ID D26017; SV 1; linear; genomic RNA; STD; VRL; 6366 BP. XX AC D26017; XX DT 25-OCT-1994 (Rel. 41, Created) DT 31-MAY-2008 (Rel. 96, Last updated, Version 5) XX DE Bamboo mosaic virus genomic RNA, complete genome. XX KW . XX OS Bamboo mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6366 RA Hsu Y.-H.; RT ; RL Submitted (18-DEC-1993) to the INSDC. RL Contact:Yau-Heiu Hsu National Chung Hsing University, Agricultural RL Biotechnology Lab.; 250 Kuo-Kung Road, Taichung, Taiwan 402, RC XX RN [2] RP 1-6366 RA Lin N., Lin B., Lo N., Hu C., Chow T., Hsu Y.-H.; RT "Nucleotide sequence of the genomic RNA of bamboo mosaic potexvirus"; RL J. Gen. Virol. 75:2513-2518(1994). XX DR MD5; edfb3ce75bc83f1b396099d964c3fce5. DR RFAM; RF00290; BaMV_CRE. XX FH Key Location/Qualifiers FH FT source 1..6366 FT /organism="Bamboo mosaic virus" FT /isolate="BaMV-O" FT /mol_type="genomic RNA" FT /clone="BL13, BL2, BL10 and BL29" FT /db_xref="taxon:35286" FT misc_feature 1..6 FT /note="consensus sequence at the 5'end of potexvirus" FT CDS 95..4192 FT /note="ORF1=155k" FT /note="contains three conserved domains: methyltransferase FT domain at the N terminus, putative NTP-binding domain of FT RNA helicase and core domain of RNA-dependent RNA FT polymerase at the C terminus" FT /db_xref="GOA:Q65005" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q65005" FT /protein_id="BAA05033.1" FT /translation="MALVSKVFDSITDPSLRAVLQEEAHSQVKQVLKDTALYSRYALLP FT TAANTLERYAIPHNPFSTKLHTHAAAKALENDLYRTASYLLPKERVSFLFMKPSKMQYF FT RRRGDVDTFINADIVAKDLARYPLETIYPRLPEITTKMAFIGDSLHYFQPEVLEHIFTS FT SPQLETLLATIVLPPEATLRLKSLYPEIYTLHYMPQKFLYKPGGLSGGEYEHDYKDLTW FT LKIGHVTTASMCLTVDRVESKAANHLLLIRRGRLKLSTYRSYDTPEPLVVVPKIFLPPK FT YNAQKPITKTKANSWILYVKSAGEPKIRDVWAKLRQTIANSELNQYEPAELLLLTNYFY FT VLGKLDSITSFETLLGDNILKRLFRPAIAKIQELRHWVSGPTAFMQLYKALQLVDVDFT FT FEVTKNWETKQENHSEPELPKDAIDVLVQSLIGINYTDAATTEAANPKQQESGPKPYTN FT LPQPLQQTKCPEDTEVSASPECKAAETAQETHKAGPSSNPALNTDQEAAPSEPTDSEER FT KCPTLRELPWKAWLKLLRGLGFQGDLEQLDVEGDLIYPIKHIRHLPVEDFSGPITATLR FT KMNRMPCKYSPDIERAAAFARDVMSNKTGAILPKQSHEWKTTLKRKCKLAPRQTLISVI FT HGAGGSGKSRALQEYMRNNKEDPIVTILPTNELRADWKAKLPAHDPDMFMTFENALLIP FT KGNVVIMDDYTKLPRGYIEAYVQNSPMLDLLILTGDPRQSEHFESAEGNTINDLSPSPV FT VFSAYARYYINATHRNNQDLANALGVYSEKQGKTRISVSNHIEDGRHTLVPSQIKQRNY FT VSMGRKTSTYAGCQGITASRVQVIIDNDTAKCSHQVLYTAFSRAADEIHFCNTMTDEKQ FT FWAKVKCTPYLQAILNLTKEHSLPDPKPEPDEPLEPKAPVTHIAVENVVPLVEEITEPL FT PEKHDREIYSESTGHSNCIQTENEFIQAFQHQQAKDETLFWATIEKRIVTSTPESNWTE FT FKTKRPLGDILWLAYKEAMCLPAEPIKFDPDLWWKCADEVQNKYLQKPLHMIKNGILRQ FT