ID   D12499; SV 1; linear; genomic RNA; STD; VRL; 2217 BP.
XX
AC   D12499; D01201;
XX
DT   14-JUL-1992 (Rel. 32, Created)
DT   22-FEB-2008 (Rel. 94, Last updated, Version 9)
XX
DE   Cucumber mosaic virus genes for 3a protein, coat protein, complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2217
RA   Takanami Y.;
RT   ;
RL   Submitted (04-OCT-1991) to the INSDC.
RL   Contact:Yoichi Takanami Kyushu University, Deapertment of Agriculture;
RL   6-10-1 Hakozaki, Higashi-ku, Fukuoka 812, Japan
XX
RN   [2]
RA   Nitta N., Masuta C., Kuwata S., Takanami Y.;
RT   "Comparative studies on the nucleotide sequence of cucumber mosaic virus
RT   RNA3 between Y strain and Q strain";
RL   Nippon Shokubutsu Byori Gakkaiho 54:516-522(1988).
XX
DR   MD5; 6443722e4a8a4bf88acfd3391d96514a.
DR   EuropePMC; PMC112760; 10400773.
DR   EuropePMC; PMC136033; 11884564.
DR   EuropePMC; PMC3550734; 23637513.
DR   EuropePMC; PMC3550809; 23730005.
DR   EuropePMC; PMC416521; 15163757.
DR   RFAM; RF01084; TLS-PK3.
XX
CC   Yoichi Takanami
CC   Life Science Research Laboratory
CC   Japan Tobacco Inc.
CC   6-2, Umegaoka, Midori-ku
CC   Yokohama 227
CC   Japan
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2217
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="3"
FT                   /strain="Y"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12305"
FT   CDS             121..960
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /note="cell to cell movement"
FT                   /db_xref="GOA:P18028"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/Swiss-Prot:P18028"
FT                   /protein_id="BAA02060.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   CDS             1260..1916
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:P18027"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/Swiss-Prot:P18027"
FT                   /protein_id="BAA02061.1"
FT                   /translation="MDKSESTSAGRNRRRRLRRGSRSASSSSDANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVSASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
XX
SQ   Sequence 2217 BP; 520 A; 518 C; 527 G; 652 T; 0 other;
     gtaatctaac cacctgtgtg tgtgtgtgtg tgtatcgagt cgtgttgtcc gcacatttga        60
     gtcgtgttgt ccgcacatat atatttattt cgttgtacag tgtgttagat ttcccgaggc       120
     atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac       180
     gatcttcaaa agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac       240
     ctaggccggc atcattggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc       300
     gaagtaaccc acggtcgtat tgcttccttc tttaaatctg gatatgatgt tggtgaattg       360
     tgctcaaaag gatacatgag cgtccctcaa gtgttatgtg ctgttactcg aacagtttcc       420
     actgatgctg aagggtcctt gagaatttac ttagctgatc taggtgacaa ggagttatct       480
     cccatagatg ggcagtgcgt ttcgttacat aaccatgatc ttcccgcttt ggtgtctttc       540
     cagccgacgt atgattgtcc tatggaaaca gttgggaatc gtaagcggtg ttttgctgtt       600
     gttatcgaaa gacatggtta cattgggtat accggtacca cagctagcgt gtgtagtaat       660
     tggcaagcaa ggttttcatc taagaataac aactacactc atatcgcagc tgggaagact       720
     ctagtactgc ctttcaacag attagctgag caaacaaaac cgtcagctgt cgctcgcctg       780
     ttgaagtcgc aactgaacaa cattgaatct tcgcaatatt tgttaacgaa cgcgaagatt       840
     aatcagaatg cgcgcagtga gtccgaggaa ttaaatgttg agagccctcc cgccgcaatc       900
     gggagttctt ccgcgtcccg ctccgaagcc ttcagaccgc aggtggttaa cggtctttag       960
     cactttggtg cgtattagta tataagtatt tgtgagtctt acataatact atatctatag      1020
     tgtcctgtgt gagttgatac agtagacatc tgtgacgcga tgccgtgttg agaagggaac      1080
     acatctggtt ttagtaagcc tacatcatag ttttgaggtt caattcctct tactccctgt      1140
     tgagccccct tactttctca tggatgcttc tccgcgagat tgcgttattg tctactgact      1200
     atatagagag tgtgtgtgtg ctgtgttttc tcttttgtgt cgtagaattg agtcgagtca      1260
     tggacaaatc tgaatcaacc agtgctggtc gtaaccgtcg acgtcgtttg cgtcgtggtt      1320
     cccgctccgc ctcctcctcc tcggatgcta actttagagt cttgtcgcag cagctttcgc      1380
     gacttaacaa gacgttagca gctggtcgtc caactattaa ccacccaacc tttgtaggga      1440
     gtgaacgctg taaacctggg tacacgttca catctattac cctaaagcca ccaaaaatag      1500
     accgtgggtc ttattatggt aaaaggttgt tattacctga ttcagtcacg gaatatgata      1560
     agaagcttgt ttcgcgcatt caaattcgag ttaatccttt gccgaaattt gattctaccg      1620
     tgtgggtgac agtccgtaaa gtttctgcct cctcggactt atccgttgcc gccatctctg      1680
     ctatgttcgc ggacggagcc tcaccggtac tggtttatca gtatgctgca tctggagtcc      1740
     aagctaacaa caaattgttg tatgatcttt cggcgatgcg cgctgatata ggcgacatga      1800
     gaaagtacgc cgtcctcgtg tattcaaaag acgatgcgct cgagacggac gagttagtac      1860
     ttcatgttga cgtcgagcac caacgcattc ccacatctgg agtgctccca gtctgattcc      1920
     gtgttcccag aatcctccct ccgatctctg tggcgggagc tgagttggca gttctgctat      1980
     aaactgtctg aagtcactaa acgttttacg gtgaacgggt tgtccatcca gcttacggct      2040
     aaaatggtca gtcgtggaga aatctacgcc agcagattta caaatctctg aggcgccttt      2100
     gaaaccatct cctaggtttc ttcggaagga cttcggtccg tgtacctcta gcacaacgtg      2160
     ctagtttcag ggtacgggtg cccccccacc ttcgtggggg cctccaaaag gagacca         2217
//