Dbfetch
ID D16403; SV 1; linear; genomic RNA; STD; VRL; 3359 BP. XX AC D16403; XX DT 28-JUN-1993 (Rel. 36, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 5) XX DE Cucumber mosaic virus gene for viral replicase subunit, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3359 RA Karasawa A.; RT ; RL Submitted (07-JUN-1993) to the INSDC. RL Akira Karasawa, Faculty of Agriculture, Tohoku University, Laboratory of RL Plant Pathology; 1-1 Tsutsumidori, Amamiyamachi, Aoba-ku, Sendai, Miyagi RL 981, Japan (E-mail:karasawa@bios.tohoku.ac.jp, Tel:81-22-717-8658, RL Fax:81-22-717-8659) XX RN [2] RA Karasawa A., Ito A., Okada I., Hase S., Ehara Y.; RT "A possible role of RNA 2 of cucumber mosaic cucumovirus as a determinant RT of infection phenotype on cowpea"; RL Nippon Shokubutsu Byori Gakkaiho 63:289-297(1997). XX DR MD5; 79e2641ed3a8b9ce45d2f100f9b291e8. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC136033; 11884564. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3359 FT /organism="Cucumber mosaic virus" FT /strain="legume" FT /isolate="Iizuka" FT /mol_type="genomic RNA" FT /note="clones SKL1-55 and SKL1PCR-32" FT /db_xref="taxon:12305" FT 5'UTR 1..94 FT misc_feature 21..31 FT /function="promotion of viral RNA accumulation" FT /note="tRNA ICR2-like motif" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS 95..3076 FT /codon_start=1 FT /product="viral replicase subunit" FT /function="methyltransferase, helicase" FT /note="CMV-L 1a protein" FT /db_xref="GOA:Q83270" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q83270" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA03887.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGVLRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTQPAEDCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSETEDVTPLSGKLNSTVFSRVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILMSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHHIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKILAAQKAEKLAEKLAQPVIEVSDSPEASSQTPDDTAEVCGKEREVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGVVYSVGYNERGLGPKSDGELYIVNSECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVTRSVTSRAIVSVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT VARA" FT 3'UTR 3077..3359 FT /inference="non-experimental evidence, no additional FT details recorded" XX SQ Sequence 3359 BP; 853 A; 747 C; 814 G; 945 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaacta ccctttgaaa 60 acctctcttt cttaatcttt tctttgtaat tcctatggcg acgtcctcgt tcaacattaa 120 tgaactggta gcctcccacg gcgataaagg actactcgcg accgccctcg ttgataagac 180 agctcatgag cagctcgagg agcaattaca gcatcaacgt agaggccgta aggtctacat 240 ccggaacgta ttgggtgtaa aggattccga ggtcatccgg aatcggtatg gaggaaagta 300 cgacctccat cttacccagc aggagtttgc tccccacggc ctagctggtg tcctccgctt 360 gtgtgaaact ctcgattgtc tagactcttt cccttcatca ggtctgcggc aggacctcgt 420 cttagacttc ggaggaagtt gggtcacaca ttacctccgc ggacataacg tacactgttg 480 ttccccttgt ttgggtatcc gcgacaaaat gcgccatgcg gaacgtttaa tgaatatgcg 540 caagatcatc ttgaacgatc cacaacagtt cgatggtcga cagccggatt tctgcactca 600 accggctgaa gattgcaaag tacaagccca ctttgctata tctattcatg gaggttatga 660 tatgggcttc agaggattat