ID D42080; SV 1; linear; genomic RNA; STD; VRL; 2214 BP. XX AC D42080; XX DT 19-NOV-1994 (Rel. 41, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 3) XX DE Cucumber mosaic virus (strain E5) RNA3 encoding movement protein 3a and DE viral coat protein, complete cds. XX KW coat protein; movement protein 3a; RNA 3. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2214 RA Chaumpluk P.; RT ; RL Submitted (10-NOV-1994) to the INSDC. RL Piyasak Chaumpluk, Iwate Biotechnology Research Center, Department of RL Genetic Engineering; 22-174-4 Narita, Kitakami, Iwate 024, Japan RL (Tel:0197-68-2911, Fax:0197-68-3881) XX RN [2] RP 1-2214 RA Chaumpluk P., Sasaki Y., Nakajima N., Nagano H., Nakamura I., Suzuki K., RA Mise K., Okuno T., Furusawa I.; RT "Phylogenetic relationships among ten Japanese strains of cucumber mosaic RT virus based on amino acid sequence alignment of 3a and coat proteins"; RL Unpublished. XX RN [3] RA Chaumpluk P., Sasaki Y., Nakajima N., Nagano H., Nakamura I., Suzuki K., RA Mise K., Inouye N., Okuno T., Furusawa I.; RT "Six new subgroup I members of Japanese cucumber mosaic virus as determined RT by nucleotide sequence analysis on RNA3's cDNAs"; RL Nippon Shokubutsu Byori Gakkaiho 62:40-44(1996). XX DR MD5; 3e1c9d1873d3456e5c76a0604005fc3d. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC112760; 10400773. DR EuropePMC; PMC3550734; 23637513. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2214 FT /organism="Cucumber mosaic virus" FT /strain="E5" FT /mol_type="genomic RNA" FT /clone="IWE5/23" FT /db_xref="taxon:12305" FT 5'UTR 1..118 FT CDS 119..958 FT /product="movement protein 3a" FT /note="putative cell to cell movement protein (CMV-CS 3a FT protein)" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q787R2" FT /protein_id="BAA07676.1" FT /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK FT SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL" FT misc_feature 959..1255 FT /note="putative intercistronic region" FT misc_feature 1117..1128 FT /note="putative tRNA ICR2-like region" FT CDS 1256..1912 FT /product="coat protein" FT /note="putative coat protein CP" FT /db_xref="GOA:O40981" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="UniProtKB/Swiss-Prot:O40981" FT /protein_id="BAA07677.1" FT /translation="MDKSESTSVGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT FT LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV FT SRIQIRVNPLRKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN FT NKLLYDLLAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV" FT misc_feature 2082..2214 FT /note="tRNA-like structure" XX SQ Sequence 2214 BP; 522 A; 521 C; 522 G; 649 T; 0 other; gtaatctaca ctgtgtgtgt gcgtgtgtgt gtgtcgagtc gtgttgtccg cacatttgag 60 tcgtgttgtc cgcacatatt ttatttttct ttgtacagtg tgttagattt cccgaggcat 120 ggctttccaa ggtaccagta ggactttaac tcaacagtcc tcagcggcta cgtctgacga 180 tcttcaaaag atattattta gccctgaagc cattaagaaa atggctactg agtgtgacct 240 aggccggcat cattggatgc gcgctgataa tgctatttca gtccggcccc tcgttcccga 300 agtaacccac ggtcgtattg cttccttctt taagtctgga tatgatgttg gtgaattatg 360 ctcaaaagga tacatgagcg tccctcaagt gttgtgtgct gttactcgaa cagtttccac 420 cgatgctgaa gggtctttga gaatttactt agctgatcta ggcgacaagg agttatctcc 480 tatagatggg caatgcgttt cgttacacaa ccatgatctt cccgctttgg tgtctttcca 540 acctacgtat gattgtccta tggaaacagt tgggaatcgt aagcggtgtt ttgctgtcgt 600 tatcgaaaga catggttaca ttgggtatac cggcaccaca gctagcgtgt gtagtaattg 660 gcaagcaagg ttttcatcta agaataacaa ctacactcat atcgcagctg ggaagactct 720 agtactgcct ttcaacagat tagctgagca aacaaaaccg tcagctgtcg ctcgcctgtt 780 gaagtcgcaa ttgaacaaca ttgaatcttc gcaatatttg ttaacgaatg cgaagattaa 840 tcagaatgcg cgcagtgagt ccgaggaatt aaatgttgag agccctcccg ccgcaatcgg 900 gagttcttcc gcgtcccgct ccgaagcctt cagaccgcag gtggttaacg gtctttagca 960 ctttggtgcg tattagtata taagtatttg tgagtctata cataatacta tatctatagt 1020 gtcctgtgtg agttgataca gtagacatct gtgacgcgat gccgtgttga gaagggaaca 1080 catctggttt tagtaagcct acatcatagt tttgaggttc aattcctctt actccctgtt 1140 gagcccctta ctttctcatg gatgcttctc cgcgagattg cgttattgtc tactgactat 1200 ttagagagtg tgtgtgctgt gttttctcct ttgtgtcgta gaattgagtc gagtcatgga 1260 caaatctgaa tcaaccagtg ttggtcgtaa tcgtcgacgt cgtccacgtc gtggttcccg 1320 ctccgccccc tcctccgcgg atgctaactt tagagtcttg tcgcagcagc tttcgcgact 1380 taataagacg ttagcagctg gtcgtccaac tattaaccac ccaacctttg tagggagtga 1440 acgctgtaga cctggataca cgttcacatc tattacccta aagccaccaa aaatagaccg 1500 tgggtcttat tacggtaaaa ggttgttact acctgattca gtcacggaat atgataagaa 1560 acttgtttcg cgcattcaaa ttcgagttaa tcctttgcgc aaatttgatt ctaccgtgtg 1620 ggtgacagtc cgtaaagttc ctgcctcctc ggacttatcc gttgccgcca tctctgctat 1680 gtttgcggac ggagcctcac cggtactggt ttatcagtac gccgcatctg gagtccaagc 1740 taacaacaaa ttgttgtatg atcttttggc gatgcgcgct gatataggcg acatgagaaa 1800 gtacgccgtc ctcgtgtatt caaaagacga tgcactcgag acggacgagc tagtacttca 1860 tgttgacatc gagcaccaac gcattcccac atctggggtg ctcccagtct aattccgtgt 1920 ttccagaacc ctccctccga tttctgtggc gggagctgag ttgacagttc tgctataaac 1980 tgtctgaagt cactaaacgt tttacggtga acgggttgtc catccagctt acggctaaaa 2040 tggtcagtcg tggagaaatc cacgccagca gatttacaaa tctctgaggc gcctttgaaa 2100 ccatctccta ggtttcttcg gaaggacttc ggtccgtgta cctctagcac aacgtgctag 2160 tttcagggta cgggtgcccc cccactttcg tggggggcct ccaaaaggag acca 2214 //