SPDFGERHIALFLKSQWVKKNEKIGTVNVKAGQTIAAFYQSTVMIFGTMARYMRRVREK FT FCPKNILINCEIDQPTASKWVDTHWKFDRLAYTNDFEAYDQSQDGAMLQFEVMKARHHD FT LPADLIESYIELKLNAKIFLGTLGIMRLTGEGPTFDANTECNIAYTHARFHIPRGTAQL FT YAGDDCALNCEPEERESFKPLAAQFTLKSKPVTIRQGKGSWPEFCGNIITPYGYLKHPR FT KTWAALHKAKLQGKDELKKTATAYALDVLPTYELGDAIHDIFTDNELTFHYQTIRTLHT FT EAHTRVFANHDAIFGEEGLFSS" FT CDS 1356..1739 FT /note="ORF6=14k" FT /db_xref="UniProtKB/TrEMBL:Q65006" FT /protein_id="BAA05034.1" FT /translation="MPLTCSSSRSSASITQTQQLPKPQTLNNKKVDQNPTPTSRSPFSK FT PNAPRTRKCPHHQNAKRLKLRKRPTKQGPVQTPLSTLTKRQPRQNPQTARSGSAPHCVN FT CHGRRGSNYFGALDSKATLNSWT" FT CDS 4219..4980 FT /note="ORF2=28k" FT /note="contains a NTP-binding helicase motif at the N FT terminus" FT /db_xref="GOA:Q65007" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q65007" FT /protein_id="BAA05035.1" FT /translation="MDNRITDLLTRSGYLRTSEPRGAGQQLVVHAVAGAGKTTLLREIL FT NTIPGVTIHTAGTPDPPNLTLNYIKGQEPPCPKKYTILDEYPARAKWPEEAWDMLIADN FT LQHTGPTTRPHYIKHTTYRLGPQTVKTLQSLGYQLEFQHRADQQDQGFSFTGLFDGPIY FT GQPITLDTAAHNLALAHGLPALQATQTRGLEYDTTTIISSTPLPTVKDKVGLYIAFTRH FT RKACHIRAPGINPTCDVASSHGPASSSGQTT" FT CDS 4946..5305 FT /note="ORF3=13k" FT /note="related to the corresponding regions of other FT potexviruses, predicted to form transmembrane helices" FT /db_xref="GOA:Q65008" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q65008" FT /protein_id="BAA05036.1" FT /translation="MDQPLHLARPLDNTRAYLVLAIGVASALFLYTLTRNTLPHTGDNI FT HHLPHGGRYVDGTKGILYNSPTSSYPSSSLPFSMVIALATTLFLITRNILNPAPTTPRI FT YAPLCLHCHRNHPPC" FT CDS 5299..5457 FT /note="ORF4=6k" FT /note="related to the corresponding regions of other FT potexviruses, predicted to form transmembrane helices" FT /db_xref="GOA:Q65009" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q65009" FT /protein_id="BAA05037.1" FT /translation="MLNTDTLCIILFILILGILYNILQQHLPPPCEIIINGHTISIRGN FT CYHTTSS" FT CDS 5498..6226 FT /note="ORF5=25k" FT /note="encodes the coat protein" FT /db_xref="GOA:Q89760" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q89760" FT /protein_id="BAA05038.1" FT /translation="MSGTGTGTGRGTGTGVGGTGGTGGTGGGGTGRGQQAAPQPWETKF FT TKDDLAAIEPKPASANVPNTKQWISIQAGLIKAGATDANFMKVLLGLSLEAFDRGSSEA FT TTWDGITEGVEHRAAANAIKEANCPIHKVTYYLAKPTFAIRQSKNLPPANFAKKNVPSQ FT YKWCAFDAFDGLYDPTCLASELPYDAPSEIDRMASATFKTIQIKIANDQKGFNLNYNPN FT VTQARLPNAPLPALPEPTSD" FT misc_feature 6314..6319 FT /function="play a functional role inthe replication of CYMV FT RNA." FT /note="consensus sequence at the 3'end of potexvirus" FT regulatory 6333..6338 FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 