ID D12537; SV 1; linear; genomic RNA; STD; VRL; 3361 BP. XX AC D12537; D01199; XX DT 14-JUL-1992 (Rel. 32, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 7) XX DE Cucumber mosaic virus segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3361 RA Takanami Y.; RT ; RL Submitted (04-OCT-1991) to the INSDC. RL Yoichi Takanami, Kyushu University, Deapertment of Agriculture; 6-10-1 RL Hakozaki, Higashi-ku, Fukuoka 812, Japan (Tel:81-92-641-1101(ex.6165), RL Fax:81-92-641-2928) XX RN [2] RP 1-3361 RA Kataoka J., Masuta C., Takanami Y.; RT "Complete nucleotide sequence of RNA1 of cucumber mosaic virus Y strain and RT evolutionary relationships among genome RNAs of the virus strains"; RL Nippon Shokubutsu Byori Gakkaiho 56:501-507(1990). XX DR MD5; 9813010b09609831da7c16b050c34f19. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC136033; 11884564. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3361 FT /organism="Cucumber mosaic virus" FT /segment="RNA1." FT /strain="Y" FT /mol_type="genomic RNA" FT /note="clones pBCY11, pBCY12 and pCY1N4" FT /db_xref="taxon:12305" FT CDS 98..3079 FT /codon_start=1 FT /product="1a protein" FT /note="Nucleotide binding site and GDT motif were found. It FT suggests the protein would be involved in virus RNA FT replication." FT /db_xref="GOA:Q83264" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q83264" FT /protein_id="BAA02105.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTTHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFASQGLAGALRLCGTLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHSERLMNMRKIILNDPQQFDGRQ FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSETEDVTPLVGKLNSTVFSRVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKILAAQKAEKLAEKLAQPVSEVSDSPETSSQTPDDTADVCGKEREVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKHLHDTTVSNLKRIWNMAGGDDKRSFLEGNLKFVFD FT SYFTVDPMVNIHFSTGRWVRPVPEGIVYPVGYNERGLGPKSDGELYIVNSECVICNSES FT LSTVYGRSLQTPTGTISQVDGVAGCGKTMPIKSIFEPSTDMIVTANKKSAQDVRMALFK FT SSDSKEACTFVRTADSVLLNECPTVSRVLEDEVVLLHFGQLCAVMSKLKAVRAICFGDA FT EQIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTK FT WVSQSKVRRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERI FT KTVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAS FT VARA" XX SQ Sequence 3361 BP; 850 A; 739 C; 812 G; 960 T; 0 other; gttttattta caagagcgta cggttcaatc cctgcctccc ctgtaaaact accctttgaa 60 aacttctctc tcttaatctt ttttttttta aattcctatg gcgacgtcct cgttcaacat 120 caatgaattg gtagcctccc acggcgataa aggactactc gcgaccgccc tcgttgataa 180 gacaactcat gagcaactcg aggagcaatt acaacatcaa cgtaggggcc gtaaggtcta 240 catccgaaac gttttgggtg taaaggattc cgaggtcatc cggaatcggt atggaggaaa 300 gtacgacctc catcttaccc agcaggagtt tgcttcccag ggtctagctg gtgcccttcg 360 gctgtgtgga actctcgatt gtctagactc tttcccttca tcaggtcttc ggcaggacct 420 cgtcttagac ttcggaggaa gttgggtcac acattacctc cgcggacata acgtacactg 480 ttgttcccct tgtttgggta tccgcgataa gatgcgccat tcggaacgct taatgaacat 540 gcgcaagatc atcttgaacg atccacaaca gttcgatggt cggcagccgg atttctgcac 600 tcaaccggct gcggattgca aagtacaagc ccactttgct atatctattc atggaggtta 660 tgatatgggc tttagaggat tatgtgaagc gatgaatgct cacggaacca