgcct cattccattc cagatccaaa catattgatg tgagatataa 4560 ttggatcagg gatgtgttgg agaagaagat gttgcggctt gaaaagatcc atacagacga 4620 aaatggatcg gacatgttga ccaagacttt accgaaaggg aagtttgagt tctgtagaga 4680 agctgcaggg atagtggatc caccatatag ttggaagggg gagaattgtt agtttttcca 4740 acaattatgg tgatgtatgg gagaggtaag caatgatgca actctcctta gtgagataag 4800 caatgatgca atgagtggta ggtgagatga gaatattgca aattgatcct tcttggtagg 4860 tgagatttgc acttttggtc cctatctcaa aactataaat acccccttcc atttcattgt 4920 ataacacacc aaaaaatata tcaaaactca agaagaaaga gtttgagagg gagagagata 4980 tagttccttt aggaatgttt cctaacaggg gagtgacaaa atagtgagta gaaatactag 5040 tcgggtattt ttcgggaaac acttttgtgt gcgccactat tttgggtaga gctcaggaat 5100 tgttgtacct ccaaattatt gaggaagtct ctctttgtat gcctgctaaa tgttttagtg 5160 gaagttggtg tcggatttgt ggacgtagcc taaacgtttt aggtgaacca cgttaaatat 5220 tgtgtcattt atttttggtt tcgttgatca tttattttat tccgctgtgc agtagtgttt 5280 agtgccaccg gatcctaaca 5300 //