6366 BP; 1925 A; 1884 C; 1339 G; 1218 T; 0 other; gaaaaccact ccaaacgaaa cgaaaagaaa agaaaagacg aaagaaaacg aaactgccaa 60 ttgtccccta caatgccctg cgcgtgcggc aacaatggca ctcgtttcta aagtctttga 120 cagcatcacc gacccatcct tgagggctgt actccaagag gaagcgcact cccaagttaa 180 acaagtgctc aaagacacag cgctctactc cagatacgcc ctcctcccca ctgctgcaaa 240 cacgcttgaa cggtacgcaa tccctcataa cccgttcagc acaaaattac acacacacgc 300 agcagcaaaa gcccttgaga atgacctcta ccggacggcc tcatatctcc tcccaaaaga 360 aagagtgtca tttcttttta tgaagccatc taagatgcaa tatttccgga gaagaggaga 420 tgtcgacacc ttcatcaatg ctgacatcgt tgctaaagac cttgccaggt accctctcga 480 gactatctac ccccgcctcc cggaaatcac aacaaagatg gcttttattg gggacagcct 540 gcattacttc cagcctgagg tgctggagca cattttcaca agctccccac aactagagac 600 cctgctcgcc acgatcgtcc ttccccccga agccacactc aggcttaaaa gtctataccc 660 agaaatctac acgttgcact acatgcccca aaaatttctc tacaaacctg ggggcctatc 720 aggcggggaa tacgaacatg attacaagga cctaacttgg ctgaagattg ggcatgtcac 780 aactgcttcc atgtgcctca cagtcgaccg ggtggagtct aaagcggcca atcacttact 840 actcatacgg cgtggaaggc tcaaactcag cacttacaga tcttacgaca cccctgagcc 900 cttagtcgtg gtaccaaaaa tattcctccc cccaaagtat aatgcacaga aaccaattac 960 taagacgaaa gcaaactcgt ggattctcta cgttaaatca gctggggagc cgaagattag 1020 ggatgtttgg gccaagctca ggcagacgat agcgaactct gaactcaacc aatacgagcc 1080 tgcggaattg ctgctactaa ccaactactt ctacgtgttg ggcaagttgg actccatcac 1140 gtccttcgaa actcttctcg gggacaatat actcaagcgc cttttcagac cggcgatagc 1200 aaaaatccaa gaactcagac actgggttag tggcccaaca gccttcatgc aactctacaa 1260 agcgctgcaa ctcgtcgatg tagacttcac ttttgaggtc actaagaact gggaaacaaa 1320 acaggagaac cacagcgaac ccgaactccc aaaagatgcc attgacgtgc tcgtccagtc 1380 gctcatcggc atcaattaca cagacgcagc aactaccgaa gccgcaaacc ctaaacaaca 1440 agaaagtgga ccaaaaccct acaccaacct cccgcagccc cttcagcaaa ccaaatgccc 1500 cgaggacacg gaagtgtccg catcaccaga atgcaaagcg gctgaaactg cgcaagagac 1560 ccacaaagca gggcccagtt caaaccccgc tctcaacact gaccaagagg cagccccgtc 1620 agaacccaca gacagcgagg agcggaagtg ccccacattg cgtgaactgc catggaaggc 1680 gtggctcaaa ctacttcggg gccttggatt ccaaggcgac cttgaacagt tggacgtaga 1740 gggggacctc atttacccaa ttaaacacat ccggcactta ccagttgagg atttcagtgg 1800 cccgatcaca gcgaccctga ggaaaatgaa ccggatgcca tgcaaatact cccccgacat 1860 tgaaagagca gccgcattcg cgcgagacgt gatgagcaat aaaacagggg ccatcctccc 1920 caaacaatcc cacgaatgga agaccacact taaaagaaaa tgcaaacttg cccctcgaca 1980 aactcttatt tccgtgatac atggcgcggg cggcagtggt aaatcaagag ccctgcaaga 2040 atacatgagg aacaacaagg aggaccccat cgtcaccatc cttccgacga atgagctaag 