ID D30753; SV 1; linear; genomic RNA; STD; VRL; 2962 BP. XX AC D30753; XX DT 30-NOV-1994 (Rel. 41, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 10) XX DE Potato mop-top virus genes for 51K protein, 13K protein, 21K protein and 8K DE protein, complete cds. XX KW . XX OS Potato mop-top virus OC Viruses; Riboviria; Virgaviridae; Pomovirus. XX RN [1] RP 1-2962 RA Reavy B.; RT ; RL Submitted (19-MAY-1994) to the INSDC. RL Brian Reavy, Scottish Crop Research Institute, Virology; Invergowrie, RL Dundee DD2 5DA, United Kingdom (E-mail:virbr@scri.sari.ac.uk, RL Tel:44-382-532082(ex.2123), Fax:44-382-562426) XX RN [2] RP 1-2962 RX PUBMED; 7996148. RA Scott K.P., Kashiwazaki S., Reavy B., Harrison B.D.; RT "The nucleotide sequence and poteto mop-top virus RNA 2: a novel type of RT genome organization for a furovirus"; RL J. Gen. Virol. 75:3561-3568(1994). XX DR MD5; da48d332c102d5fed3a43e2565136d17. DR RFAM; RF00233; Tymo_tRNA-like. XX FH Key Location/Qualifiers FH FT source 1..2962 FT /organism="Potato mop-top virus" FT /isolate="Todd" FT /mol_type="genomic RNA" FT /clone_lib="Td2-1, lambda ZAPII.PPMT2 & 4-2 and FT pBluescript" FT /clone="Tb2, pPMT2, pPMT4" FT /db_xref="taxon:37128" FT stem_loop 46..110 FT /note="putative" FT CDS 369..1760 FT /codon_start=1 FT /product="51K protein" FT /function="Presumably cell to cell movement" FT /note="NTP binding site motif present at amino acids 215 - FT 222" FT /note="putative" FT /note="triple gene block protein" FT /db_xref="GOA:Q85291" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q85291" FT /protein_id="BAA06412.1" FT /translation="MESVFNGSRPHRVKKDLPDRVNPVNTQGSSGTTGNAFIKNNNNKT FT QNWKPGSGPGNRNEGDQTKNNKSDLQQPSEVHPENQVRPESSTGESVKQQSEPHRVLED FT KKQSGKTAGSSVRIPEEGGGGLGSANYLGKRQLDFVAKLCVESGFKSTGKPLKRYPAEF FT FKSSGLLEKFDKYLSSRLDKGCNISQRESEVVLKNLRSKRAEQSFLAGAVTGVPGSGKT FT TLLRKVQCEGGFNSIVILGNPRSKTEFSNLPSCYTAKEILLLGIAIKCEVLLIDEYTLL FT TSGEILLLQKITNSRIVILFGDRAQGSSNTLCSPEWLQVPVIFQSLTSRRFGKATANLC FT RRQGFDFEGGEHEDKVVESPYEGSSPATDINIVFSESTREDLLECGIESTLVSDVQGKE FT YKTVTLFIPDEDREYLTNAHLRSVAFSRHKFVLEIRCNPELFMQLINGELTSKQQPQTD FT RYGPE" FT CDS 1747..2106 FT /codon_start=1 FT /product="13K Protein" FT /function="Presumably cell to cell movement" FT /note="putative" FT /note="triple gene block protein" FT /db_xref="GOA:Q85292" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q85292" FT /protein_id="BAA06413.1" FT /translation="MVRNNEIGARPNKYWPVVAAVVAICLFGFLTVTNQKHATQSGDNI FT HKFANGGLYRDGSKSIKYNCNNPRAYNGSSSNNTFSQLFLPVLLIGAALYAYLWFTRPD FT CSVTCRGDCCRSYGG" FT CDS 1961..2533 FT /codon_start=1 FT /product="21K protein" FT /function="Presumably cell to cell movement" FT /note="putative" FT /note="triple gene block protein" FT /db_xref="GOA:Q85293" FT /db_xref="InterPro:IPR007617" FT /db_xref="UniProtKB/TrEMBL:Q85293" FT /protein_id="BAA06414.1" FT /translation="MDPPVIIHSPNCSCQFCSSELPSTHTCGSQDQTVPLHVEATAAGH FT MEVKNFSLQYVLLVAFVSVLLGFSFCVYLKSMSNDEASDTTYYYQDLNSVEIKLGKNPL FT DPEVIKAVHSFQEFPYGNIASIRREAEFDVQNDESSAVVLSGSNNNRRQVASTPCENNV FT LLKLWKDDLSFTIIAVTVLVGVMLARC" FT CDS 2461..2667 FT /codon_start=1 FT /product="8K protein" FT /note="Cysteine rich protein" FT /db_xref="GOA:Q85294" FT /db_xref="UniProtKB/TrEMBL:Q85294" FT /protein_id="BAA06415.1" FT /translation="MERRFIVYYNCSDCACGRYVSSLLTMSGAYVNVCVCIVFFILVYL FT SSCYNMRVLGFLRVCIYLYKLCR" FT repeat_region 2675..2805 FT /rpt_type=DIRECT FT /rpt_unit_range=2675..2725 FT /note="location is not clear" FT /note="putative" FT stem_loop 2704..2725 FT stem_loop 2782..2803 XX SQ Sequence 2962 BP; 847 