ID D78608; SV 1; linear; genomic RNA; STD; VRL; 4851 BP. XX AC D78608; XX DT 16-DEC-1995 (Rel. 46, Created) DT 15-JUN-2010 (Rel. 105, Last updated, Version 8) XX DE Tobacco mosaic virus gene for 180K protein, complete cds. XX KW . XX OS Tobacco mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-4851 RA Watanabe T.; RT ; RL Submitted (04-DEC-1995) to the INSDC. RL Contact:Takato Watanabe National Institute of Genetics, Department of RL Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan XX RN [2] RX PUBMED; 7096297. RA Meshi T., Ohno T., Okada Y.; RT "Nucleotide sequence and its character of cistron coding for the 30 K RT protein of tobacco mosaic virus (OM strain)"; RL J. Biochem. 91(4):1441-1444(1982). XX RN [3] RX DOI; 10.1016/0014-5793(83)80772-8. RX PUBMED; 6628671. RA Meshi T., Ishikawa M., Takamatsu N., Ohno T., Okada Y.; RT "The 5'-terminal sequence of TMV RNA. Question on the polymorphism found in RT vulgare strain"; RL FEBS Lett. 162(2):282-285(1983). XX RN [4] RA Watanabe T., Hibi T., Ishihama A.; RT "Nucleotide sequence of the coding region for 180K protein of tobacco RT mosaic virus common strain OM"; RL Unpublished. XX DR MD5; d026696e2302f9ee3ef4dcbb2343ca78. DR EuropePMC; PMC104018; 10074108. DR EuropePMC; PMC113985; 11134302. XX FH Key Location/Qualifiers FH FT source 1..4851 FT /organism="Tobacco mosaic virus" FT /strain="OM" FT /mol_type="genomic RNA" FT /db_xref="taxon:12242" FT CDS 1..4851 FT /codon_start=1 FT /transl_except=(pos:3349..3351,aa:OTHER) FT /product="180K protein" FT /note="readthrough" FT /db_xref="GOA:O93058" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:O93058" FT /protein_id="BAA11429.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPNFQ FT KEAFDRYAEIPEDAVCHNTFQTCEHQPMQQSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLIRVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKKMEETEVMYNALSELSVLRESDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFERPTEANVALALQDQEKASEGALVVT FT SREVEEPSMKGSMARGELQLAGLAGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGVVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLRNGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYV FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTS FT SVKKSVSQEMVGGAAVINPISKPLHGKILTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGTQXQLQIDSVFKGSNLFVAAPKTGDISDMQFYYDKCLPGNSTMMNNFDAVTM FT RLTDISLNVKDCILDMSKSVAAPKDQIKPLTPMVRTAAEMPRQTGLLENLVAMIKRNFN FT APELSGIIDIENTASLVVDKFFDSYLLKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQ FT LADFDFVDLPAVDQYRHMIKAQPKQKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSEL FT TRQLLDSVDSSRFLFFTRKTPAQIEDFFGDLDSHVPMDVLELDISKYDKSQNEFHCAVE FT YEIWRRLGFEDFLGEVWKQGHRKTTLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAAC FT LASMLPMEKIIKGAFCGDDSLLYFPKGCEFPDVQHSANLMWNFEAKLFKKQYGYFCGRY FT VIHHDRGCIVYYDPLKLISKLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAV FT REVHKTAPPGSFVYKSLVKFLSDKVLFRSLFIDGSSC" FT CDS 1..3351 FT /codon_start=1 FT /product="130K protein" FT /db_xref="GOA:O93058" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:O93058" FT /protein_id="BAA11430.