ID D12539; SV 1; linear; genomic RNA; STD; VRL; 4998 BP. XX AC D12539; D01241; XX DT 10-JUL-1992 (Rel. 32, Created) DT 26-FEB-2008 (Rel. 94, Last updated, Version 9) XX DE Potato virus Y gene for polyprotein, partial cds. XX KW . XX OS Potato virus Y OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-4998 RA Hidaka M.; RT ; RL Submitted (08-NOV-1991) to the INSDC. RL Contact:Makoto Hidaka Faculty of Agriculture, The University of Tokyo, RL Department of Biotechnology; 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113, Japan XX RN [2] RX DOI; 10.1093/nar/20.13.3515. RX PUBMED; 1630927. RA Hidaka M., Yoshida Y., Masaki H., Namba S., Yamashita S., Tsuchizaki T., RA Uozumi T.; RT "Cloning and sequencing of the 3' half of a potato virus Y (O strain) RT genome encoding the 5k protein, protease, polymerase and coat protein"; RL Nucleic Acids Res. 20(13):3515-3515(1992). XX DR MD5; a3c339c8dd65b0cb332ffe683cbf158f. XX FH Key Location/Qualifiers FH FT source 1..4998 FT /organism="Potato virus Y" FT /strain="O" FT /mol_type="genomic RNA" FT /db_xref="taxon:12216" FT CDS <1..4670 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="GOA:Q85274" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q85274" FT /protein_id="BAA02107.1" FT /translation="IQRLGRVGRFKKGVALRIGHTEKGIIEIPSMVATEAALACFAYNL FT PVMTGGVSTSLIGNCTVRQVKTMQQFELSPFFIQNFVAHDGSMHPIIHDILKKYKLRDC FT MTPLCDQSIPYRASSTWLSVSEYERLGVALEIPKQVKIAFHIKEIPPKLHEMLWETVVK FT YKDVCLFPSIRASSISKIAYTLRTDLFAIPRTLILVERLLEEERVKQSQFRSLIDEGCS FT SMFSIVNLTNTLRARYAKDYTAENIQKLEKVRSQLKEFSNLDGSACEENLIKRYESLQF FT VHHQAATSLAKDLKLKGIWKKSLVAKDLIIAGAVAIGGIGLIYSWFTQSVETVSHQGKN FT KSKRIQALKFRHARDKRAGFEIDNNDDTIEEFFGSAYRKKGKGKGTTVGMGKSSRRFIN FT MYGFDPTEYSFIQFVDPLTGAQIEENVYADIRDVQERFSEVRTKMVENDEIEMQALGSN FT TTIHAYFRKDWSDKALKIDLMPHNPLKICDKTNGIAKFPEREFELRQTGPAVEVDVKDI FT PAQEVEHEAKSLMRGLRDFNPIAQTVCRLKVSVEYGTSEMYGFGFGAYIIANHHLFRSY FT NGSMEVRSMHGTFRVKNLHSLSVLPIKGRDIILIKMPKDFPVFPQKLHFRAPTQNERIC FT LVGTNFQEKYASSIITEASTTYNIPGSTFWKHWIETDNGHCGLPVVSTADGCLVGIHSL FT ANNAHTTNYYSAFDEDFESKYLRTNEHNEWVKSWIYNPDTVLWGPLKLKDSTPKGLFKT FT TKLVQDLIDHDVVVEQAKHSAWMFEALTGNLQAVATMKSQLVTKHVVKGECRHFKEFLT FT VDAEAEAFFRPLMDAYGKSLLNRDAYIKDIMKYSKPIDVGIVDCDAFEEAINRVIIYLQ FT VHGFKKCAYVTDEQEIFKALNMKAAVGAMYGGKKKDYFEHFTDADKEEIVMQSCLRLYK FT GLLGIWNGSLKAELRCKEKILANKTRTFTAAPLDTLLGGKVCVDDFNNQFYSKNIECCW FT TVGMTKFYGGWDKLLRRLPENWVYCDADGSQFDSSLTPYLINAVLAIRSTYMEDWDVGL FT QMLRNLYTEIIYTPISTPDGTIVKKFRGNNSGQPSTVVDNSLMVVLAMHYAFIKECIEF FT EEIDSTCVFFVNGDDLLIAVNPDKEGILDRLSQHFSDLGLNYDFSSRTRNKEELWFMSH FT RGLLIEGMYVPKLEEERIVSILQWDRADLAEHRLEAICAAMIESWGYSELTHQIRRFYS FT WLLQQQPFATIAQEGKAPYIASMALRKLYMDRAVDEEELRAFTEMMVALDDEFEFDSYE FT VHHQANDTIDAGGGNKRDAKLEQDSIQSNPNKGKDKDVNAGTSGTHTVPRIKAITSKMR FT MPKSKGATVLNLEHLLGYAPQQIDISNTRATQSQFDTWYEAVRMAYDIGETEMPTVMNG FT LMVWCIENGTSPNVNGVWVMMDGNEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEM FT RNKKEPYMPRYGLIRNLRDVGLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQPRL FT FGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM" FT mat_peptide <1..857 FT /product="cytoplasmic inclusion body" FT mat_peptide 858..1013 