ID D13747; SV 1; linear; genomic RNA; STD; VRL; 6955 BP. XX AC D13747; D00405; XX DT 27-NOV-1992 (Rel. 34, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 6) XX DE Narcissus mosaic virus genomic RNA, complete genome. XX KW . XX OS Narcissus mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6955 RA Linthorst H.J.; RT ; RL Submitted (13-APR-1989) to the INSDC. RL Huub J. Linthorst, State University of Leiden, Department of Biochemistry; RL Wassenaarseweg 64, Leiden 2333 AL, Netherlands (Tel:31-71-272727, RL Fax:31-71-274537) XX RN [2] RX PUBMED; 2732689. RA Zuidema D., Linthorst H.J., Huisman M.J., Asjes C.J., Bol J.F.; RT "Nucleotide sequence of narcissus mosaic virus RNA"; RL J. Gen. Virol. 70:267-276(1989). XX DR MD5; 7999f7fd8ebb9896f7f7aa80c072d52d. DR EuropePMC; PMC3170305; 21854646. XX CC The nucleotide sequence of the five 5'-terminal residues was not CC unambiguously determined. By analogy to potato virus X, white CC clover mosaic virus and papaya mosaic virus, this 5'-terminal CC sequence is probably GAAAA. XX FH Key Location/Qualifiers FH FT source 1..6955 FT /organism="Narcissus mosaic virus" FT /mol_type="genomic RNA" FT /note="NMV genome excluding the 3' poly-A tail" FT /db_xref="taxon:12180" FT CDS 81..5012 FT /codon_start=1 FT /product="186K protein" FT /db_xref="GOA:P15095" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P15095" FT /protein_id="BAA02891.1" FT /translation="MAKVRAALERIRDPSVQTALSEAAYTHVRPVLKESLVNCPYALSN FT DEADCLESFGITVNPYANQTHTHAACKVIENRMLEIVGMHLPKHSCTMLFLKRSKLRYM FT RRAAILKDVFLNKDVEPKDLFRYDRDTIRSRLQDIDTKIAYMSDTLHFMSRREIVQLFE FT DSPKLETLLATVVLPVEALHKRTSLYPSLYSINYSAKGFEYIPGNHGGGSYFHPYTTLE FT WLKVRMINAEDFHKLSTGFILTFQLVESLGANHLFIVQKAKLLTPQMRTFCRDSLVTLP FT QVFCPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPDEIV FT HLANYFFFVSSLDSITCYEDLLSSDIWMRLTRPLRTAVRKFVELFKGKQDFDKLLIALK FT WQPFSYSLEPVDFTAYFVSRRVRTLAKMEDISWHQAAELARRLESEPDLLSWEDLCSKP FT IADPLASVSTPPLATLTSPAISESRVTDTSSPKLTNISVESILHPTSSNHATIAESLNP FT KFCGWTRGDFHHMIVNQPSDRLKGCRSWSYTTSPDVDLMLENLLLTPIPWESRLSDILL FT TLNTPANACCIQILDCSAASAWVDWSVQPIKTFPVAFVGMGETTLTFEDDSTLPLKEGE FT FVFFPPEWLARHKYQIKTASNLHLCATFLVLDTTLLGETLANNCIEPEPLRPTASRKSC FT QPTPSVDKSGADSPPEKQIVTPIVDAAVLSCRPKLQDVTKPTKVLMAAETSDSVADSLP FT WASWVNLLQKHGFKGNQQQIAQDGQLIIPISDIRKLPHIPFPEEVPETLRETLKNIKRF FT PVEITMQHKRAGSYDSDIKNNRTGKLLSQMDNKWKAAFAYKLQQEDRKVCGTIIHGCGG FT SGKSFAIQEWMRSLKEDQSVVTVVTPTVLLRNDWQTKLPILPADVFKTFEKSVIQPCNP FT ILVFDDYTKLPPGLIESVVMHHQNVVFIILTGDNRQSVYHETNPEAYIAALPEAVEIFS FT PYCEFYLNATHRNVKDLANKLGVYSEREGKLKVNFASHHLKASRIPMLVPSTMKRNAMF FT DMGHHSMTYAGCQGLTAPKIQILLDNHTQFCSERVLYTCLSRAVDRIHFINTGPTTGDY FT WAKLESTPYLKAFIDTYRDEKTEVYNSQPASAEPTEPEAPATHFPTAPKPLLEPLVEKL FT