ID D16406; SV 1; linear; genomic RNA; STD; VRL; 3047 BP. XX AC D16406; XX DT 28-JUN-1993 (Rel. 36, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 5) XX DE Cucumber mosaic virus gene for viral replicase subunit, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3047 RA Karasawa A.; RT ; RL Submitted (07-JUN-1993) to the INSDC. RL Akira Karasawa, Faculty of Agriculture, Tohoku University, Laboratory of RL Plant Pathology; 1-1 Tsutsumidori, Amamiyamachi, Aoba-ku, Sendai, Miyagi RL 981, Japan (E-mail:karasawa@bios.tohoku.ac.jp, Tel:81-22-717-8658, RL Fax:81-22-717-8659) XX RN [2] RA Karasawa A., Ito A., Okada I., Hase S., Ehara Y.; RT "A possible role of RNA 2 of cucumber mosaic cucumovirus as a determinant RT of infection phenotype on cowpea"; RL Nippon Shokubutsu Byori Gakkaiho 63:289-297(1997). XX DR MD5; 6edc99ff18c82415d95d4411a868bd04. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC136033; 11884564. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3047 FT /organism="Cucumber mosaic virus" FT /strain="legume" FT /isolate="Iizuka" FT /mol_type="genomic RNA" FT /clone="SKL2-139" FT /db_xref="taxon:12305" FT 5'UTR 1..85 FT misc_feature 21..31 FT /function="promotion of viral RNA accumulation" FT /note="tRNA ICR2-like motif" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS 86..2659 FT /codon_start=1 FT /product="viral replicase subunit" FT /function="RNA dependent RNA replicase" FT /note="CMV-L 2a protein" FT /db_xref="GOA:Q83262" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q83262" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA03890.1" FT /translation="MAFPAPAFSLANLLNGSYGVDTPEDVERLRSEQREEAAAACRNYR FT PLPAVDVSESVSEDAHSLQTPDGAPAEAVSDEFVTYGAEDYLEKSDDELLVAFETMVKP FT MRIGQLWCPAFNKCSFISSIAMARALLLAPRTSHRTMKCFEDLVAAIYTKSDFYYSEEC FT EADDIQMDISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTIAIPPNLNRATDRVDIN FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP FT ATITYHKKSITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKSKYCLEID FT LSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSLLPPVGDPSKFTTLYNMEA FT KVMEPSVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYKELYYSDRRQC FT ELINSFCSTEFRVERVNSNKLRKKYGIERRCDDKRRTPTGSYGGGEEAETKVSQTKSTG FT TRSQKSQRESAFKSQTVPLPTVLSSGWSGTDRVVPPRERGGVTRA" FT 3'UTR 2660..3047 XX SQ Sequence 3047 BP; 777 A; 671 C; 708 G; 891 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaactc cctagacttt 60 aaaacttctt tctagtatct tttctatggc tttccccgcc cccgcattct cactagccaa 120 tcttttgaat ggtagttacg gtgtcgacac tcccgaggat gtggaacgct tgcgatctga 180 gcaacgcgaa gaggctgctg cggcctgccg taattacagg cccttacccg ctgtggatgt 240 cagcgagagt gtctcagagg acgcgcattc cctccaaact ccggacggag ctcccgctga 300 agcggtgtct gatgagtttg taacttatgg tgctgaagat taccttgaaa aatctgatga 360 tgagctcctt gtcgcttttg agacgatggt caaacccatg cgtatcggac aactatggtg 420 ccctgcgttt aataaatgtt cttttatttc cagcattgct atggccagag ctttgctgtt 480 ggcacctaga acatcccacc gaaccatgaa gtgttttgaa gacctggtcg cggctattta 