FT /product="5-kD protein" FT mat_peptide 1014..2309 FT /product="protease" FT mat_peptide 2310..3866 FT /product="RNA polymerase" FT mat_peptide 3867..4667 FT /product="coat protein" XX SQ Sequence 4998 BP; 1562 A; 926 C; 1201 G; 1309 T; 0 other; gaattcaaag gctgggtcgt gttggacgct tcaagaaagg agttgcattg cgcattggac 60 acactgagaa gggaattatt gaaattccaa gcatggtcgc tactgaggca gctcttgctt 120 gctttgcata taatttgcca gtgatgacag gaggcgtctc aactagtctg attggcaatt 180 gtactgtgcg ccaggttaaa acaatgcagc agtttgaatt gagtcccttc tttatccaga 240 atttcgttgc tcatgatgga tcaatgcatc ctatcataca tgacattctt aagaagtaca 300 aacttcgaga ttgtatgaca cctctgtgcg atcagtctat accatacagg gcatcgagca 360 cttggttatc ggttagtgaa tatgagcgac ttggagtggc cttagaaatt ccaaagcaag 420 tcaaaattgc atttcatatc aaagagatcc ctcctaagct ccacgaaatg ctttgggaaa 480 cggttgttaa gtacaaagac gtttgcttat ttccaagcat tcgagcatcg tccatcagca 540 aaattgcata cacattgcgt acagacctct tcgccatccc aagaacttta atattggtgg 600 agagactgct tgaagaggag cgagtgaagc agagccaatt cagaagtctc atcgatgaag 660 ggtgctcaag catgttttca attgtcaact tgaccaacac tctcagagct agatatgcaa 720 aagattacac cgcagagaac atacaaaaac ttgagaaagt gagaagtcaa ttaaaagaat 780 tctcaaatct ggatggttct gcatgtgagg aaaatttaat aaagaggtac gaatctttgc 840 agttcgttca tcaccaagct gcgacgtcac ttgcaaagga tctcaagttg aaggggattt 900 ggaagaagtc attagtggct aaagacttga tcatagcagg cgctgttgca attggtggta 960 taggactcat atatagttgg ttcacacaat cagttgaaac tgtgtctcac caagggaaaa 1020 ataaatccaa aagaatccaa gccttgaagt ttcgccatgc tcgtgacaaa agggctggct 1080 ttgaaattga caacaatgat gacacaatag aggaattctt tggttctgca tacaggaaaa 1140 agggaaaagg caaaggtacc acagttggta tgggcaagtc aagcaggagg ttcatcaaca 1200 tgtatgggtt tgatccaaca gagtactcat tcatccaatt cgttgatcca ctcactgggg 1260 cacaaataga agagaatgtc tatgctgaca ttagagatgt tcaagagaga tttagtgaag 1320 tgcgaacgaa aatggttgag aatgatgaaa ttgaaatgca agccttgggc agtaacacga 1380 ccatacatgc atacttcagg aaagattggt ctgacaaagc tttgaagatt gatttgatgc 1440 cacataaccc actcaaaatt tgtgacaaaa caaatggcat tgccaaattt cctgagagag 1500 agttcgagct aaggcagact gggccagctg tagaagtcga cgtgaaggac ataccagcac 1560 aggaggtgga acatgaagct aaatcgctca tgagaggctt gagagacttc aacccaattg 1620 cccaaacagt ttgtaggctg aaagtatctg ttgaatatgg gacatcagag atgtacggtt 1680 ttggatttgg agcgtacata atagcgaacc accatttgtt caggagttat aatggttcca 1740 tggaggtacg atccatgcac ggtacattca gggtaaagaa tctacacagt ttgagcgttc 1800 tgccaattaa aggtagggac atcatcctca ttaaaatgcc aaaagatttc cctgtctttc 1860 cacagaaatt gcatttccga gctcctacac agaacgaaag aatttgttta gttggaacca 1920 actttcagga gaagtatgca tcgtcgatca tcacagaagc aagcactact tacaatatac 1980 caggcagcac attctggaag cattggattg aaacagataa tggacactgt ggactaccag 2040 tggtgagcac tgccgatgga tgtctagtcg gaattcacag tttggcaaac aatgcacaca 2100 ccacgaacta ctactcagcc ttcgatgaag attttgaaag caagtacctc cgaaccaatg 2160 agcacaatga atgggtcaag tcttggattt ataatccaga cacagtgttg tggggcccgt 2220 tgaaacttaa agacagcact cctaaagggt tatttaaaac aacaaagctt gtgcaagatc 2280 taatcgatca tgatgtagtg gtggagcaag ctaagcactc tgcgtggatg tttgaagcct 2340 tgacaggaaa tttgcaagct gttgcaacaa tgaagagcca attagttacc aagcatgtag 2400 