TDKEAREIFSPAFGHSNAIQTEDSVVQLFQHQQAKDETLYWATIDTRLAISTPEANLRE FT FNMKRDIGDILFMNYAKLMCLPPEPVPFEERLWKISADEVRNTYISKPIGNLVNAASRQ FT SPDFPKNKIALFLKSQWVKKTEKLGTLKVKPGQTIASFMQETVMLYGTMARYLRKMRRR FT FQPDNIFINCETTPEDLDKFIKSQWDFSRPAHTNDFTAFDQSQDGAMLQFEVIKAKFFN FT IPAEIIEGYIYIKLNAAIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFHITDDTAQV FT YAGDDMALDRVSIEKDSFNRLEKQLKLTSKPMFPKQVKGDYAEFCGWVMTPAGIIKHSL FT KMHASIQLQKKINNIKESARSYALDLRYAYKLGDELQEHLNEVEADYHQQSVRDMHLLH FT QQDVLNKGSASPPHVFEKTADANTAGSSKTHKRNALKKKKQTRIAEILPSPDATGLSSL FT PFRFF" FT regulatory 4977..4994 FT /note="subgenomic promoter consensus sequence" FT /regulatory_class="promoter" FT CDS 5014..5715 FT /codon_start=1 FT /product="26K protein" FT /db_xref="GOA:P15096" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P15096" FT /protein_id="BAA02892.1" FT /translation="MDCKYLLELLDSYSFIRSSRSFSSPIIIHGVAGCGKSTIIQKIAL FT AFPELLIGSFTPALLDSNSGRKQLAVTSDPLDILDEYLGGPNPVVRLAKFCDPLQYSCE FT QPEVPHFTSLLTWRFCVRTTALLNGIFGCQIKSRREDLCHLTHENPYTTDPKGVVVAHE FT QEVINLLLQHGCPVTPTQHLWGLTIPVVSVYITSIASLSTVDRANLFLSLTRDSKALHI FT FEFDAWSHATC" FT CDS 5690..6082 FT /codon_start=1 FT /product="14K protein" FT /db_xref="GOA:P15097" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/Swiss-Prot:P15097" FT /protein_id="BAA02893.1" FT /translation="MPGLTPPVNYEQVYKVLAIGFLLCASIYCLRSNHLPHVGDNIHSL FT PHGGNYADGTKRVQYFRPHSSTSTNHKYTALCAVLTLSLLIFAQTRLAAGNRITSVSIC FT HHCSSQGSLSGGNHGRVSGHSELPTT" FT CDS 5841..6143 FT /codon_start=1 FT /product="11K protein" FT /db_xref="GOA:P15098" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/Swiss-Prot:P15098" FT /protein_id="BAA02894.1" FT /translation="MQTAPREYSTSGPTAVLAPTTNTQHYAPYSLYRFLSSHKLDLLLG FT IALLVFLYVITAAPKEVCQVVITGESVVIRNCQQPDRILANLNLSPWNGVKFPLL" FT regulatory 6118..6135 FT /note="subgenomic promoter consensus sequence" FT /regulatory_class="promoter" FT CDS 6193..6915 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:P15100" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/Swiss-Prot:P15100" FT /protein_id="BAA02895.1" FT /translation="MATPSTQTTDPKPANADLSDPNRAPSLEDLKKIKYESTTTAVATP FT AEIQLLGDLFKKLGLDANSVAPAMWDLARAYADVQASRSAVLSGTTPSNPAITRQALAR FT QFYVINITPRQFCMYFAKVVWNLLLDSNVPPAGWAKQGLPDDCKFAGFDFFEGVLSPAA FT LDPADGLIRPPSQREIQAHSTAKYGALARQRYRMETSFPPWLKSLTVGSAVSTPCTPLK FT HLQNCNRNTSKLKLVCGL" FT CDS 6296..6580 FT /codon_start=1 FT /product="10K protein" FT /db_xref="UniProtKB/Swiss-Prot:P15099" FT /protein_id="BAA02896.1" FT /translation="MNQPQLPSPPQLRFSCSVIFSRNLVLTLTQSHPLCGTSLEPTPMC FT KRVVQQCYLEPHHQTLRSPGKLSLDSFTSLTSLHASSACTSPRWSGTCY" XX SQ Sequence 6955 BP; 1939 A; 1860 C; 1436 G; 1720 T; 0 other; gaaaacaaac caacacaaac acacgtatcc tcaaacggac catataaggt gaataatagc 60 aatacgcact atacacccat atggctaaag tacgtgccgc