540 cactaaatct gacttctatt acagtgaaga gtgtgaagcc gacgacattc agatggatat 600 ctcgtctcgc gatgtacccg gttattcttt cgaaccgtgg tcccgaacgt ctggattcga 660 accgccgccc atttgtgaag cgtgcgacat gatcatgtac cagtgcccgt gttttgattt 720 caatgcttta aagaaatcgt gcgctgagag gactttcgcc gatgattatg ttattgaagg 780 tttagatggt gttgttgata atgcgactct attgtcgaat ttgggtccat ttttggtacc 840 cgtgaaatgt caatatgaaa aatgtccaac gccaaccatc gcgattcctc cgaatttaaa 900 tcgtgctact gatcgtgttg atattaattt ggttcaatcc atttgtgact cgactctgcc 960 cactcatagt aactatgacg actcttttca tcaagtgttc gtcgaaagtg cagattactc 1020 tatagatctg gatcatgtta gacttcgaca gtctgatctt atagcaaaaa ttccagactc 1080 agggcatatg ataccggttc tgaacaccgg gagcggtcac aagagagtag gtacaacgaa 1140 ggaggtcctt acagcaatta agaaacgtaa tgctgacgtt ccagagctag gtgattccgt 1200 taatctgtct agattgagta aagctgtggc tgagagattt ttcatttcat acatcaatgg 1260 taactctcta gcatccagca actttgttaa tgtcgtcagt aatttccacg attacatgga 1320 gaagtggaaa tcctcaggtc tttcttatga tgatcttcca gatcttcatg ctgagaattt 1380 gcagttttat gatcacatga taaaatctga tgtgaaacct gtggtgagcg acacactcaa 1440 tatcgacaga ccggttccag ctactataac gtatcataag aagagtataa cctcccagtt 1500 ctcaccgtta ttcacagcgc tattcgagcg cttccagaga tgccttcgag aacgtattat 1560 tcttcctgtt ggtaagattt catctcttga gatggcagga tttgatgtca aaagcaaata 1620 ctgcctcgag attgatttgt ctaagtttga taagtctcaa ggtgaatttc acttattaat 1680 tcaggaacat attttgaatg gtctaggatg tccagctccg ataaccaagt ggtggtgtga 1740 tttccaccga ttctcttaca tcagagaccg tagagctggt gttggtatgc ctattagttt 1800 ccagagacga actggtgatg cattcaccta ttttggcaat accattgtca ccatggctga 1860 gtttgcctgg tgttatgaca ccgatcaatt cgaaaagctt ttattctcgg gcgatgattc 1920 tctaggattt tcactgcttc cccctgttgg tgatccgagt aaattcacga ctctttacaa 1980 catggaagct aaggtgatgg aaccatcagt accatatatt tgctcgaagt tcttactctc 2040 tgacgagttc ggtaacacat tttccgttcc agatccattg cgcgaggttc agcggttagg 2100 aacaaagaaa attccctatt ccgacaatga tgaattcttg tttgctcact tcatgagctt 2160 tgttgatcga ttgaagtttt tggaccgaat gtctcagtcg tgtatcgatc aactttcgat 2220 tttctttgaa ttgaaataca agaagtctgg ggaagaggct gctttaatgt taggcgcctt 2280 caaaaaatat accgctaatt tccagtccta caaagaactc tattattcag atcgtcgtca 2340 gtgcgaattg atcaattcgt tttgtagtac agagttcagg gttgagcgtg taaattccaa 2400 taaattgcga aagaaatatg gaattgaacg taggtgcgat gacaaacgtc gaactccaac 2460 tggctcgtat ggtggaggcg aagaagcaga gacgaaggtc tcacaaacaa aatcgacggg 2520 aacgaggtca caaaagtccc agcgagagag cgcgttcaaa tctcagactg ttccgcttcc 2580 taccgttcta tcaagtggat ggtccggaac tgacagggtc gtcccgccac gtgaacgagg 2640 cggagttacc cgagcctgag gcctctcgtt tagagttatt gggggaagac catgatttta 2700 acggtaaaga tggtttggcg ggtaagaatg ggcgggaagg tgctttctga acccccttcc 2760 gtatctccct ccggttttct gtggcgggag ctgagttggc agtattgcta taaactgtct 2820 gaggtcacta aacacattgt ggtgaacggg ttgtccatcc agcttacggc taaaatggtc 2880 agtcgtggag aaatctacgc cagcaaactt acaagtttct gaggcacctt tgaaaccatc 2940 tcctaggttt cttcggaagg acttcggtcc gtgtacctct agcacaacgt gctagtttca 3000 gggtacgggt gcgcccccac tttcgtgggg gcttccaaag gagacca 3047 //