ttaaaggaga gtgtcgacac ttcaaagaat tcctgactgt ggatgcagaa gcagaggcat 2460 tcttcaggcc tttgatggat gcgtatggga aaagcttgct gaatagagac gcgtacatca 2520 aggacataat gaagtattca aaacctatag atgttggtat cgtggactgt gatgcatttg 2580 aggaagccat caatagggtt atcatctacc tgcaagtgca cggcttcaag aagtgtgcat 2640 atgtaactga cgagcaagaa attttcaaag cgctcaacat gaaagctgca gttggagcca 2700 tgtatggtgg caaaaagaaa gactatttcg aacatttcac tgatgcagat aaggaagaaa 2760 tagtcatgca aagctgtctg cgattgtata aaggcttgct cggcatttgg aatggatcat 2820 tgaaggcaga gctccggtgt aaggagaaga tacttgcaaa taagacgagg acattcactg 2880 ctgcacctct agacactttg ctgggtggta aagtgtgtgt tgatgacttc aataatcaat 2940 tttattcaaa gaatattgaa tgctgttgga cagttgggat gactaagttt tatggtggtt 3000 gggataaatt gcttcggcgt ttacctgaga attgggtata ctgtgatgcc gatggctcac 3060 agtttgatag ttcactaact ccatacttaa ttaatgctgt tctcgccatc agaagcacat 3120 acatggaaga ctgggatgtg gggttgcaaa tgctgcgtaa tttatacact gagattattt 3180 acacacctat ttcaactcca gatggaacaa ttgttaagaa gttcagagga aataacagtg 3240 gtcagccttc tactgttgtg gacaactctc ttatggtcgt ccttgccatg cactatgctt 3300 tcatcaaaga atgcattgag tttgaagaga ttgacagcac gtgcgtgttc tttgtcaatg 3360 gtgatgattt gctgattgct gtgaatccgg acaaagaggg cattcttgac agattgtcac 3420 aacacttctc agatctcggt ttaaattatg atttctcgtc aagaacaaga aataaggaag 3480 agttgtggtt catgtctcat agaggcctac tgattgaggg tatgtacgtg ccaaaacttg 3540 aagaagaaag gattgtgtcc attctccaat gggacagagc agacttggcc gaacacaggc 3600 ttgaggcaat ttgcgcagct atgatagagt cctggggcta ttctgaacta acacaccaaa 3660 tcaggagatt ctactcatgg ttattgcaac agcaaccttt tgcaacaata gcgcaggaag 3720 ggaaggctcc ttatatagca agcatggcat taaggaaact gtatatggat agggctgtgg 3780 atgaggaaga gctaagagcc ttcactgaaa tgatggtcgc attagacgat gagtttgagt 3840 ttgactctta tgaagtacac catcaagcaa atgacacaat tgatgcagga ggaggcaata 3900 agagagatgc aaaactagag caagacagca tccagtcaaa cccgaacaaa ggaaaagata 3960 aggatgtgaa tgctggtaca tccgggacac atactgtgcc gagaatcaag gctatcacgt 4020 ccaaaatgag aatgcccaaa agcaagggag caaccgtgct aaacttagaa cacttgcttg 4080 ggtacgctcc acaacaaatt gatatttcaa atactcgggc aactcaatca cagtttgata 4140 cgtggtatga ggcagtgcgg atggcatacg acataggaga aactgagatg ccaactgtga 4200 tgaatgggct tatggtttgg tgcattgaaa atggaacctc gccaaatgtc aacggagttt 4260 gggttatgat ggatgggaat gaacaagttg agtacccgtt gaaaccaatc gttgagaatg 4320 caaaaccaac ccttaggcaa atcatggcac atttctcaga tgttgcagaa gcgtatatag 4380 aaatgcgcaa caaaaaggaa ccatatatgc cacgatatgg tttaattcga aatctgcggg 4440 atgtaggttt agcgcgttat gcctttgact tttatgaggt cacatcacga acaccagtga 4500 gggctaggga agcgcacatt caaatgaagg ccgcagcatt gaaatcagcc caacctcgac 4560 ttttcgggtt ggacggtggc atcagtacac aagaggagaa cacagagagg cacaccaccg 4620 aggatgtctc tccaagtatg catactctac ttggagtcaa gaacatgtga tgtagtgtct 4680 ctccggacga tatataagta tttacatatg cagtaagtat tttggctttt cctgtactac 4740 ttttatcata attaataatc agtttgaata ttactaatag atagaggtgg cagggtgatt 4800 tcgtcattgt ggtgactcta tctgttaatt ccgcattatt aaatcttaga taaaagtgcc 4860 gggttgtcgt tgttgtggat gattcatcga ttaggtgatg ttgcgattct gtcgtagcag 4920 tgactatgtc tggatctatc tacttgggtg gtgttgtgat ttcgtcataa cagtgactgt 4980 aaacttcaat caggagac 4998 //