gttggagaga attagggacc 120 catcggtgca aaccgcttta tctgaagcag cttacacaca tgtccgcccc gttctcaaag 180 aatccctagt caactgcccc tatgcccttt ctaacgacga agctgattgc ttagaaagtt 240 ttggcattac tgtaaatcca tatgctaacc aaactcacac tcacgcagca tgtaaagtta 300 tagagaatag aatgttagaa atagttggca tgcacttacc taaacactca tgcaccatgc 360 ttttcctgaa aagaagcaaa ttgcgataca tgcggagggc agctatactt aaagacgtct 420 ttctcaataa agacgttgaa cctaaagacc tgtttcgcta cgatcgtgat acaataagaa 480 gtagactgca ggatatagac accaaaattg catatatgtc tgacactctg catttcatgt 540 ctcgcaggga aatagtgcag ttatttgagg attcaccgaa acttgagaca ctactcgcca 600 ctgttgtgct accagtcgaa gcccttcaca agagaacatc gctctacccg agcttgtact 660 cgatcaacta ctcagctaag ggcttcgaat acataccagg caaccatggc gggggttctt 720 atttccatcc ctacacaacc ctcgaatggc tcaaggtgcg tatgatcaac gctgaagact 780 tccataaact ctcaaccggg tttattttaa ccttccaact tgtggaaagc ttaggtgcta 840 atcacctttt catagtgcag aaagccaaac tcctaacgcc acagatgcgc actttctgtc 900 gtgacagctt ggtcacactc ccacaagttt tttgtccggc agctatgaac gctaatagac 960 ctctctccaa aactaaagct atgcaaatgc tattatattg caaatcggtc aagcaagtta 1020 ccgagagaga tatctacgca aaaattaggc aaatcattcc cacaagcgag ctcgagctgt 1080 acgatcccga tgaaattgtg catttggcta attatttttt ctttgtttct agcttagatt 1140 caataacttg ctacgaagat cttctctcat cagacatctg gatgagactc actaggccac 1200 tcaggacagc ggttcggaag ttcgtcgaac tctttaaagg caaacaagac tttgataagt 1260 tattgatcgc tcttaaatgg caacccttct cctactcatt agagccagtt gacttcacgg 1320 catacttcgt aagccgtcga gtacgcacac tggctaagat ggaggacata tcatggcatc 1380 aagctgctga actggcccgt cgtctcgaaa gtgaacccga cctcctctct tgggaagatc 1440 tttgttccaa gcccattgct gatcccctcg ctagcgtctc caccccacct ctcgctacgc 1500 tcacctcgcc tgccatctcg gaaagcaggg ttactgacac ctcttccccc aaactaacta 1560 acatttcagt cgaatccatc ctccacccaa ccagctctaa ccacgccacc atagctgaat 1620 ccctaaatcc aaaattctgt ggatggacta gaggggactt tcatcacatg atcgttaacc 1680 aacccagtga cagactcaaa ggttgccgat catggtctta caccacttca cctgacgtgg 1740 acttgatgtt ggaaaatctt cttctaactc ccatcccctg ggaatcaaga ttgtccgaca 1800 ttttactcac acttaacacc cctgctaacg cttgctgcat ccaaatttta gactgctcag 1860 cagcgagtgc ctgggtcgat tggtcagtcc aaccaatcaa gactttccct gttgcttttg 1920 tggggatggg tgaaaccaca ttaactttcg aagacgactc gaccctacca ctgaaagagg 1980 gcgagttcgt gtttttccca cccgagtggt tggcccggca taaatatcag atcaaaactg 2040 cgtcgaatct ccacctgtgc gcaacttttc ttgtgttaga cacaactcta cttggtgaaa 2100 cccttgccaa caattgtatt gaaccagaac cactcaggcc taccgcctcc cgcaaatcat 2160 gtcaacccac tccatcggta gacaagagcg gagctgactc accacctgag aaacaaatcg 2220 tcacacccat cgttgacgcg gccgtgttaa gttgtcgacc caagctgcaa gatgtgacca 2280 aacccaccaa agttctaatg gccgctgaaa cctctgattc agtggctgac tcgctaccgt 2340 gggcaagctg ggtgaacttg ctacagaaac acggtttcaa agggaatcaa caacagattg 