gtgaagcgat gaacgctcac ggaaccacta ttttgaaggg 720 aacgatgatg ttcgatggtg cgatgatgtt tgacgaccaa ggtgtaattc ccgaacttaa 780 ctgtcagtgg aggaagatca ggagtgcttt ctccgaaact gaagacgtca caccgttgtc 840 tggtaagctc aattccacag tattctcccg cgtgcgaaaa ttcaagacta tggtagcttt 900 cgatttcatt aacgagtcta ccatgtccta tgttcatgac tgggagaata taaaatcttt 960 tcttacagac cagacttatt cataccgagg gatgacttac ggtattgaac gctgtgttat 1020 tcacgccggc atcatgacgt acaagattat cggtgtacct gggatgtgtc cacccgaact 1080 cattcgacat tgtatttggt tcccctccat taaagactat gttggtctga agattcccgc 1140 gtcgcaggac ttggttgagt ggaagacagt gcggatttta atgtcaacat tacgtgagac 1200 tgaagagatt gccatgaggt gttataatga taagaaagcg tggatggaac aatttaaggt 1260 tatcttaggt gtcctatctg cgaaatcatc taccattgtt atcaatggta tgtccatgca 1320 atctggcgag cgaatagata ttaatgacta tcatcacatc ggtttcgcca ttcttcttca 1380 cacaaaaatg aagtatgaac aacttggaaa aatgtatgat atgtggaatg cttcgagcat 1440 ctcgaagtgg ttcgcagcgt tgactcgtcc gctgcgtgtg tttttctcca gtgttgttca 1500 cgcgctgttc ccgactttga gaccccgcga ggaaaaagaa ttcctgatca agctctccac 1560 cttcgtgact tttaatgaag agtgctcatt cgacggtgga gaggaatggg acgtgatatc 1620 atctgctgca tacgttgcca cgcaggctgt tactgatggg aaaattttgg ctgcgcagaa 1680 agccgagaag cttgctgaga agcttgcaca acccgtgata gaggtatcag acagcccaga 1740 ggcgtcatct caaacgcctg atgatactgc tgaagtttgt ggaaaggagc gagaggtttc 1800 ggaactcgac tccttgtcag ctcagacacg ttcccccatc actagagttg ctgaaagggc 1860 tactgctatg ttagagtatg ccgcttatga gaaacaatta cacgacacca cggtgtctaa 1920 tttaaaacgt atttggaaca tggcgggtgg tgatgacaaa agaaactccc tcgagggtaa 1980 tttgaagttc gttttcgata cgtattttac cgttgatcct atggtgaaca ttcatttctc 2040 cacaggtcgg tggatgcgtc ctgtgcccga gggtgttgtc tattctgttg gttataatga 2100 acgcggttta ggtccgaagt ctgatggaga gttgtacatt gtcaatagtg aatgcgtgat 2160 ttgcaacagt gagtctttat ctactgtcac gcgttctctt caagctccaa ccggaaccat 2220 tagtcaagtt gacggagtcg ctggttgtgg gaaaaccacg gcaattaaat ccatttttga 2280 accgtctact gacatgatcg ttaccgcgaa caagaagtcc gcccaagatg tacgtatggc 2340 acttttcaaa tcgtcggatt ccaaagaagc ttgcactttc gttcgaacag ccgattctgt 2400 cctacttaat gaatgtccga ctgttagtag ggttttggtt gatgaggttg tgttattgca 2460 ctttggtcaa ttgtgtgccg tcatgtccaa gttgaaggcc gtgcgagcca tatgttttgg 2520 ggattcggag cagattgctt tttcctcgcg agatgcctca tttgacatgc gtttctctaa 2580 gatcattcct gatgaaacta gtgatgcgga cactacattc cgtagcccac aagatgtcgt 2640 gccgcttgtg cgtttaatgg ctacgaaggc ccttccgaaa ggaacccatt caaaatacac 2700 gaaatgggtt tctcaatcta aagtgacaag atctgttaca tctcgcgcca tcgttagtgt 2760 gacactggtt gatttggatt cctccaggtt ttatataacg atgacccaag ctgataaggc 2820 ttcactgatt tcaagggcga aagagatgaa tttaccaaag accttttgga acgaaaggat 2880 taaaaccgtg catgagtctc aaggtatctc tgaagaccac gttactttgg taagattaaa 2940 gagcacaaag tgtgacttgt ttaagcagtt ttcttattgt cttgtcgcat tgactagaca 3000 caaagtcaca ttccgctacg agtactgcgg tgtattaaac ggtgatttaa tcgccgaatg 3060 tgttgctcgt gcttagcggt gcccctcctt cgggcgggat ctgagttggc ggtaatctgc 3120 aaaccgtctg aagtcactaa acacatcgtg tggtgaacgg gttgtccatc cagctaacgg 3180 ctaaaatggt cagtcgtgga ggaatccacg ccagtagatt tacaaatctc tgaggcgcct 3240 ttgaaaccat ctcctaggtt tcttcggaag gacttcggtc cgtgtacttc tagcacaacg 3300 tgctagtttc agggtacggg tgcgccccca ctttcgtggg ggcttccaaa aggagacca 3359 //