A; 541 C; 694 G; 880 T; 0 other; gtatttcaac tctacctagc cgagtgctta cttgagtaaa ttcctgaggt cttttctaaa 60 ttctaatttc gcccgtcttt acgaaagaga ttgaatttag aaaagacctc gatctaacga 120 gtcgcgaaca attgatcgac tttagtcctc tctgttggtc atttgaaaac cgtctagaat 180 cacatttcgc ccgtttgtac gatagaagtt gattcttgga agcttttcaa tctaacagat 240 tgtgagtatt gctggtctct ggtccttttc gttgggaaag gttgcagatt tcaatatccc 300 gccgctaagc gataggggtt tgtatttgtt aacttggttc gaattcctaa ttgtttcacg 360 attcttgtat ggaaagtgta ttcaacggaa gtagaccaca cagagtgaag aaggatttgc 420 ctgatagggt gaatccggtt aacactcagg gatcttctgg tacaactggt aacgcgttta 480 taaagaataa taataataaa acacaaaatt ggaaacctgg gagcggtcct ggtaacagga 540 acgagggcga ccaaacaaaa aacaacaagt ccgacttgca acaaccaagc gaagtgcacc 600 ccgaaaatca ggtgcgacca gaatcatcaa ctggtgagtc cgtaaagcaa caatcagaac 660 cacaccgtgt gcttgaagat aaaaagcaat cagggaaaac cgcaggctca agcgtgagaa 720 tacctgaaga aggtggtggt ggtttagggt cagcgaacta cctcgggaag agacagctcg 780 attttgtcgc taaactttgt gttgaaagtg gattcaaatc tactggtaag cccttgaaaa 840 ggtatccggc agaatttttc aaaagttctg gtctgctaga aaaatttgac aagtacttaa 900 gttcccgttt ggataaaggt tgcaatattt cgcagaggga atctgaagta gttttaaaga 960 atttgaggtc gaagagggcc gaacagtcgt ttttggctgg tgccgtgact ggtgttccag 1020 gtagcggaaa aactactttg ctgaggaaag tccagtgtga aggaggtttt aattccattg 1080 tgattttggg taatcccaga tcaaagactg agttctcgaa tctgcctagt tgttatacag 1140 ctaaggagat attgttactc gggattgcaa ttaagtgtga ggtgctttta atcgacgaat 1200 atactctttt gacgagtgga gaaatattac tactgcagaa gatcactaat agtcggatag 1260 ttatactatt cggagacaga gcccaaggca gtagtaatac attgtgcagc ccggagtggt 1320 tacaggtacc cgttatattt caatctctga cgagtaggag atttggtaaa gctacagcga 1380 atctttgcag aaggcaaggt tttgattttg aaggtggtga acacgaggac aaggttgtag 1440 agagtcccta cgaagggagt agtccagcta ctgatattaa cattgtgttc tctgaaagca 1500 ctcgtgaaga tttacttgag tgcggtatag agtctacgct tgttagtgac gtgcaaggaa 1560 aagagtacaa aactgtgact ttgttcatac ctgacgagga ccgagagtat ctgaccaacg 1620 cccacctacg ttccgtcgct ttttcccgac ataagtttgt gcttgaaatc cgttgtaatc 1680 cagaactgtt catgcagttg attaacggag aattgacatc gaaacagcaa ccacaaacag 1740 acaggtatgg tccggaataa cgaaattgga gcgcgaccaa ataaatattg gccggtagtt 1800 gcggcagtag ttgcaatttg tcttttcggt tttttaacag ttaccaatca aaaacacgct 1860 actcaatcag gagataatat acataagttt gctaacggtg gcctgtacag ggacggttct 1920 aagagtatta agtataattg taataatccc agagcttata atggatcctc cagtaataat 1980 acattctccc aattgttctt gccagttttg ctcatcggag ctgccctcta cgcatacttg 2040 tggttcacaa gaccagactg ttccgttaca tgtagaggcg actgctgcag gtcatatgga 2100 ggttaaaaat ttttctttgc agtatgtttt gttagtggct tttgtcagtg ttttgttagg 2160 attctctttt tgtgtgtact tgaagagtat gtctaatgat gaagcttctg atacgactta 2220 ctattaccag gatttaaatt ctgttgaaat taaactggga aagaacccgc ttgatccaga 2280 agtcattaag gctgtacaca gctttcagga atttccttat gggaacattg catcgataag 2340 acgtgaagct gaatttgatg ttcaaaatga tgagtctagt gcggtggttc tgtccggttc 2400 taataataat agaaggcaag tagcaagtac gccctgtgaa aataatgtat tacttaagtt 2460 atggaaagac gatttatcgt ttactataat tgcagtgact gtgcttgtgg gcgttatgtt 2520 agctcgttgt taacaatgtc cggtgcttac gtgaatgtat gtgtttgtat tgtatttttc 2580 attctcgtgt atttgtccag ttgttataat atgagggtcc taggtttttt acgggtatgc 2640 atatacctat ataaattatg ccgttgacac tacgttaagt gttagtgctt acaggacttc 2700 ggtctgtggt tcacttaaat cgaaccattg gagtaatccg acgttaatat cacgttaagt 2760 attggtgctt ccagggttaa accgtggttc accttaatcg aaccagtctc atttgagaca 2820 aaactgactt cctagctgtt tttgagataa ttccaaaaaa ctcattatcc ggcttaggga 2880 agagcggcca gttgctgctg cgatcaagac acgatcgttc aaaagggtgc aactcccccc 2940 cccttggagg gtatccaaga cc 2962 //