ID D12477; SV 2; linear; genomic RNA; STD; VRL; 7271 BP. XX AC D12477; D01129; XX DT 16-JUL-1992 (Rel. 32, Created) DT 18-DEC-2007 (Rel. 94, Last updated, Version 12) XX DE Tomato ringspot virus gene for polyprotein, ORF, ORF, complete cds. XX KW . XX OS Tomato ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7271 RA Rochon D.M.; RT ; RL Submitted (08-JUL-1991) to the INSDC. RL Contact:D'Ann M. Rochon Agriculture Canada Research Station; 6660 N. W. RL Marine Dr, Vancouver, B.C. V6T 1X2, Canada XX RN [2] RA Rott M.E., Tremaine J.H., Rochon D.M.; RT "A near perfect 1531 nucleotide repeat at the 3' termini of Tomato ringspot RT virus RNA-1 and RNA-2"; RL Unpublished. XX RN [3] RX PUBMED; 1856689. RA Rott M.E., Tremaine J.H., Rochon D.M.; RT "Nucleotide sequence of tomato ringspot virus RNA-2"; RL J. Gen. Virol. 72:1505-1514(1991). XX RN [4] RX DOI; 10.1016/0168-1702(93)90100-2. RX PUBMED; 8109164. RA Buckley B., Silva S., Singh S.; RT "Nucleotide sequence and in vitro expression of the capsid protein gene of RT tobacco ringspot virus"; RL Virus Res. 30(3):335-349(1993). XX DR MD5; 2d84e9c944733629fa6a5a6b2e893997. DR EuropePMC; PMC3314827; 22218961. XX CC See GenBank accession number M27936 for Ref.1. XX FH Key Location/Qualifiers FH FT source 1..7271 FT /organism="Tomato ringspot virus" FT /map="1-7271" FT /segment="2" FT /mol_type="genomic RNA" FT /note="clones K6, J56 and O35" FT /note="obtained from raspberry" FT /db_xref="taxon:12280" FT CDS 76..5724 FT /codon_start=1 FT /product="polyprotein" FT /note="putative coat protein (60-62K) at the C-terminal FT region" FT /db_xref="GOA:P25247" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P25247" FT /protein_id="BAA02043.1" FT /translation="MSSICFAGGNHARLPSKAAYYRAISDRELDREGRFPCGCLAQYTV FT QAPPPAKTQEKAVGRSADLQKGNVAPLKKQRCDVVVAVSGPPPLELVYPARVGQHRLDQ FT PSKGPLAVPSAKQTSTAMEVVLSAEEAAITAPWLLRPCKGEAPPPPPLTQRQQFAALKK FT RLAVKGQQIIREHIRARKAAKYAAIAKAKKAAALAAVKAAQEAPRLAAQKAAISKILRD FT RDVAALPPPPPPSAARLAAEAELASKAESLRRLKAFKTFSRVRPALNTSFPPPPPPPPA FT RSSELLAAFEAAMNRSQPVQGGFSLPTRKGVYVAPTVQGVVRAGLRAQKGFLNAVSTGI FT VAGARILKSKSQNWFRRSMGIAHDYVEGCMASTVLGCAGPVVQRQEACSVVAAPPIVEP FT VLWVPPLSEYANDFPKLTCSTFTEWQRPRKQSIAISNLFRKLIDRALLVSGVSLIASVL FT LFEIAENFAVRQAVCPVEMPSCATSVSEKSLVSLDEGNFYLRKYLSPPPYPFGRESFYF