ID D28487; SV 1; linear; genomic RNA; STD; VRL; 2215 BP. XX AC D28487; XX DT 31-MAY-1996 (Rel. 47, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 6) XX DE Cucumber mosaic virus RNA3, complete sequence. XX KW 3a; coat protein; CP; movement protein. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2215 RA Chaumpluk P.; RT ; RL Submitted (04-FEB-1994) to the INSDC. RL Piyasak Chaumpluk, Iwate Biotechnology Research Center, Department of RL Genetic Engineering; 22-174-4 Narita, Kitakami, Iwate 024, Japan RL (Tel:0197-68-2911, Fax:0197-68-3881) XX RN [2] RA Chaumpluk P., Sasaki Y., Nakajima N., Nagano H., Nakamura I., Suzuki K., RA Mise K., Inouye N., Okuno T., Furusawa I.; RT "Six new subgroup I members of Japanese cucumber mosaic virus as determined RT by nucleotide sequence analysis on RNA3's cDNAs"; RL Nippon Shokubutsu Byori Gakkaiho 62:40-44(1996). XX DR MD5; e84eecd67f781394dd6b72dbd7dfc3be. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC112760; 10400773. DR EuropePMC; PMC3550734; 23637513. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2215 FT /organism="Cucumber mosaic virus" FT /segment="3" FT /strain="FT" FT /mol_type="genomic RNA" FT /clone="FT3/12-05" FT /note="isolated from field tomato Licopersicon esculentum FT in Kyoto" FT /db_xref="taxon:12305" FT 5'UTR 1..117 FT CDS 118..957 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:Q66139" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/Swiss-Prot:Q66139" FT /protein_id="BAA05846.1" FT /translation="MAFQGTSRTLTQQSSADTSDDLQKILFSPEAIKKMATECDLGRHH FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK FT SQLNNIESSQYLLTNVKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL" FT misc_feature 958..1256 FT /note="put. inter-cistronic region" FT misc_feature 1115..1127 FT /note="put. tRNA ICR2-like region" FT CDS 1257..1913 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q66140" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="UniProtKB/Swiss-Prot:Q66140" FT /protein_id="BAA05847.1" FT /translation="MDKSESTSAGRNRRRRLRRGSRSAPSSADANFRVLSQQLSRLNKT FT LSAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDTLETDELVLHVDVEHQRIPTSGVLPV" FT misc_feature 2085..2215 FT /note="tRNA-like structure" XX SQ Sequence 2215 BP; 514 A; 521 C; 532 G; 648 T; 0 other; gtaatctaca ctgtgtgtgt gcgtgtgtgt gtgtcgagtc gtgttgtccg cacatttgag 60 tcgtgttgtc cgcacatttt attttatctt tatacagtgt gttagatttc ccgaggcatg 120 gctttccaag gtaccagtag gactttaact caacagtcct cagcggacac gtctgacgat 180 cttcaaaaga tattatttag ccctgaagcc attaagaaaa tggctactga gtgtgaccta 240 ggccggcatc attggatgcg cgctgataat gctatttcag tccggcccct cgttcccgaa 300 gtaacccacg gtcgtattgc ttccttcttt aaatctggat atgatgttgg tgaattatgc 360 tcaaaaggat acatgagcgt ccctcaggtg ttgtgtgctg ttactcgaac ggtttccact 420 gatgctgaag ggtccttgag aatttactta gctgatctag gtgacaagga gttatctcct 480 atagatgggc aatgcgtttc gttacataac catgatcttc ccgctttggt gtccttccaa 540 ccgacgtatg actgtcctat ggaaacagtt gggaatcgca agcggtgttt tgctgtcgtt 600 atcgaaagac atggttacat tgggtatacc ggtaccacag ctagcgtgtg tagtaattgg 660 caagcaaggt tttcttctaa gaataacaac tacactcata tcgcagctgg gaagactcta 720 gtactgcctt tcaacagatt agctgagcaa acaaaaccgt cagctgtcgc tcgcctgttg 780 aagtcgcaac tgaacaacat tgaatcttcg caatatctgt taacgaatgt gaagattaat 840 cagaatgcgc gcagtgagtc cgaggaatta aatgttgaga gccctcccgc cgcaatcggg 900 agttcttccg cgtcccgctc cgaagccttc agaccgcagg tggttaacgg tctttagcac 960 tttggtgcgt attagtatat aagtatttgt gtgtctgtac ataatactat atctatagtg 1020 tcctgtgtga gttgatacag tagacatctg tgacgcgatg ccgtgttgag aagggaacac 1080 atctggtttt agtaagccta catcacagtt ttgaggttca attcctctta ctccctgttg 1140 agccccttac tttctcatgg atgcttctcc gcgagattgc gttattgtct actgactata 1200 tagagagagt gtgtgtgctg tgttttctct tttgtgtcgt agaattgagt cgagtcatgg 1260 acaaatctga atcaaccagt gctggtcgta accgtcgacg tcgcttgcgt cgtggttccc 1320 gctccgcccc ctcctccgcg gatgccaact ttagagtctt gtcgcagcag ctttcgcgac 1380 ttaacaagac gttgtcagcc ggtcgtccaa ctattaacca cccaaccttt gtagggagtg 1440 agcgttgtaa acctgggtac acgttcacat ctattaccct aaagccacca aaaatagacc 1500 gtgggtctta ttatggtaaa aggttgttat tacctgattc agtcacggaa tatgataaga 1560 aacttgtttc gcgcattcaa attcgagtta atcctttgcc gaaatttgat tctaccgtgt 1620 gggtgacagt ccgtaaagtt cctgcctcct cggacttatc cgttgccgcc atctctgcta 1680 tgtttgcgga cggagcctca ccggtactgg tttatcagta tgctgcatct ggagttcaag 1740 ctaacaacaa actgttgtat gatctttcgg cgatgcgcgc tgatataggc gacatgagaa 1800 agtacgccgt cctcgtgtac tcaaaagacg atacgctcga gacggacgag ctggtacttc 1860 atgttgacgt cgagcaccaa cgcattccca cgtctggggt gctcccagtc tgattccgtg 1920 ttttccagaa ccctccctcc gatttctgtg gcgggagctg agttggcaag ttctgctata 1980 aactgtctga agtcactaaa cgttttacgg tgaacgggtt gtccatccag cttacggcta 2040 aaatggtcag tcgtggagaa atccacgcca gcagacttac aagtctctga ggcgcctttg 2100 aaaccatctc ctaggtttct tcggaaggac ttcggtccgt gtacttctag cacaatgtgc 2160 tagtttcagg gtacgggtgc cccccacttt cgtgggggcc tccaaaagga gacca 2215 //