ID D63809; SV 1; linear; genomic RNA; STD; VRL; 6395 BP. XX AC D63809; XX DT 15-OCT-1996 (Rel. 49, Created) DT 27-DEC-2006 (Rel. 90, Last updated, Version 5) XX DE Tobacco mosaic virus genomic RNA for 130K protein, 180K protein, 30K DE protein and coat protein, complete sequence. XX KW 130K protein; 180K protein; 30K protein; coat protein. XX OS Tobacco mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6395 RA Sako N.; RT ; RL Submitted (07-AUG-1995) to the INSDC. RL Nobumichi Sako, Faculty of Agriculture, Saga University, Laboratory of RL Plant Virology; 1 Honjo-machi, Saga, Saga 840, Japan RL (Tel:0952-24-5191(ex.2730), Fax:0952-22-6274) XX RN [2] RP 1-6395 RX DOI; 10.1007/BF01718163. RX PUBMED; 8678834. RA Chen J., Watanabe Y., Sako N., Ohsima K., Okada Y.; RT "Complete nucleotide sequence and synthesis of infectious in vitro RT transcripts from a full-length cDNA clone of a rakkyo strain of tobacco RT mosaic virus"; RL Arch. Virol. 141(5):885-900(1996). XX DR MD5; 803b3ec7c6232c70ea35e94a1896af06. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01077; TLS-PK2. DR RFAM; RF01114; TMV_UPD-PK1. DR RFAM; RF01115; TMV_UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6395 FT /organism="Tobacco mosaic virus" FT /strain="Rakkyo" FT /mol_type="genomic RNA" FT /db_xref="taxon:12242" FT CDS 69..4919 FT /codon_start=1 FT /transl_except=(pos:3417..3419,aa:OTHER) FT /product="180K protein" FT /note="position 3417..3419 is readthrough codon" FT /db_xref="GOA:Q98745" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q98745" FT /protein_id="BAA09876.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVDEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLDRGGKTVPNFQ FT KEAFDRYAEFPEDAVCHNTFQTCEHQPMQQSGKVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSFSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIIPLFDISLETSKRSRKEVLVSKDFV FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNKKLIRAAGDALE FT IKVPDLYITFHDRLVAEYKSSVDMPALDIRKRMEETEVMYNALSELSVLRESDKFDVDV FT FSQMCKSLEVDPMTAAKVIVAVMSNESGLTLTFERPTEANVAQALQDQEKASEGALVVT FT SREVEEPSMKGSMARGELQLAGFAGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGIVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLRDGEPHVSNAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVRTVDSFMMNFGKTTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCDVAYV FT YGDTQQIPYINRVSGFPYPAHFSKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVVSTS FT SVKKSVSQEMVSGAAVINPISKPLHGKILTFTQSDKEALLSRGYSEVHTVHEVQGETYS FT DVSLVRLTPTPISIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGIQXQLQIDSVFKGSNLFVAAPKTGDISDMQFYYDKCLPGNSTMMNNFDAVTM FT RLTDISLNVKDCILDMSKSVAAPKDQIKPLIPMVRTAAEMPRQTGLLENLVAMIKRNFN FT APELSGIIDIENTASLVVDKFFDSYLLKEKRKPNKNVSLFSRESLNRWLEKQERVTIGQ FT LADFDFVDLPAVDQYRHMIKAQPKQKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSEL FT TRQLLDSVDSSRFLFFTRKTPAQIEDFFGDLDSHVPMDVLELDISKYDKSQNEFHCAVE FT YEIWRRLGFEDFLGEVWKQGHRKTTLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAAC FT LASMLRMEKIIKGAFCGDDSLLYFPKGCEFPDIQHSVNLMWNFEAKLFKKQYGYFCGRY FT IIHHDRGCIVYYDPLKLISKLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAV FT WEVHKTAPPGSFVYKSLVKYLSDKVLFRSLFINGSSC" FT CDS 69..3419 FT /codon_start=1 FT /product="130K protein" FT /db_xref="GOA:Q98745" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q98745" FT /protein_id="BAA09877.