ID D13913; SV 1; linear; genomic RNA; STD; VRL; 3308 BP. XX AC D13913; D00592; XX DT 17-DEC-1992 (Rel. 34, Created) DT 01-AUG-2007 (Rel. 92, Last updated, Version 9) XX DE Watermelon mosaic virus 2 (isolate USA) gene for polyprotein precursor, DE partial cds. XX KW . XX OS Watermelon mosaic virus 2 (isolate USA) OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-3308 RA Jerry S.L.; RT ; RL Submitted (15-DEC-1992) to the INSDC. RL Slightom L Jerry, The Upjohn Company; Molecular Biology Unit RL 7242,Kalamazoo,MI 49007, U.S.A. (Tel:1-616-385-5304, Fax:1-616-385-7373) XX RN [2] RP 1-3308 RX PUBMED; 2374006. RA Quemada H., Sieu L.C., Siemieniak D.R., Gonsalves D., Slightom J.L.; RT "Watermelon mosaic virus II and zucchini yellow mosaic virus: cloning of RT 3'-terminal regions, nucleotide sequences, and phylogenetic comparisons"; RL J. Gen. Virol. 71:1451-1460(1990). XX DR MD5; 1d33e4f670cf01f6a83f3ce99071c99e. XX CC The longest ORF contains a translation termination codon at CC position 803. They suggest the presence of this termination codon CC is most likely an artifact of the recombinant DNA process in . XX FH Key Location/Qualifiers FH FT source 1..3308 FT /organism="Watermelon mosaic virus 2 (isolate USA)" FT /isolate="USA" FT /mol_type="genomic RNA" FT /clone="pWMVII-3.2" FT /note="1016 bp upstream of BamHI site." FT /db_xref="taxon:148360" FT CDS <1..3055 FT /codon_start=2 FT /transl_except=(pos:803..805,aa:OTHER) FT /product="polyprotein precursor" FT /note="readthrough product" FT /db_xref="GOA:P18478" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:P18478" FT /protein_id="BAA03009.2" FT /translation="LSVTRKQCLELGMVLSLSPMGTYLEGTMGCLQLKHGHGGFVIHNT FT TQLRIHFIQGKDAILIRMPKIFLRLQSATSLDNQNVRNEFAWLEQTFKRRAYGQQSQSS FT SIILPEGKGSFWIHWITTQDGFCGLPLVSVNDGHVVGIHGLTSNDSEKNFFVPFTDGFE FT KEYLDNADNLSWDKHWFWEPSKIAWGPLNLVEEQPKEEFKISKLVSDLFGNTVAVQSRK FT ERWVLDAMEGNLVACGQADSALVTKHVVKGKCPYFAQYLSLHDGAXQFFEPLMGAYQPS FT RLNKDAFKKDFFKYNKPVVLNEVDFNAFEKAVEGVITMMVDFEFAECLFVTDPDEIYGS FT LNMKAAVGAQYKGKKQDYFSGMDSFDKERLLYLSCERLFNGEKGIWNGSLKAELRPIEK FT VQANKTRTFTAAPLDTLLGAKVCVDDFNNQFYSFNLKCPWTVGMTKFYGGWDKLMRSLP FT DGWTYCHADGSQFDSSLTPLLLNAVLSIRCCFMEDWWVGREMLENLYAEIVYTPILAPD FT GTIFKKFRGNNSGQPSTVVDNTLMVVIAMYYSCCKQGWSEEDIERRLVFFANGDDIILA FT VKDEDVWLYDTLSASFAELGLNYNFDERTKKREELWFMSHQAMLVDGIYIPKLEPERIV FT SILEWDRSKELMHRTEAICAAMIEAWGYTELLQEIRKFYLWLLSKDEFKELAASGKAPY FT IAETALRKLYTDVNTQPSELQRYLEVLDFNHIDGCCESVSLQSGKETVENLDAGKESKK FT DASDKGNKPQNSQVGQGSKEPTKTGTVSKDVNVGSKGKEVPRLQKITKKMNLPTVGGKI FT ILSLDHLLEYKPSQVDLFNTRATKTQFESWYSAVKVEYDLNDEQMGVIMNGFMVWCIDN FT GTSPDVNGVWVMMDGEEQVEYPLKPIVENAKPTLRQIMHHFSDAAEAYIEMRNSESPYM FT PRYGLLRNLRDRELARYAFDFYEVTSKTPNRAREAIAQMKAAALAGVNSRLFGLDGNIS FT TNSENTGRHTARDVNQNMHTLLGMGPPQ" FT mat_peptide <1..658 FT /product="49kda protease" FT mat_peptide 659..2209 FT /product="nuclear inclusion protein" FT misc_feature 803..805 FT /note="termination codon in ORF" FT mat_peptide 2210..3052 FT /product="coat protein" FT polyA_site 3308 XX SQ Sequence 3308 BP; 1019 A; 550 C; 813 G; 926 T; 0 other; tctgtcggtc acaaggaaac aatgtttgga gttgggtatg gttctttcat tatcaccaat 60 gggcacttat ttagaaggaa caatgggatg cttacagtta aaacatggcc atggcggatt 120 tgtcatacat aacaccacgc agttaagaat ccattttatt caaggtaaag atgcaatctt 180 gattcgtatg ccgaagattt tcctccgttt gcaaagcgca acttctttag acaaccaaaa 240 cgtgaggaac gagtttgcat ggttggaaca aactttcaag agaagagctt acgggcaaca 300 gtctcagagt tcttccatta ttctacctga aggaaaggga tctttctgga tacattggat 360 aacgactcag