ctattttgaa 720 gggaacgatg atgttcgatg gtgcgatgat gtttgacgac caaggtgtaa tacccgaact 780 taattgtcag tggaggaaga tcagaagtgc tttctccgaa actgaagacg tcacaccact 840 ggttggtaag ttgaattcca cagttttttc ccgcgtgcgg aagtttaaga cgatggtagc 900 ttttgatttc atcaatgagt ctactatgtc ttatgttcat gattgggaga atataaaatc 960 ttttcttaca gaccagactt attcgtaccg agggatgact tacggtatag aacgctgcgt 1020 tattcacgct ggtatcatga cgtacaagat tatcggcgta cctgggatgt gcccacccga 1080 actcattcga cattgtattt ggttcccctc tattaaagac tatgttggtc taaagattcc 1140 cgcgtcgcag gatttggttg agtggaaaac agtgcggatt ttaacgtcaa cattacgtga 1200 gactgaagag attgccatga ggtgttataa cgataagaaa gcgtggatgg aacaattcaa 1260 ggttatccta ggtgttctat ctgcgaaatc atctaccatt gtcattaatg gtatgtccat 1320 gcaatcaggc gagcgaatag atattaacga ctatcattac atcggtttcg ccattcttct 1380 tcacacaaaa atgaagtatg aacaacttgg aaaaatgtat gatatgtgga atgcttcgag 1440 tatttcgaag tggttcgccg cgttgactcg tccgctgcgt gtgtttttct ccagtgttgt 1500 tcacgcacta ttcccgactt tgagaccccg cgaggaaaaa gaattcctga tcaagctctc 1560 caccttcgtg acttttaatg aagagtgctc atttgacggt ggagaggaat gggacgtgat 1620 atcatccgct gcatacgttg ctacgcaggc tgttaccgat gggaagattt tggctgcgca 1680 gaaagccgag aagcttgctg agaagcttgc acaacccgtg agtgaagtat cggacagtcc 1740 tgagacgtca tctcaaacgc ctgatgatac tgctgatgtt tgtggaaagg agcgagaggt 1800 ttcggaactc gactccctat cagctcagac acgttccccc atcactagag ttgctgaaag 1860 ggctactgct atgttagagt atgccgctta cgagaaacat ttacacgaca ccacggtgtc 1920 taatttaaaa cgtatttgga acatggcagg cggtgatgac aaaagaagct tcctcgaggg 1980 taatctgaag tttgttttcg acagttattt taccgttgat cctatggtga acattcattt 2040 ctccacgggt cggtgggtgc gtcctgtgcc cgagggtatt gtttatcctg tcggttataa 2100 tgaacgcggt ttaggtccga agtctgatgg agagctttac attgtcaata gtgaatgtgt 2160 gatttgtaac agtgagtctt tatctactgt ctacggccgt tctcttcaaa ctccaaccgg 2220 gaccattagt caagttgacg gagttgctgg ttgtgggaaa accatgccaa ttaaatccat 2280 ttttgagccg tccactgaca tgatcgttac cgcgaacaag aagtctgccc aagatgtacg 2340 tatggcactt ttcaaatcgt cggattccaa agaagcttgc accttcgttc gaacagccga 2400 ttctgtccta cttaatgaat gtccgactgt tagtagggtt ttggaagatg aggtcgtttt 2460 gctacatttt ggtcaattat gtgccgtcat gtctaagttg aaggctgtcc gagctatatg 2520 ttttggggat gcggagcaga ttgccttttc ttcgcgagat gcctcatttg acatgcgttt 2580 ctctaagatc attcctgatg aaactagtga tgctgacacc acattccgta gcccacaaga 2640 tgttgtgccg cttgtgcgtt taatggctac gaaggccctt ccgaaaggaa cccattcaaa 2700 atacacgaaa tgggtttctc aatctaaagt gagaagatct gttacatctc gtgccatcgc 2760 tagcgtgaca ttggttgact tggattcgtc caggttctat ataacgatga cccaagctga 2820 taaggcctca ctgatttcaa gggcgaaaga gatgaatcta ccaaagactt tctggaatga 2880 aaggattaaa accgtgcatg agtctcaagg tatttctgaa gaccacgtta ctttggtaag 2940 attaaagagt acaaaatgtg acctgtttaa acagttttct tattgtcttg ttgcgctgac 3000 tagacacaag gtcacgttcc gctacgagta ctgtggtgta ttgaacggcg atttaatcgc 3060 cagtgttgct cgtgcttagc ggtctcctcc ttcgggcggg tcctgagttg gcggtaatct 3120 gcaaaccgtc tgaagtcact aaacacatcg tgtggtgaac gggttgtcca tccagctaac 3180 ggctaaaatg gtcagtcgtg gagaaatcca cgccagtaga cttacaagtc tctgaggcac 3240 ctttgaaacc atctcctagg tttcttcgga aggacttcgg tccgtgtact tctagcacaa 3300 cgtgctagtt tcagggtacg ggtgtccccc cactctcgtg ggggcctcca aaaggagacc 3360 a 3361 //