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVDEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLDRGGKTVPNFQ FT KEAFDRYAEFPEDAVCHNTFQTCEHQPMQQSGKVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSFSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIIPLFDISLETSKRSRKEVLVSKDFV FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNKKLIRAAGDALE FT IKVPDLYITFHDRLVAEYKSSVDMPALDIRKRMEETEVMYNALSELSVLRESDKFDVDV FT FSQMCKSLEVDPMTAAKVIVAVMSNESGLTLTFERPTEANVAQALQDQEKASEGALVVT FT SREVEEPSMKGSMARGELQLAGFAGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGIVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLRDGEPHVSNAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVRTVDSFMMNFGKTTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCDVAYV FT YGDTQQIPYINRVSGFPYPAHFSKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVVSTS FT SVKKSVSQEMVSGAAVINPISKPLHGKILTFTQSDKEALLSRGYSEVHTVHEVQGETYS FT DVSLVRLTPTPISIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGIQ" FT CDS 4903..5709 FT /codon_start=1 FT /product="30K protein" FT /db_xref="GOA:Q98746" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:Q98746" FT /protein_id="BAA09878.1" FT /translation="MALVVKGKVNINEFIDLTKMEKILPSMFTPVKSVMCSKVDKIMVH FT ENESLSEVNLLKGVKLIDSGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYAITTQDAMKNVWQVLVNIRNVKMSAGFCPLSLEFVSVC FT IVYRNNIKIGLREKITNVRDGGPMELTEEVVDEFMEDVPMSIRLAKFRSRTGKKSVVPK FT GNFSSRDRSQPNKNYGNAKDFGGMSFKKNNLIDDGSETSVAESDSF" FT CDS 5712..6191 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q98747" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/Swiss-Prot:Q98747" FT /protein_id="BAA09879.1" FT /translation="MSYNINTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPDSDFKVYRFNAVLDPLVTALLGAFDTRNRIIEVENQANPS FT TAETLDATRRVDDATVAIRSAINNLIVELTRGTGSYNRSSFESSSGLVWTSSPAT" XX SQ Sequence 6395 BP; 1876 A; 1222 C; 1513 G; 1784 T; 0 other; gtatttttac aacaattacc aacaacaaca aacaacaaac aacattacaa ttactatcta 60 caactacaat ggcatacaca cagacagcta ccacatcagc tttgctggac actgtccgag 120 gaaacaattc tttggtcaat gatctagcaa agcgtcgtct ttacgataca gcggttgacg 180 agttcaacgc tcgtgatcgc aggcccaaag tgaacttctc aaaagtgata agcgaggagc 240 agacgcttat tgctacccgg gcgtatccag aattccaaat tacattttat aacacgcaaa 300 atgccgtaca ctcactcgca ggtggattgc gatctttaga actggaatat ctgatgatgc 360 aaattcccta cggatcactg acttatgaca taggcgggaa tttcgcatct catctgttca 420 aaggacgagc atacgttcac tgctgcatgc ccaacctgga cgtccgtgac attatgcggc 480 acgaaggcca gaaagacagt attgaactgt acctttccag actagataga gggggaaaaa 540 cagtccccaa tttccaaaag gaagcttttg acagatatgc agaatttcca gaagacgctg 600 tctgtcacaa tacttttcag acatgcgaac atcagccgat gcagcaatca ggcaaagtgt 660 atgctatagc gctacacagc atatatgata tacccgctga tgagttcggg gcggcactcc 720 tgaggaaaaa tgtccatacg tgttatgccg ctttccattt ctctgagaac ctgcttcttg 780 aagattcata cgtcaacttg gacgaaatca acgcgtgttt ttcgcgtgac ggagacaaat 840 tgaccttttc ttttgcatca gagagtactc ttaattactg ccacagtttt tctaatattc 900 ttaagtatgt gtgcaaaact tacttcccgg cctctaatag agaggtttac atgaaggagt 960 ttttagtcac cagggttaat acctggtttt gtaagttttc tagaatagat