2100 ggccgattgg aaagctaaac tgcccgctca tgaccctgac atgttcatga cattcgagaa 2160 cgcgctgctg atcccaaaag gcaacgtagt catcatggac gattacacta agctaccacg 2220 cgggtacatc gaggcgtacg tgcaaaactc cccaatgcta gacctgctca tactcacagg 2280 agaccccagg caatccgaac acttcgaatc agccgaaggg aacacgatca acgatctcag 2340 cccctctcca gtcgtcttca gcgcgtacgc ccgctattac atcaacgcaa ctcacaggaa 2400 caaccaggac ctagcgaacg ccttgggggt ttactctgaa aaacaaggga aaacgcgaat 2460 atcagtcagt aaccatatag aagacgggcg ccacacatta gttcccagcc aaatcaaaca 2520 aagaaactac gtctccatgg gcaggaaaac ttctacctat gcgggctgtc aagggataac 2580 cgcttcacgt gtacaggtca tcattgacaa cgacactgca aagtgctcac atcaggtcct 2640 atacacagct ttttccaggg ccgcagacga aatacacttc tgcaacacta tgaccgacga 2700 aaaacaattt tgggcgaaag tgaagtgtac cccgtactta caagccatcc tcaaccttac 2760 aaaggaacac tctctgcctg acccgaagcc tgagccagat gaacccttgg agcccaaagc 2820 ccctgtcacc cacattgctg tggaaaacgt ggtaccgcta gtggaagaaa tcactgagcc 2880 tcttccagag aagcatgacc gagagatcta ctcagaaagc accggacact ccaactgcat 2940 ccaaaccgaa aacgagttca ttcaggcttt ccaacaccaa caggcaaagg atgaaactct 3000 cttctgggcc accattgaga aacgcatagt cacctcaacc cctgaatcaa actggactga 3060 attcaagaca aagaggcccc taggtgacat cttgtggctg gcctacaagg aggctatgtg 3120 cttgccagcg gagcccatca aattcgaccc agacctttgg tggaaatgtg ccgatgaggt 3180 gcaaaataaa tacctacaaa aaccccttca catgatcaaa aacggaatac tcagacaaag 3240 cccagacttt ggggagcgtc acatcgcgct atttctaaag tcgcagtggg taaagaaaaa 3300 cgaaaaaatt gggacagtca acgttaaggc tggtcaaact atcgccgcgt tctaccagag 3360 tactgtcatg atcttcggca cgatggcgcg ctacatgcgg cgtgtaagag aaaaattctg 3420 cccaaagaac atactaatta actgcgaaat tgaccagccc acagcttcaa aatgggtgga 3480 cacgcattgg aaattcgaca ggttggcata cacaaacgac tttgaggcgt atgaccagtc 3540 tcaagatggg gccatgttgc aatttgaggt gatgaaagca aggcaccatg atctgcctgc 3600 tgatttgatc gagtcctaca tcgaacttaa gctgaacgcc aaaatattcc taggcaccct 3660 tggcatcatg agactcactg gagaggggcc aaccttcgat gccaatactg aatgcaacat 3720 cgcctacacg catgcccgat tccacatacc cagaggcact gcacaactgt acgctggaga 3780 cgattgcgcc ctcaactgcg aacctgaaga gagagaatca tttaaacctt tagctgcgca 3840 gttcaccctc aaatcaaagc cggtgaccat aagacaagga aaaggctcct ggcccgagtt 3900 ctgtggcaat atcatcaccc cttacggcta cctcaaacat cctcggaaaa catgggctgc 3960 actgcacaag gccaaacttc aagggaaaga tgaattgaag aaaaccgcca cggcctatgc 4020 gctcgacgtg ctaccaacgt acgaactagg ggacgcaata cacgatatat ttaccgacaa 4080 cgagctgaca ttccactacc aaacaatcag aaccctacac acagaagccc acactcgagt 4140 cttcgccaac cacgatgcaa tctttggcga agaaggttta ttctctagtt aagtaaccta 4200 ttagtttaac aactaaccat ggataaccgg ataactgacc