ID   D28489; SV 1; linear; genomic RNA; STD; VRL; 2211 BP.
XX
AC   D28489;
XX
DT   31-MAY-1996 (Rel. 47, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 6)
XX
DE   Cucumber mosaic virus RNA3, complete sequence.
XX
KW   3a; coat protein; CP; movement protein.
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2211
RA   Chaumpluk P.;
RT   ;
RL   Submitted (04-FEB-1994) to the INSDC.
RL   Piyasak Chaumpluk, Iwate Biotechnology Research Center, Department of
RL   Genetic Engineering; 22-174-4 Narita, Kitakami, Iwate 024, Japan
RL   (Tel:0197-68-2911, Fax:0197-68-3881)
XX
RN   [2]
RA   Chaumpluk P., Sasaki Y., Nakajima N., Nagano H., Nakamura I., Suzuki K.,
RA   Mise K., Inouye N., Okuno T., Furusawa I.;
RT   "Six new subgroup I members of Japanese cucumber mosaic virus as determined
RT   by nucleotide sequence analysis on RNA3's cDNAs";
RL   Nippon Shokubutsu Byori Gakkaiho 62:40-44(1996).
XX
DR   MD5; 13c0620ae0986bb70ce6053d87d12cd3.
DR   EuropePMC; PMC112760; 10400773.
DR   EuropePMC; PMC3550734; 23637513.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2211
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="3"
FT                   /strain="CS"
FT                   /mol_type="genomic RNA"
FT                   /clone="CS3/3-42"
FT                   /note="isolated from statice Limonium sinuatum (chlorotic
FT                   spot)"
FT                   /db_xref="taxon:12305"
FT   5'UTR           1..117
FT   CDS             118..957
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:Q66142"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q66142"
FT                   /protein_id="BAA05850.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHSRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   misc_feature    958..1254
FT                   /note="put. inter-cistronic region"
FT   misc_feature    1115..1127
FT                   /note="put. tRNA ICR2-like region"
FT   CDS             1255..1911
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q66143"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q66143"
FT                   /protein_id="BAA05851.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLRKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
FT   misc_feature    2081..2211
FT                   /note="tRNA-like structure"
XX
SQ   Sequence 2211 BP; 515 A; 526 C; 526 G; 644 T; 0 other;
     gtaatctaca ctgtgtgtgt gcgtgtgtgt gcgtcgagtc gtgttgtccg cacatttgag        60
     tcgtgctgtc cgcacatttt gttttatctt tgtacagtgt gttagatttc ccgaggcatg       120
     gctttccaag gtaccagtag gactttaact caacagtcct cagcggctac gtctgacgat       180
     cttcaaaaga tattatttag ccctgaagcc attaagaaaa tggctactga gtgtgaccta       240
     ggccggcatc attggatgcg cgctgataat gctatttcag tccggcccct cgttcccgaa       300
     gtaacccaca gtcgtattgc ttccttcttt aaatctggat atgatgttgg tgaattgtgc       360
     tcaaaaggat acatgagcgt ccctcaagtg ttatgtgctg ttactcggac agtctctact       420
     gatgctgaag ggtccttgag aatttactta gctgatctag gtgacaagga gttatctcct       480
     atagatgggc aatgcgtttc gttacacaac catgatcttc ccgctttggt gtctttccaa       540
     cctacgtacg actgtcctat ggaaacagtt gggaatcgta agcggtgttt tgctgtcgtt       600
     atcgaaagac atggttacat tgggtatacc ggtaccacag ctagcgtgtg tagtaattgg       660
     caagcaaggt tttcttctaa gaataacaac tacactcata tcgcagctgg gaagactcta       720
     gtactgcctt tcaacagatt agctgagcaa acaaaaccgt cagctgtcgc tcgcctgttg       780
     aagtcgcaat tgaacaacat tgaatcttcg caatatctgt taacgaacgc gaagattaat       840
     caaaatgcgc gcagtgagtc cgaggaatta aatgttgaga gccctcccgc cgcaatcggg       900
     agttcttccg cgtcccgctc cgaagccttc agaccgcagg tggttaacgg tctttagcac       960
     tttggtgcgt attagtatat aagtatttgt gagtctgcac ataatactat atctatagtg      1020
     tcctgtgtga gttgtaacag tagacatctg tgacgcgatg ccgtgttgag aagggaacac      1080
     atctggtttt agtaagccta catcatagtt ttgaggttca attcctctta ctccctgttg      1140
     agccccttac tttctcatgg atgcttctcc gcgagattgc gttattgtct actgactata      1200
     tagagagtgt gtgtgctgtg ttttctcttt tgtgtcgtag aattgagtcg agtcatggac      1260
     aaatctgaat caaccagtgc tggtcgtaac cgtcgacgtc gtccgcgtcg tggttcccgc      1320
     tccgccccct cctccgcgga tgccaacttt agagtcttgt cgcagcagct ttcgcgactt      1380
     aacaagacgt tagcagctgg tcgtccaact attaaccacc caacctttgt agggagtgaa      1440
     cgttgtaaac ctggatacac gttcacatct attaccctaa agccaccaaa aatagaccgt      1500
     gggtcttatt atggtaaaag gttgttatta cctgattcag tcacggaata tgataagaaa      1560
     cttgtttcgc gcattcaaat tcgagttaat cctttgcgca aatttgattc taccgtgtgg      1620
     gtgacagtcc gtaaagttcc tgcctcctcg gacttatccg ttgccgccat ctctgctatg      1680
     tttgcggacg gagcctcacc ggtactggtt tatcagtatg ctgcatccgg agtccaagct      1740
     aacaacaaat tgttgtatga tctttcggcg atgcgcgctg atataggcga catgagaaag      1800
     tacgccgtcc tcgtgtattc aaaagacgat gcgctcgaga cggacgagct ggtacttcat      1860
     gttgacgtcg agcaccaacg cattcccacg tctggggtgc tcccagtctg attccgtgtt      1920
     tccagaaccc tccctccgat ttctgtggcg ggagctgagt tggcagttct gctataaact      1980
     gtctgaagtc actaaacgtt ttacggtgaa cgggttgtcc atccagctta cggctaaaat      2040
     ggtcagtcgt ggagaaatcc acgccagtag atttacaaat ctctgaggcg cctttgaaac      2100
     catctcctag gtttcttcgg aaggacttcg gtccgtgtac ttctagcaca ccgtgctagt      2160
     ttcagggtac aggtgccccc ccactctcgt gggggcctcc aaaggagacc a               2211
//