acttttcttt 1020 tgtacaaagg agtagcccat aaaagtgtag atagtgagca gttttatact gctatggaag 1080 acgcatggca ttacaaaaag acacttgcaa tgtgcaacag cgagagaatt ctccttgagg 1140 attcatcatc agtcaattac tggtttccca aaatgaggga tatggtcatc ataccattat 1200 tcgacatttc tttggagact agcaagaggt cgcgcaagga agtcttagtg tccaaggatt 1260 tcgtgtttac tgtgcttaac cacattcgca cataccaggc gaaagctctt acatacgcaa 1320 atgttttgtc cttcgtcgaa tctattcgat cgagggtaat cataaacggt gtgacagcga 1380 ggtctgaatg ggatgtggac aaatctttgt tacaatcctt gtccatgacg tttttcctac 1440 atactaaact tgccgttctt aaggacgatt tactgatcag caaatttagt cttggttcaa 1500 aaacagtgtg tcagcatgtg tgggatgaga tttcgctggc gtttgggaat gcttttccct 1560 ctgtgaaaga gaggcttttg aacaagaaac ttattagagc ggcaggcgac gcattagaga 1620 tcaaagtgcc tgatctatat atcactttcc acgacagatt ggtggctgag tataaatcct 1680 ctgtggacat gcctgctcta gacattagga agaggatgga agaaacggaa gtgatgtaca 1740 atgcactctc agagttatca gtgttaaggg agtctgacaa atttgatgtt gatgtttttt 1800 cccagatgtg caaatctttg gaagtcgacc caatgacagc agcgaaggtt atagtcgcgg 1860 tcatgagcaa tgagagcggt ctgactctca catttgaacg accaacagag gcgaatgttg 1920 cgcaagcttt gcaagatcaa gagaaggcct cagaaggtgc cttggtagtt acctcgagag 1980 aggttgaaga accgtccatg aagggttcta tggccagagg agagttacaa ttagctggct 2040 ttgctggaga tcatccggag tcgtcctatt ctaggaacga ggagatagag tctttagagc 2100 agtttcacat ggcaacggca gattcgttaa ttcgtaagca aatgagttcg attgtgtaca 2160 cgggtccgat taaagttcag caaatgaaaa actttatcga tagcctggta gcatcactat 2220 ctgctgcggt gtcaaatctc gtcaagatcc tcaaagatac agctgctatt gaccttgaaa 2280 cccgtcaaaa gtttggagtt ttggatgtag catctaggaa gtggttaata aaaccgacgg 2340 ccaagagtca tgcatggggt gttgttgaaa cccacgcgag gaagtatcat gtggcacttt 2400 tggaatatga tgagcaaggt atagtaacat gcgacgattg gagaagagta gctgtcagct 2460 ctgagtctgt tgtttattcc gacatggcga aactcagaac tctgcgcaga ctacttcgag 2520 acggagaacc gcatgttagc aacgcaaagg ttgttcttgt ggacggagtt ccgggttgtg 2580 gaaaaacaaa agaaattctc tcaagagtca attttgatga ggatcttatt ctagttcctg 2640 gaaagcaggc cgcggaaatg atcagaagac gagcgaattc ctcagggatt attgtggcca 2700 cgaaggacaa cgttagaacc gttgattctt tcatgatgaa ttttgggaaa accacacgct 2760 gtcagttcaa gaggctattc attgatgaag gtttgatgtt gcatactggt tgtgttaatt 2820 tccttgtggc gatgtcattg tgcgatgttg catatgttta cggagacaca cagcaaattc 2880 catacatcaa cagagtttca ggattcccgt accccgccca tttttccaaa ttagaagttg 2940 acgaggttga gacacgcaga accacactcc gatgtcctgc cgatgtcaca cactatctga 3000 acagaagata tgagggcttt gttgtaagta cttcttcggt taagaagtct gtttcgcagg 3060 agatggttag cggagccgct gtgattaacc cgatctcaaa gcctttgcat ggtaagatct 3120 tgacttttac ccagtcggat aaagaagcac tactttcaag agggtattct gaagttcaca 3180 ctgtgcacga agtgcaaggc gagacatatt cagatgtttc actagtcagg ttgaccccta 3240 caccaatctc catcatcgca ggtgacagtc cgcatgtttt ggttgcattg tcgaggcaca 3300 cttgttcgct taagtactac actgttgtta tggatccttt agttagcatt attagagatt 3360 tagagaaact tagctcgtac ttgttggata tgtataaggt cgatgcaggc attcaatagc 3420 aattacagat tgactcggtg tttaaaggtt caaatctttt tgtggcagcg ccgaagaccg 3480 gcgacatttc tgatatgcag ttttactatg acaagtgtct cccaggcaat agcaccatga 3540 tgaataattt tgatgctgtt accatgaggt tgactgacat ctctttgaat gtcaaagatt 3600 gcatattgga tatgtctaag tctgttgctg cgcctaaaga tcagatcaaa ccactaatac 3660 ctatggtacg aacggcggca gaaatgccac gccagactgg