ID D28778; SV 1; linear; genomic RNA; STD; VRL; 3358 BP. XX AC D28778; XX DT 30-MAR-1994 (Rel. 39, Created) DT 31-MAY-2008 (Rel. 96, Last updated, Version 6) XX DE Cucumber mosaic virus gene for 1a, complete cds, segment 1. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3358 RA Hsu Y.-H.; RT ; RL Submitted (02-MAR-1994) to the INSDC. RL Contact:Yau-Heiu Hsu National Chung Hsing University, Agricultural RL Biotechnology Lab.; 250 Kuo-Kung Road, Taichung, Taiwan 402, RC XX RN [2] RX DOI; 10.1007/BF01384346. RX PUBMED; 7503683. RA Hsu Y.-H., Wu C.W., Lin B.Y., Chen H.Y., Lee M.F., Tsai C.H.; RT "Complete genomic RNA sequences of cucumber mosaic virus strain NT9 from RT Taiwan"; RL Arch. Virol. 140(10):1841-1847(1995). XX DR MD5; c7278254aa66fa39ec259bb5af9fa295. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC136033; 11884564. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3358 FT /organism="Cucumber mosaic virus" FT /segment="1" FT /strain="NT9" FT /mol_type="genomic RNA" FT /db_xref="taxon:12305" FT CDS 95..3076 FT /codon_start=1 FT /product="1a" FT /db_xref="GOA:O40976" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:O40976" FT /protein_id="BAA21693.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRTAFSETEDATPLSEKLNSTIFSHVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASYISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNVECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVIEVSDRPEAPSSTPDDTADVCGKEQEVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGFNERGLGPKSDGELYIVNSECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEHCGVLNGDLIAEC FT IARA" XX SQ Sequence 3358 BP; 834 A; 745 C; 815 G; 964 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaacta ccctttgaaa 60 acctctcttt cttgatcttt tctctgaaat tcctatggcg acgtcctcgt tcaacatcaa 120 tgaattggta gcctcccacg gcgataaagg actgctcgcg accgccctcg ttgataagac 180 agctcatgag cagcttgagg agcaattaca gcatcaacgt aggggccgta aggtctacat 240 ccggaacgtt ctgggtgtaa aggattccga ggtcatccgg aatcggtatg gagggaagta 300 cgacctccat cttacccagc aggagtttgc tccccacggc ctagctggtg ccctccgctt 360 gtgtgaaact ctcgattgtc tagactcttt cccttcttca ggtctgcggc aggacctcgt 420 cttagacttc ggaggaagtt gggtcacaca ttacctccgc ggacacaacg tacactgctg 480 ttccccttgt ttgggtatcc gcgataaaat gcgccatgcg gaacgtttaa tgaacatgcg 540 caagatcatc ttgaacgatc cacaacagtt cgatggtcga cagccggatt tctgcactca 600 cccggctgca gattgcaaag tacaagccca ctttgctata tctattcatg gaggttacga 660 tatgggtttt agaggacttt gtgaagcaat gaacgctcac ggaaccacta ttttgaaggg 720 aacgatgatg ttcgatggtg cgatgatgtt tgacgaccag ggtgtaatac ctgaacttaa 780 ttgccagtgg agaaagatca ggactgcttt ctctgaaact gaggacgcca cgccgttgtc 840 tgagaaactt aattccacaa tattttccca tgtgcgtaaa ttcaagacca tggtggcctt 900 tgattttatc aatgagtcta ccatgtctta tgttcatgat tgggagaata taaagtcttt 960 tcttacagat cagacctact