2400 cacaggatgg acaacttatc attcctatca gtgacatccg caagctacca catatcccct 2460 tcccagagga agtaccggaa acactgcgag agactctcaa aaacatcaaa cgtttcccag 2520 tcgaaataac aatgcaacat aaaagggctg gctcctacga ctctgatatc aagaacaatc 2580 ggactggcaa gttgctgtct cagatggaca acaaatggaa ggccgctttt gcgtataagc 2640 tgcaacagga ggacaggaaa gtttgcggta caatcattca cggctgcgga ggctccggca 2700 aatcctttgc cattcaagag tggatgcgat ctttgaagga agaccagtca gtggtcacag 2760 tcgtcacacc aacggttttg ctgagaaacg actggcaaac gaagttaccc atcctgccgg 2820 cagatgtttt caaaactttc gagaaatcgg tgatccaacc ctgcaatcca attttagtgt 2880 ttgatgacta cacaaaattg ccacctggat tgatagagag tgtagtcatg catcaccaga 2940 acgttgtttt catcattctc actggagaca accgacagtc cgtttaccac gagaccaacc 3000 cggaagcgta catcgcagcg ttacctgaag cggtagagat tttcagcccc tactgtgagt 3060 tctacctcaa tgccacccac cgaaacgtta aagacctagc caacaagctg ggtgtttact 3120 ctgaaaggga gggcaagttg aaagtaaact tcgcttcaca tcacctcaaa gcttctcgaa 3180 tcccaatgtt ggtgccttca actatgaaac gcaatgcgat gttcgatatg ggccaccaca 3240 gcatgacgta tgccggctgc caaggtctta ccgccccaaa aatccaaatc ttgctcgaca 3300 accacactca attttgttca gagcgggttc tctatacttg cttgtctcgt gccgtcgaca 3360 gaattcattt catcaacaca ggacccacga caggagacta ttgggcgaaa ttggaaagca 3420 ctccctatct caaggctttc atagacactt acagggacga gaaaacagaa gtctacaatt 3480 cccagcccgc gagtgccgaa ccaaccgagc ctgaagcacc cgccacgcat tttcccacgg 3540 caccgaaacc ccttcttgag ccgctagtgg agaaattgac cgataaagag gcgagagaaa 3600 tcttttcacc tgctttcggc cactcaaacg ccattcaaac agaagattct gttgttcagc 3660 tgttccaaca ccagcaagcg aaagacgaaa ctctttattg ggccaccatc gacacaagat 3720 tggctatctc cacgcctgaa gcaaatttaa gggagttcaa catgaaacgt gacattggcg 3780 acattctgtt catgaattac gccaaactga tgtgcttgcc cccagagcca gttcccttcg 3840 aagagaggct atggaaaatc tcagctgatg aggtccgcaa tacttatatt agcaaaccca 3900 tcggcaatct ggtgaatgct gcttctcgtc aaagcccaga ctttccgaag aacaagatcg 3960 ctctgtttct gaagtcacaa tgggtgaaga agacagaaaa actgggaacc ttgaaagtca 4020 agccaggaca gaccatcgct tctttcatgc aagaaactgt catgctctat ggcaccatgg 4080 cgcgctactt acgtaagatg cggagaagat tccagcctga caacattttc atcaactgcg 4140 aaactacccc agaagacctg gataagttta ttaagagtca gtgggatttc tccagaccag 4200 cgcacaccaa tgacttcact gctttcgatc agtcacaaga tggcgccatg ctgcagtttg 4260 aagtgattaa ggcaaaattt ttcaacatac ctgctgagat catcgagggc tacatctaca 4320 tcaaactcaa cgcagccatt ttcttgggca ccttgggcat catgcggctc agtggagaag 4380 gaccaacatt tgacgccaat actgaatgtt caatcgccta caacgccacc aggtttcata 4440 tcactgatga cacagctcaa gtctacgcag gcgatgacat ggcgttggac cgggtgagca 4500 ttgaaaaaga cagcttcaat agattagaga aacagctgaa gctcacatcg aaaccgatgt 4560 ttcctaaaca agtcaaaggg gattacgcag aattttgtgg ttgggtcatg actcccgctg 4620 gcatcatcaa acattctttg aaaatgcatg cttccatcca actacagaag aagatcaaca 