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPNFQ FT KEAFDRYAEIPEDAVCHNTFQTCEHQPMQQSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLIRVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKKMEETEVMYNALSELSVLRESDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFERPTEANVALALQDQEKASEGALVVT FT SREVEEPSMKGSMARGELQLAGLAGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGVVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLRNGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYV FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTS FT SVKKSVSQEMVGGAAVINPISKPLHGKILTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGTQ" FT misc_difference 57 FT /replace="c" FT /note="conflict" FT /citation=[3] FT misc_difference 195 FT /replace="g" FT /note="conflict" FT /citation=[3] FT misc_difference 4738 FT /replace="a" FT /note="conflict" FT /citation=[2] FT misc_difference 4796 FT /replace="t" FT /note="conflict" FT /citation=[2] FT misc_difference 4830 FT /replace="c" FT /note="conflict" FT /citation=[2] XX SQ Sequence 4851 BP; 1385 A; 939 C; 1171 G; 1356 T; 0 other; atggcataca cacagacagc taccacatca gctttgctgg acactgtccg aggaaacaac 60 tccttggtca atgatctagc aaagcgtcgt ctttacgaca cagcggttga agagtttaac 120 gctcgtgacc gcaggcccaa agtgaacttt tcaaaagtaa taagcgagga gcagacgctt 180 attgctaccc gggcgtatcc agaattccaa attacatttt ataacacgca aaatgccgtg 240 cattcgcttg caggtggatt gcgatcttta gaactggaat atctgatgat gcaaattccc 300 tacggatcat tgacttatga cataggcggg aattttgcat cgcatctgtt caagggacga 360 gcatatgtac actgctgcat gcccaacctg gacgttcgag acatcatgcg gcatgaaggc 420 cagaaagaca gtattgaact atacctttct aggctagaga gagggggaaa aacagtcccc 480 aacttccaaa aggaagcatt tgacagatac gcagaaattc ctgaagacgc tgtctgtcac 540 aatactttcc agacatgcga acatcagccg atgcagcaat caggcagagt gtacgccatt 600 gcgctacaca gcatatatga catacccgct gatgagttcg gggcagcact tttgaggaaa 660 aatgtccata cgtgctatgc cgctttccac ttctctgaga acctgcttct tgaagattca 720 tatgtcaatt tggacgaaat caacgcgtgt ttttcgcgcg atggagacaa gttgaccttt 780 tcttttgcat cagagagtac tcttaattac tgtcatagtt attctaatat tcttaagtat 840 gtgtgcaaaa cttacttccc ggcctctaat agagaggttt acatgaagga gtttttagtc 900 accagggtta atacctggtt ttgtaagttt tctagaatag atacttttct tttgtacaaa 960 ggtgtggccc ataaaagtgt agatagtgag cagttttata ctgcaatgga agacgcatgg 1020 cattacaaaa agactcttgc aatgtgcaac agcgagagaa tcctccttga ggattcatca 1080 tcagtcaatt actggtttcc caaaatgagg gatatggtca tcgtaccatt attcgatatt 1140 tctttggaga ctagtaagag gacgcgtaag gaagtcttag tgtccaagga tttcgtgttt 1200 acagtgctta accacattcg aacataccag gcgaaagctc ttacatacgc aaatgttttg 1260 tccttcgtcg aatcgattcg atcgagggta atcattaacg gtgtgacagc gaggtctgaa 1320 tgggatgtgg acaaatcttt gttacaatcc ttgtccatga cgttttacct gcatactaag 1380 cttgccgttc taaaggatga cttactgatt agcaagttta gtctcggttc gaaaacggtg 1440 tgccagcatg tgtgggatga gatttcgctg gcgtttggga acgcatttcc ctccgtgaaa 1500 gagaggctct tgaacaggaa acttatcaga gtggcaggcg acgcactaga gatcagggtg 1560 cctgatctat atgtgacctt ccacgaccga ttagtgactg agtacaaggc ctctgtggac 1620 atgcctgcgc ttgacattag gaagaagatg gaagaaacgg aagtgatgta caatgcactt 1680 tcagaattat cggtgttaag ggagtctgac aaattcgatg ttgatgtttt ttcccagatg 1740 tgccaatctt tggaagttga cccaatgacg gcagcgaagg ttatagtcgc ggtcatgagc 1800 aatgagagcg gtctgactct cacatttgaa cgacctactg aggcgaatgt tgcgctagct 1860 ttacaggatc aagagaaggc ttcagaaggt gctttggtag ttacctcaag agaagttgaa 1920 gaaccgtcca tgaagggttc gatggccaga ggagagttac aattagctgg tcttgctgga 1980 gatcatccgg agtcgtccta ttctaggaac gaggagatag agtctttaga gcagtttcat 2040 atggcaacgg cagattcgtt