cataccgagg gatgacttac ggtattgagc gttgcgttat 1020 tcacgccggc attatgacgt ataagatcat tggtgtacct gggatgtgtc cacccgaact 1080 cattcgacat tgtatttggt tcccctctat taaggactat gttggtctaa agattcccgc 1140 gtcgcaggac ttggttgaat ggaaaacagt gcgtatttta acgtcaacat tacgtgagac 1200 ggaagagatt gctatgaggt gttacaacga taagaaagcg tggatggaac aatttaaagt 1260 tattttaggt gttctatctg cgaaatcatc taccattgtt atcaatggta tgtccatgca 1320 atctggcgag cgtatcgaca tcaacgatta tcattatatc ggtttcgcca tccttcttca 1380 cacaaaaatg aagtacgaac agttgggaaa aatgtacgat atgtggaatg cttcgtatat 1440 ttcgaagtgg tttgcagcgt tgactcgtcc gctgcgtgtg tttttctcca gcgttgttca 1500 cgcattgttt ccgactttga gaccgcgcga ggaaaaagaa ttcctgatta agctctccac 1560 ctttgtaact ttcaatgtag agtgctcatt tgacggtgga gaggaatggg acgtgatatc 1620 atctgctgca tacgttgcta cacaggctgt taccgatggg aaagttttgg ctgcgcagaa 1680 agccgagaag ctcgctgaga agcttgcaca acccgtgatt gaggtatcgg acagacctga 1740 ggcgccatct tcaacgcctg atgatacagc tgatgtttgt ggaaaggagc aagaggtttc 1800 ggaacttgac tccctatcag ctcaaacacg ttcccccatc actagagttg ctgaaagggc 1860 tactgctatg ttagagtatg ccgcttatga gaaacagtta catgacacta cagtgtctaa 1920 tctgaagcgt atttggaata tggcgggtgg tgatgacaag agaaactccc tcgagggtaa 1980 tttgaagttt gtttttgaca cgtatttcac tgttgacccc atggtgaata tccatttctc 2040 cacgggtcgg tggatgcgtc ctgtgcctga gggaattgtt tactctgttg gttttaatga 2100 acgcggatta ggtccgaagt ctgatgggga gctttacatt gttaatagtg agtgcgtgat 2160 ttgtaatagt gagtctttat ctactgtcac tcgctcgctt caagccccaa ccggaactat 2220 tagtcaagtc gacggagttg caggttgtgg gaagaccaca gcaataaaat caatttttga 2280 gccgtccact gacatgatcg ttaccgcgaa caagaaatcc gcccaagacg ttcgtatggc 2340 actctttaaa tcgtcggatt ccaaagaagc ttgcaccttc gttcgtactg ccgattctgt 2400 cctacttaat gaatgtccaa ctgttagtag ggttttggtc gatgaagttg tgctgcttca 2460 ctttggtcaa ttgtgtgctg tcatgtctaa gctgaaggct gtgcgagcta tatgtttcgg 2520 ggattctgag cagattgcct tctcttctcg tgatgcttcg tttgacatgc gtttctctaa 2580 gattattcct gatgaaacta gtgatgcgga taccacattc cgtagcccac aagatgtcgt 2640 gcctcttgtg cgtctgatgg ctacgaaggc tctcccgaaa ggaactcatt cgaaatacac 2700 taaatgggtt tctcaatcta aggtgaaaag atctgttacg tctcgtgcca tcgccagtgt 2760 gacattggtt gatttagatt cttccaggtt ttatatcacg atgactcaag ctgacaaggc 2820 ttcactgatt tcgagagcga aagagatgaa cttaccgaag accttttgga atgaaaggat 2880 taagactgtg catgagtctc agggtatctc tgaagaccac gttactttgg taagactgaa 2940 gagcacgaaa tgtgacctgt tcaaacagtt ttcgtactgt cttgttgcct tgacaagaca 3000 taaggtcacc ttccgctacg agcattgtgg tgtattaaac ggcgatttaa tcgccgaatg 3060 tattgctcgt gcttagcggc ttccctcctt cgggcgggat ctgagttggc ggtaatctac 3120 aaaccgtctg aagtcactaa acgctttgcg gtgaacgggt tgtccatcca gcttacggct 3180 aaaatggtca gtcgtggaga aattcacgcc agtagactta caagtctctg aggtgccttt 3240 gaaaccatct cctaggtttc ttcggaagga cttcggtccg tgtacttcta gcacaagatg 3300 ctagtttcag ggtacgggca ccccccccat ttaatggggg gcctcctcaa ggagacca 3358 //