actattggaa aatttggtgg 3720 cgatgataaa aagaaacttt aacgcacctg agttgtctgg tatcattgat attgaaaata 3780 ctgcatcctt agttgtagat aagtttttcg atagttattt gcttaaagaa aaaagaaaac 3840 caaataaaaa tgtttctttg ttcagtagag agtctctcaa tagatggtta gaaaagcagg 3900 aacgggtgac aataggtcag ctcgcagatt ttgattttgt ggacttgcca gcagttgatc 3960 agtacagaca catgatcaaa gcacaaccta agcagaaact agacacttcg atccaaacgg 4020 agtacccagc tttacagacg attgtgtacc attcaaaaaa gatcaacgca atttttggcc 4080 cgttgtttag tgagctcact aggcaattac tggacagtgt tgattcgagc agatttttgt 4140 ttttcacaag aaagacaccg gcgcaaattg aggatttctt tggagatctt gacagtcacg 4200 taccaatgga tgtcttggag ctagatatat caaagtatga caaatctcag aatgaattcc 4260 actgtgcagt agaatacgag atctggcgaa gattgggttt tgaagacttc ttgggagaag 4320 tatggaagca agggcacaga aaaaccaccc tcaaggatta taccgcaggt atcaagactt 4380 gcatttggta tcaaagaaag agcggggatg tcacgacgtt cattggaaac acagtgatca 4440 ttgctgcatg tttggcctcg atgcttcgga tggaaaaaat aatcaaggga gccttttgcg 4500 gtgacgatag tctgctgtac ttcccaaagg gttgtgagtt cccggatatt caacattctg 4560 ttaatcttat gtggaacttt gaggcaaaac tttttaaaaa gcagtatgga tacttttgcg 4620 gaaggtatat aatacatcac gacagaggat gcattgtgta ttacgatccc ctgaagttga 4680 tctcgaaact tggtgctaaa cacatcaagg attgggaaca cttggaggag ttcagaaggt 4740 ctctttgtga tgttgctgtt tcgttgaaca attgtgcgta ctacacacag ttggacgacg 4800 ctgtatggga ggttcataag accgcccctc caggttcgtt tgtttataaa agtttggtta 4860 agtatctgtc tgataaagtt ctttttagaa gtttgtttat aaatggctct agttgttaaa 4920 gggaaagtga acatcaatga gtttatcgac ctgacaaaaa tggagaaaat cttaccgtcg 4980 atgtttacac ctgtgaagag tgtcatgtgt tccaaagtcg ataaaataat ggttcatgag 5040 aatgaatcat tgtcagaggt gaaccttctt aaaggagtta agcttattga tagtggatac 5100 gtttgtttag ccggtctggt cgtcacaggc gagtggaact tgccagacaa ttgcagagga 5160 ggtgtgagcg tgtgtctggt ggacaaaagg atggaaagag cagacgaagc tactcttgga 5220 tcctattaca cagctgcagc aaagaaaaga tttcagttca aggtcgttcc caattatgct 5280 ataaccaccc aggacgcaat gaaaaacgtc tggcaagtgt tagtcaatat tagaaatgtg 5340 aagatgtcag cgggtttctg tccgctttct ctggagtttg tgtcggtgtg tattgtatat 5400 agaaataaca taaaaatagg tttgagggag aaaattacaa acgtgagaga cgggggtccc 5460 atggaactta cagaagaagt tgttgatgag ttcatggaag atgtacctat gtcaattagg 5520 cttgcaaagt ttcgatctcg aaccggaaaa aagagtgttg tccctaaagg aaattttagt 5580 agtagggatc ggtcacagcc gaacaagaac tatggaaatg ctaaagattt tggaggaatg 5640 agttttaaaa agaataattt aatcgatgat ggatcggaga cttctgtcgc cgaatcggat 5700 tcgttttaat tatgtcttac aatatcaata ctccatctca gttcgtgttc ttgtcatcag 5760 cgtgggccga cccgatagag ttgattaatt tatgtactaa tgccttaggt aatcagttcc 5820 aaacacaaca agctcgaact gtcgttcaaa gacaattcag tgaggtgtgg aaaccttcac 5880 cacaagtaac tgtcaggttc cctgatagtg actttaaggt gtacaggttc aatgctgttt 5940 tagatccgct agtcactgca ctgttaggtg cttttgacac tagaaataga ataatagaag 6000 ttgaaaatca agcgaacccc tcgactgctg aaacgttaga tgctactcgt agagtagacg 6060 acgcaacggt ggccataagg agcgcaataa ataatttaat agtagaattg accagaggaa 6120 ctggatctta caatcggagc tctttcgaga gctcttctgg tttggtttgg acctctagtc 6180 cagcaacttg aggtagtcaa gatgcttaat aagtaacgga ttgtgtccgt aatcacacgt 6240 ggtgcgtacg ataacgcata gtgtttttcc ctccacttaa atcgaagggt tgtgtcttgg 6300 atcgcgcggg tcaagtgtat atggtgcata tacatccgca ggcacgtaat aaagcgaggg 6360 gttcgaatcc ccccgttacc cccggtaggg gccca 6395 //