ID   D28486; SV 1; linear; genomic RNA; STD; VRL; 2218 BP.
XX
AC   D28486;
XX
DT   31-MAY-1996 (Rel. 47, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 6)
XX
DE   Cucumber mosaic virus RNA3, complete sequence.
XX
KW   3a; coat protein; CP; movement protein.
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2218
RA   Chaumpluk P.;
RT   ;
RL   Submitted (04-FEB-1994) to the INSDC.
RL   Piyasak Chaumpluk, Iwate Biotechnology Research Center, Department of
RL   Genetic Engineering; 22-174-4 Narita, Kitakami, Iwate 024, Japan
RL   (Tel:0197-68-2911, Fax:0197-68-3881)
XX
RN   [2]
RA   Chaumpluk P., Sasaki Y., Nakajima N., Nagano H., Nakamura I., Suzuki K.,
RA   Mise K., Inouye N., Okuno T., Furusawa I.;
RT   "Six new subgroup I members of Japanese cucumber mosaic virus as determined
RT   by nucleotide sequence analysis on RNA3's cDNAs";
RL   Nippon Shokubutsu Byori Gakkaiho 62:40-44(1996).
XX
DR   MD5; 24b59d08d7c4700db4654c083792efcf.
DR   EuropePMC; PMC112760; 10400773.
DR   EuropePMC; PMC3550734; 23637513.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2218
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="3"
FT                   /strain="N"
FT                   /mol_type="genomic RNA"
FT                   /clone="N3/17-23"
FT                   /note="isolated from statice Limonium sinuatum (necrotic
FT                   spot)"
FT                   /db_xref="taxon:12305"
FT   5'UTR           1..122
FT   CDS             123..962
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:Q66137"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q66137"
FT                   /protein_id="BAA05844.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYVLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   misc_feature    963..1260
FT                   /note="put. inter-cistronic region"
FT   misc_feature    1120..1132
FT                   /note="put. tRNA ICR2-like region"
FT   CDS             1261..1917
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q66138"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q66138"
FT                   /protein_id="BAA05845.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSSDANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVHQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
FT   misc_feature    2088..2218
FT                   /note="tRNA-like structure"
XX
SQ   Sequence 2218 BP; 517 A; 527 C; 529 G; 645 T; 0 other;
     gtaatcttac cactgtgtgt gtgtgcgtgt gtgtgtgtcg agtcgtgttg tccgcacatt        60
     tgagtcgtgc tgtccgcaca taatatttat ttcgttgtac agtgtgttag atttcccgag       120
     gcatggcttt ccaaggtacc agtaggactt taactcaaca gtcctcagcg gctacgtctg       180
     acgatcttca aaagatatta tttagccctg aagccattaa gaaaatggct actgagtgtg       240
     acctaggccg gcatcattgg atgcgcgctg ataatgctat ttcagtccgg cccctcgttc       300
     ccgaagtaac ccacggtcgt attgcttcct tctttaaatc tggatatgat gttggtgaat       360
     tgtgctcaaa aggatacatg agcgtccctc aagtgttatg tgctgttact cggacagtct       420
     ctactgatgc tgaagggtcc ttgagaattt acttagctga tctaggtgac aaggagttat       480
     ctcctataga tgggcaatgc gtctcgttac acaaccatga tcttcccgct ttggtgtctt       540
     tccaaccgac gtacgactgt cctatggaaa cagttgggaa tcgtaagcgg tgttttgctg       600
     tcgttatcga aagacatggt tacattgggt ataccggtac cacagctagc gtgtgtagta       660
     attggcaagc aaggttttct tctaagaata acaactacac tcatatcgca gctgggaaga       720
     ctctagtact gcctttcaac agattagctg agcaaacaaa accgtcagct gtcgctcgcc       780
     tgttgaagtc gcaattgaac aacattgaat cttcgcaata tgtgttaacg aacgcgaaga       840
     ttaatcaaaa tgcgcgcagt gagtccgagg aattaaatgt tgagagccct cccgccgcaa       900
     tcgggagttc ttccgcgtcc cgctccgaag ccttcagacc gcaggtggtt aacggtcttt       960
     agcactttgg tgcgtattag tatataagta tttgtgagtc tgcacataat actatatcta      1020
     tagtgtcctg tgtgagttga aacagtagac atctgtgacg cgatgccgtg ttgagaaggg      1080
     aacacatctg gttttagtaa gcctacatca tagttttgag gttcaattcc tcttactccc      1140
     tgttgagccc ccttactttc tcatggatgc ttctccgcga gattgcgtta ttgtctactg      1200
     actatataga gagtgtgtgt gctgtgtttt ctcttttgtg tcgtagaatt gagtcgagtc      1260
     atggacaaat ctgaatcaac cagtgctggt cgtaaccgtc gacgtcgtcc gcgtcgtggt      1320
     tcccgctccg cttcctcctc ctcggatgct aactttagag tcttgtcgca gcagctttcg      1380
     cgacttaaca agacgttagc agctggtcgt ccaactatta accacccaac ctttgtaggg      1440
     agtgaacgtt gtaaacctgg atacacgttc acatctatta ccctaaagcc accaaaaata      1500
     gaccgtgggt cttattatgg taaaaggttg ttattacctg attcagtcac ggaatatgat      1560
     aagaagcttg tttcgcgcat tcaaattcga gttaatcctt tgccgaaatt cgattctacc      1620
     gtgtgggtga cagtccgtaa agttcctgcc tcctcggact tatccgttgc cgccatctct      1680
     gctatgtttg cggacggagc ctcaccggta ctggttcatc agtatgctgc atccggagtc      1740
     caagctaaca acaaattgtt gtatgatctt tcggcgatgc gcgctgatat aggcgacatg      1800
     agaaagtacg ccgtcctcgt gtattcaaaa gacgatgcgc tcgagacgga cgagctggta      1860
     cttcatgttg acgtcgagca ccaacgcatt cccacgtctg gggtgctccc agtctgattc      1920
     cgtgttttcc agaaccctcc ctccgatttc tgtggcggga gctgagttgg cagttctgct      1980
     ataaactgtc tgaagtcact aaacgtttta cggtgaacgg gttgtccatc cagcttacgg      2040
     ctaaaatggt cagtcgtgga gaaatccacg ccagtagatt tacaaatctc tgaggcgcct      2100
     ttgaaaccat ctcctaggtt tcttcggaag gacttcggtc cgtgtacttc tagcacaccg      2160
     tgctagtttc agggtacagg tgccccccca ccctcgtggg ggctctccaa agagacca        2218
//