tactcacaag atctggctac 4260 ttaagaacat cagaaccaag aggcgccggg cagcaactgg tcgtgcacgc ggtggctggc 4320 gctggcaaga caacgctact ccgcgagata ctaaatacca ttccaggagt caccatacac 4380 actgcaggca cccccgaccc accaaacctc acactcaact acatcaaagg ccaagagccc 4440 ccttgcccga agaagtacac tatcctagat gagtacccag ctagagccaa gtggccggag 4500 gaggcctggg acatgttgat tgctgacaac ctccaacaca caggccccac gacccgcccc 4560 cactatataa aacacaccac ctacagactt ggtccccaaa cagtcaaaac gttgcaaagc 4620 cttgggtacc aactggaatt ccaacatcgg gcagaccagc aagaccaggg cttctcattc 4680 accggactat tcgacggccc aatttacgga caaccgatca cactcgacac agcagcccac 4740 aacctggcac tagctcacgg actaccagct ctacaagcaa ctcaaacgag agggctagaa 4800 tacgacacca ctaccatcat ctctagcact cctctgccaa cagttaagga caaggtgggc 4860 ctatacattg ctttcaccag gcaccgaaaa gcctgccata ttcgagcacc tgggatcaac 4920 cccacatgtg acgtggcctc ctctcatgga ccagcctctt catctggcca gaccacttga 4980 caacacgaga gcttacttag tattagctat aggagtagcg agtgcattgt tcctctatac 5040 actaacccgt aatacccttc cacacaccgg cgacaacatc caccatttac cgcacggggg 5100 taggtacgtg gacggcacca aaggaattct ctacaacagc cccacctcct catacccatc 5160 ctcatctctc ccattctcca tggttatcgc actagccaca acccttttcc tcatcaccag 5220 aaacattctc aacccagccc ccaccacacc tagaatctat gcgcccctct gcttgcattg 5280 tcaccggaat cacccaccat gctaaacact gacacactat gcatcattct gttcatacta 5340 atattaggca tcctatataa tatacttcaa cagcatctgc ccccaccatg tgaaataata 5400 ataaacgggc acactatatc cattaggggc aactgctacc acaccacctc cagctagggt 5460 ttgttaagtt tccctttttg taaattaaac actaaagatg tctggaactg gaacgggaac 5520 tgggcgaggg accgggacag gagtaggagg cactggaggc acaggtggca caggcggcgg 5580 aggaacaggt agagggcaac aagctgcacc ccagccctgg gaaacaaagt tcactaagga 5640 cgacctggcc gcaatcgagc caaaacctgc ttcggcaaat gttccaaaca ctaagcagtg 5700 gatcagcatt caagctggac tcatcaaggc tggagccacg gacgcaaact tcatgaaagt 5760 actgctcggc ctcagtctcg aagctttcga caggggctcg tcggaggcca ccacttggga 5820 tggaattact gagggcgtgg agcaccgtgc agcagccaac gccatcaagg aggcgaactg 5880 cccaatacac aaggtcacct actacctagc caaaccgacg ttcgccatta gacaatcgaa 5940 aaacctcccc ccagcgaact tcgcgaagaa gaatgtgcca tcacaatata aatggtgtgc 6000 gttcgatgct tttgatggcc tgtacgatcc cacctgcctt gcctcagaac taccctacga 6060 cgccccctca gaaatagacc gaatggcgtc cgctaccttc aaaactatac agatcaagat 6120 cgctaatgac cagaaagggt tcaacctcaa ctacaaccct aacgtcaccc aggctcgact 6180 ccccaacgcg cccctaccag ctcttcccga accaacatca gactaaacgt tgcatgatcg 6240 taaaacatgc ccggcttacc gtgagccgcc tttgaaagaa aggtttacac ggactctgtt 6300 gcgttacgca cgtacctaac ccgtgccagc agaataaaga ccttttggtt tctacagttt 6360 tttcca 6366 //