aattcgtaag cagatgagct cgattgtgta cacgggtccg 2100 attaaagttc agcaaatgaa aaactttatc gatagcctgg tagcatcact atctgctgcg 2160 gtgtcgaatc tcgtcaagat cctcaaagat acagctgcta ttgaccttga aacccgtcaa 2220 aagtttggag tcttggatgt tgcatctagg aagtggttaa tcaaaccaac ggccaagagt 2280 catgcatggg gtgttgttga aacccacgcg aggaagtatc atgtggcgct tctggaatat 2340 gatgagcagg gtgtggtgac atgcgatgat tggagaagag tagctgtcag ctctgagtct 2400 gttgtttatt ccgacatggc gaaactcaga actctgcgca gactgcttcg aaacggagaa 2460 ccgcatgtca gtagcgcaaa ggttgttctt gtggacggag ttccgggctg tggaaaaacc 2520 aaagaaattc tttccagagt taattttgat gaagatttaa ttttagtacc tgggaagcaa 2580 gccgctgaaa tgatcagaag acgtgcgaat tcctcaggga ttattgtggc cacgaaggac 2640 aacgttaaaa ccgttgattc tttcatgatg aattttggga aaagcacacg ctgtcagttc 2700 aagaggttat tcattgatga agggttgatg ttgcatactg gttgtgttaa ttttcttgtg 2760 gcgatgtcat tgtgcgaaat tgcatatgtt tacggagaca cacagcaaat tccatacatc 2820 aatagagttt caggattccc gtaccccgcc cattttgcca aattggaagt tgacgaggtg 2880 gagacacgca gaactactct ccgttgtcca gccgatgtca cacattatct gaacaggaga 2940 tatgagggct ttgtcatgag cacttcttcg gttaaaaagt ctgtttcgca ggagatggtc 3000 ggcggagccg ccgtgatcaa tccgatctca aaacccttgc atggcaagat cctgactttt 3060 acccaatcgg ataaagaagc tctgctttca agagggtatt cagatgttca cactgtgcat 3120 gaagtgcaag gcgagacata ctctgatgtt tcactagtta ggttaacccc tacaccggtc 3180 tccatcattg caggagacag cccacatgtt ttggtcgcat tgtcaaggca cacctgttcg 3240 ctcaagtact atactgttgt tatggatcct ttagttagta tcattagaga tctagagaaa 3300 cttagctcgt acttgttaga tatgtataag gtcgatgcag gaacacaata gcaattacag 3360 attgactcgg tgttcaaagg ttccaatctt tttgtggcag cgccaaagac tggtgatatt 3420 tctgatatgc agttttacta tgataagtgt ctcccaggca acagcaccat gatgaataat 3480 tttgatgctg ttaccatgag gttgactgac atttcattga atgtcaaaga ttgcatattg 3540 gatatgtcta agtctgttgc tgcgcctaag gatcaaatca aaccactaac acctatggta 3600 cgaacggcgg cagaaatgcc acgccagact ggactattgg aaaatttagt ggcgatgatt 3660 aaaaggaact ttaacgcacc cgagttgtct ggcatcattg atattgaaaa tactgcatct 3720 ttagttgtag ataagttttt cgatagttat ttgcttaaag aaaaaagaaa accaaataaa 3780 aatgtttctt tgttcagtag agagtctctc aatagatggt tagaaaagca ggaacaggta 3840 acaataggtc agcttgcaga ttttgatttt gtggatttgc cagcagttga tcagtacaga 3900 cacatgatca aagcacaacc caagcaaaaa ttggacactt caatccaaac ggagtacccg 3960 gctttgcaga cgattgtgta ccattcaaaa aagatcaatg caatattcgg cccgttgttt 4020 agtgagctta ctaggcaatt actggacagt gttgattcga gcagattttt gttttttaca 4080 agaaagacac cagcgcagat tgaggatttc ttcggagatc ttgacagtca tgtgccgatg 4140 gatgtcttgg agctggatat atcaaaatac gacaaatctc agaatgaatt ccactgtgca 4200 gtagaatacg agatctggcg aagattgggt tttgaagact tcttgggaga agtttggaaa 4260 caagggcata gaaagaccac cctcaaggat tataccgcag gtatcaaaac ttgcatctgg 4320 tatcaaagaa agagtgggga cgtcacgacg ttcattggaa acactgtgat cattgctgca 4380 tgtttggcct cgatgcttcc gatggagaaa ataatcaaag gagccttttg tggtgacgat 4440 agtctgctgt acttcccaaa gggttgtgag tttccggatg tgcaacactc cgcgaatctt 4500 atgtggaatt ttgaagcaaa actgtttaaa aaacagtatg gatatttttg cggaagatat 4560 gtaatacatc acgacagagg atgcattgtg tattacgatc ccctaaagtt gatctcgaaa 4620 cttggtgcta aacacatcaa ggattgggaa cacttggagg agttcagaag gtctctttgt 4680 gatgttgctg tttcgttgaa caattgtgcg tattacacac agttggacga cgctgtaagg 4740 gaggttcata agaccgcccc tccaggttcg tttgtttata aaagtctggt gaagtttttg 4800 tctgataaag ttctttttag aagtttgttc atagatggct ctagttgtta a 4851 //