gatggttttt gtgggttacc tcttgtgtct gtcaatgacg gacatgttgt 420 tggtatacat ggattaacat ctaatgattc agagaagaat ttctttgttc catttaccga 480 tgggttcgag aaggagtatt tggacaacgc tgataatcta tcgtgggaca aacattggtt 540 ttgggaaccg agtaagattg cgtggggccc tttgaactta gtagaggagc agccaaagga 600 agagtttaag atatcaaaac ttgtatctga tctctttggt aacacagtag cagtgcagag 660 cagaaaggaa agatgggttc tggatgccat ggaagggaat ttagtggctt gtgggcaagc 720 tgatagcgca ctagtgacaa agcatgtggt taaaggaaag tgcccttatt ttgcgcaata 780 tctctcactg catgatggag cgtgacagtt ctttgagcca ttgatggggg cataccagcc 840 aagccggttg aataaagacg ctttcaagaa agatttcttt aaatacaaca aaccggttgt 900 tctgaatgaa gttgacttta atgcattcga gaaagcagtt gagggagtga taacaatgat 960 ggttgacttt gaattcgcag aatgcttatt tgtgactgat cctgacgaaa tttatggatc 1020 cctgaacatg aaagctgctg ttggtgctca atataaagga aagaaacagg actacttttc 1080 tggcatggat agttttgata aagagcgctt gttgtacctt agctgtgaga gactttttaa 1140 tggagagaag ggaatttgga atggttcctt aaaggcggag ttgagaccaa ttgagaaagt 1200 gcaagcaaac aaaacaagaa cattcacagc agcaccgctt gacacattac ttggagctaa 1260 agtttgcgtt gatgatttca ataatcaatt ttatagcttc aatttaaaat gtccgtggac 1320 agttggcatg actaagtttt atgggggttg ggataagcta atgagaagtt tgcctgatgg 1380 ctggacatat tgccacgcag atgggtcaca gttcgacagt tctctaactc cattgttgtt 1440 gaatgctgtc ctcagtatca gatgttgctt catggaagat tggtgggtcg gaagggaaat 1500 gcttgaaaac ctttacgctg agatagttta cacaccaatc ttagcacctg atggtacaat 1560 ttttaaaaag ttcagaggga acaacagtgg gcagccatct acagttgttg acaatacact 1620 tatggttgtc attgctatgt attattcgtg ctgtaaacaa ggctggtcag aggaggacat 1680 tgaaaggagg ctggtgttct ttgccaatgg tgatgatatt atcctggcag ttaaggatga 1740 agatgtgtgg ctgtatgaca ctctaagtgc ttcattcgct gagctgggcc taaattacaa 1800 ttttgatgag cgaacaaaga aaagagagga actgtggttc atgtcacacc aggccatgct 1860 agttgatgga atatacattc caaagcttga acctgaaagg atagtttcca tcttagagtg 1920 ggataggagc aaggaactta tgcaccgcac tgaggcaatt tgtgcagcta tgatagaagc 1980 atggggatat actgagcttt tgcaggaaat tcgcaaattc tatttgtggc ttctgagcaa 2040 agatgaattt aaggaacttg ctgcatccgg aaaagctcca tacatagctg agacagcatt 2100 gagaaaactc tacacagatg tcaacacaca accaagtgaa ttgcaaagat accttgaagt 2160 tttggatttt aaccatatcg atggttgctg tgaatcagtg tctttacaat caggaaaaga 2220 aacagttgaa aatttggacg cagggaaaga atcaaagaaa gatgccagtg acaaagggaa 2280 taagccgcag aactcgcaag ttggtcaggg tagcaaggaa ccaacaaaaa ccggcacagt 2340 cagcaaggat gtaaatgttg gatcgaaagg aaaagaagtc ccacgactac aaaagataac 2400 aaagaaaatg aatcttccaa cagttggtgg gaaaatcatt cttagcttag accatttgct 2460 tgagtacaaa cctagtcaag ttgatttgtt taacactcga gcaacaaaaa cacaatttga 2520 atcatggtac agcgcagtca aagttgagta tgatcttaat gatgagcaaa tgggtgtgat 2580 tatgaatggt tttatggttt ggtgtatcga taacggtaca tctccagatg tcaatggagt 2640 gtgggtaatg atggatgggg aagagcaagt tgagtaccca ctaaagccaa ttgttgaaaa 2700 tgcaaagcca actttgagac aaatcatgca ccatttctca gatgcagcgg aagcatatat 2760 tgaaatgaga aactctgaaa gtccgtatat gcctagatac ggattactga gaaatttgag 2820 agacagggaa ttagcacgct atgcttttga cttctatgag gttacttcta aaacgccaaa 2880 tagggcaaga gaagcaatag ctcaaatgaa ggccgcggct ctcgcgggag ttaacagcag 2940 gttatttgga cttgatggta atatctcgac caattccgaa aatactggga ggcacactgc 3000 aagggacgta aatcagaata tgcatacttt gttgggtatg ggtccaccgc agtaaagact 3060 aggtaaactg gtcacagtta gcatttcggg tcgttataag ttttctataa tataacatgt 3120 cgcactttat tttagtatag tgtgatttca tcacctttgt actgtttatg ttagcgtggt 3180 ttaaccacct ttgtgtgtgc tttatattat agtttatgcg tagcagggag aaccattaca 3240 atgccggagt tgtttgtagt gtgatttcat cacggttaat agccgaggta cggtaatgtt 3300 tgttgcct 3308 //