4680 acatcaaaga gagtgctaga tcctacgcac ttgatctgcg ttacgcgtac aaactgggag 4740 acgagctgca agaacattta aatgaggtag aagcggacta ccaccagcaa tctgttcgcg 4800 acatgcactt gcttcatcag caagatgtgt tgaacaaagg tagtgccagt ccgccacatg 4860 ttttcgagaa aacggccgac gccaacactg cgggaagctc gaagactcac aagcgaaacg 4920 cgctgaagaa gaagaagcag actcgaattg cagaaattct tccgagtcct gacgctaccg 4980 ggttaagttc attgcctttt cgtttttttt gaaatggact gtaagtattt attagagtta 5040 ttagattcgt atagtttcat acgttcttct aggtcgtttt cgtcacccat cattatccac 5100 ggtgttgctg gctgcggtaa atctacaatc atccagaaga ttgctcttgc tttccctgaa 5160 cttttaatcg gcagcttcac accagctttg cttgactcca attccggccg gaaacaattg 5220 gcagttacct ccgacccgct agacatcttg gacgaatact tgggcggccc taacccagtc 5280 gttaggcttg caaaattttg cgatcctttg caatattctt gtgagcagcc tgaggttcca 5340 catttcactt ccttactcac ttggaggttt tgtgttcgta ccactgctct tttaaacgga 5400 attttcggct gccaaatcaa gtctcgtcgt gaggatctgt gtcatctcac ccacgagaat 5460 ccttacacca ccgatcctaa aggagtagtc gtggcccacg aacaagaagt catcaacttg 5520 ctgctgcaac acggttgccc cgtgactccc actcaacacc tttggggcct gaccattcca 5580 gttgtgagcg tctacatcac ctccatcgcc tccttgtcca ctgttgaccg tgccaatctc 5640 tttctgagtc tcactagaga ctcaaaagcg ctccacattt tcgaattcga tgcctggtct 5700 cacgccacct gttaactacg agcaggtgta taaagttttg gctatcggat tcctgctctg 5760 cgcttctatc tattgtctga ggtctaatca cttgccacac gtgggagata acattcattc 5820 ccttccccac ggaggcaatt atgcagacgg caccaagaga gtacagtact tccggcccca 5880 cagcagtact agcaccaacc acaaatacac agcattatgc gccgtactca ctttatcgct 5940 tcttatcttc gcacaaactc gacttgctgc tgggaatcgc attactagtg tttctatatg 6000 tcatcactgc agctcccaag gaagtttgtc aggtggtaat cacgggagag tcagtggtca 6060 ttcggaactg ccaacaacct gatcgcattt tggccaatct caatctatca ccgtggaacg 6120 gggttaagtt tcctttatta tagtttaaaa tttttagact ttgtgtgtat tatatagaat 6180 aaatactctt caatggctac tcccagcact cagacaaccg atcctaagcc cgccaacgct 6240 gatctctccg acccgaatag agctccatca ctggaggact tgaagaagat caagtatgaa 6300 tcaaccacaa ctgccgtcgc caccccagct gagattcagc tgctcggtga tcttttcaag 6360 aaacttggtc ttgacgctaa ctcagtcgca cccgctatgt gggacctcgc tcgagcctac 6420 gccgatgtgc aagcgagtcg ttcagcagtg ctatctggaa ccacaccatc aaaccctgcg 6480 atcacccggc aagctctcgc tcgacagttt tacgtcatta acatcactcc acgccagttc 6540 tgcatgtact tcgccaaggt ggtctggaac ttgctactag actcaaacgt cccacctgct 6600 ggatgggcaa aacagggact tcctgacgat tgcaagttcg ccggcttcga cttctttgaa 6660 ggcgtgcttt cacctgccgc acttgaccca gcagacggcc tcatcagacc tccctctcag 6720 cgtgagattc aagcgcactc cacggcgaaa tatggcgctc ttgccaggca acgctacaga 6780 atggaaactt cgtttccacc ttggctgaag tcactcacgg tagggtcggc ggtgtcaacg 6840 ccatgtacgc cattgaagca cctccagaat tgtaatagaa acactagcaa acttaaatta 6900 gtgtgtggtt tataaagttt tacttccact atcaataaaa taaactattg atatt 6955 //