FT QARPRFIGPMPSMVRAVPQIVQQPTMTEELEFEVPSSWSSPLPLFANFKVNRGACFLQV FT LPQRVVLPDECMDLLSLFEDQLPEGPLPSFSWSSPLPLFANFKVNRGACFLQVLPQRVV FT LPDECMDLLSLFEDQLPEGPLPSFSWSSPLPLFASFKVNRGACFLQVLPARKVVSDEFM FT DVLPFLFSPLVSHQEEEPEMVPAVLEAADSVGDITEAFFDDLECESFYDSYSDEEEAEW FT AEVPRCKTMSELCASLTLAGDAEGLRKSHGVFLKRLVTYLQSFEEPLYSSRAFYSVKVK FT PVYRPKKFEGHIDCTCLDGNMGEWEWRESVDAMWRCPGRLLNTKRTFTRDDWERVQYLR FT IGFNEGRYRRNWRVLNLEEMDLSLHEYPEISSAPVQSSLFSRVVDRGATLASSIPFVTR FT SNCQSSLGTPGLNVHTIHQEAPTTLRAPPFTGARNVMGSSDAGANAAPYRSEARKRWLS FT RKQEDSQEDNIKRYADKHGISFEEARAVYKAPKEGVPTQRSILPDVRDAYSARSAGARV FT RSLFGGSPTTRAQRTEDFVLTSPSAGDASSFSFYFNPVSEQEMAEQERGGNTMLSLDAV FT EVVIDPVGMPGDDTDLTVMVLWCQNSDDQRALIGAMSTFVGNGLARAVFYPGLKLLYAN FT CRVRDGRVLKVIVSSTNSTLTHGLPQAQVSIGTLRQHLGPGHDRTISGALYASQQQGFN FT IRATEQGGAVTFAPQGGHVEGIPSANVQMGAGEHLIQAGPMQWRLQRSQSSRFVVSGHS FT RTRGSSLFTGSVDRTQQGTGAFEDPGFLPPRNSSVQGGSWQEGTEAAYLGKVTCAKDAK FT GGTLLHTLDIIKECKSQNLLRYKEWQRQGFLHGKLRLRCFIPTNIFCGHSMMCSLDAFG FT RYDSNVLGASFPVKLASLLPTEVISLADGPVVTWTFDIGRLCGHGLYYSEGAYARPKIY FT FLVLSDNDVPAEADWQFTYQLLFEDHTFSNSFGAVPFITLPHIFNRLDIGYWRGPTEID FT LTSTPAPNAYRLLFGLSTVISGNMSTLNANQALLRFFQGSNGTLHGRIKKIGTALTTCS FT LLLSLRHKDASLTLETAYQRPHYILADGQGAFSLPISTPHAATSFLEDMLRLEIFAIAG FT PFSPKDNKAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFRNFKIDDWKFEWPARLPD FT ILDDKSEVLLRQHPLSLLISSTGFFTGRAIFVFQWGLNTTAGNMKGSFSARLAFGKGVE FT EIEQTSTVQPLVGACEARIPVEFKTYTGYTTSGPPGSMEPYIYVRLTQAKLVDRLSVNV FT ILQEGFSFYGPSVKHFKKEVGTPSATLGTNNPVGRPPENVDTGGPGGQYAAALQAAQQA FT GKNPFGRG" FT CDS complement(351..956) FT /codon_start=1 FT /product="ORF" FT /db_xref="UniProtKB/Swiss-Prot:P25245" FT /protein_id="BAA02044.1" FT /translation="MAASKAAKSSEDRAGGGGGGGGKEVFKAGRTLLKVLKALSLRRDS FT AFEANSASAANLAAEGGGGGGRAATSRSRRILLMAAFWAARRGASCAALTAARAAAFLA FT LAMAAYLAALRARMCSRMICWPLTASLFFRAANCCLCVRGGGGGASPLQGRRSQGAVIA FT ASSAERTTSIAVEVCLAEGTAKGPFEGWSNLCCPTRAG" FT misc_feature 439..441 FT /note="second in-frame AUG. It's in a favourable Kozak FT context (tgcaatgga)." FT repeat_region 1735..2169 FT /rpt_type=TANDEM FT /rpt_unit_range=1735..1893 FT /rpt_unit_range=2053..2169 FT /rpt_unit_range=1894..2052 FT /experiment="experimental evidence, no additional details FT recorded" FT CDS complement(2517..3101) FT /codon_start=1 FT /product="ORF" FT /db_xref="UniProtKB/Swiss-Prot:P25246" FT /protein_id="BAA02045.1" FT /translation="MPCLSAYLLMLSSWESSCLRLSQRLRASERYGAAFAPASEDPITL FT RAPVKGGARNVVGASWCIVCTFKPGVPREDWQLERVTKGILLAKVAPLSTTLEKREDCT FT GADEISGYSCKERSISSRFKTRQFRRYLPSLKPMRKYCTRSQSSRVNVRFVLSKRPGQR FT HIASTLSRHSHSPILPSRQVQSICPSNFLGR" FT variation 6444 FT /replace="t" FT /citation=[2] FT variation 6495 FT /replace="c" FT /citation=[2] XX SQ Sequence 7271 BP; 1641 A; 1694 C; 1810 G; 2126 T; 0 other; agcgaaaaat ctggtgatat tccaacttct ctcaattcac acttccattg tgtcgttttg 60 ttttcttttc ttttgatgtc ctccatttgt ttcgccggtg gcaaccacgc caggttgcca 120 tcgaaggctg cttactatcg ggctatttcc gatagggagc tggaccgcga gggtcgcttc 180 ccttgcgggt gtctagcaca gtatactgtg caagcccccc ctcctgccaa gacacaggag 240 aaagccgtag gcaggtccgc tgacctccaa aagggtaatg ttgctcccct taagaagcaa 300 cgctgcgatg ttgtggtcgc agtctctgga cctcctcctt tggagttggt ctaccctgcc 360 cgggtagggc aacataggtt ggaccaacct tcaaaaggtc ccttggcagt cccctctgcc 420 aagcaaacct ccactgcaat ggaggttgtt ctttctgctg aggaggcggc tatcaccgcc 480 ccctggcttc ttcgcccctg caagggcgaa gccccccccc ccccccccct tacacagagg 540 cagcaatttg ctgccctaaa gaagaggctg gccgtcaagg gccagcaaat cattcgcgag 600 cacattcgtg ctcgcaaggc ggccaaatat gccgccatcg ccaaagccaa aaaggctgcg 660 gctcttgctg ccgttaaggc agcgcaggag gctcctcgcc tcgcggccca aaaggccgcc 720 atcagcaaga tccttcggga tcgagatgtt gctgctctcc cccctccccc ccctccttct 780 gctgccagat tggcagccga ggccgaattg gcctcaaagg ccgagtctct ccggaggctc 840 aaagccttta aaacttttag cagggtacgc cctgctttaa acacttcttt tcctccccct 900 cccccacccc ctccggctcg gtcttccgag cttttggcag cttttgaggc tgccatgaac 960 aggtctcagc ctgttcaagg gggcttctcc ctccctaccc gcaagggtgt ttatgtcgct 1020 cccaccgttc agggtgtggt gcgcgctggg cttcgtgccc agaagggctt tttgaatgcc 1080 gtctccaccg gcattgtggc tggagctcgc attttaaaga gcaaaagcca aaattggttt 1140 aggaggagca tgggcattgc ccatgattat gttgaaggat gcatggccag cactgtttta 1200 ggttgtgctg ggcctgttgt gcaacgacag gaagcttgca gcgttgttgc tgcacctcct 1260 atagtggagc ccgttttgtg ggttccccca ttgagcgagt acgctaacga ttttcctaag 1320 cttacttgct ctacttttac tgaatggcaa agaccgcgca agcaatctat tgccatttct 1380 aaccttttcc gcaagctcat tgatcgtgct ttgcttgtga gtggcgttag cttgattgcg 1440 agcgtcctcc tatttgagat tgcggaaaat tttgccgtgc gacaggcggt ttgcccagtg 1500 gaaatgccgt cttgcgcaac ctctgtttcg gagaaatcct tagtctcatt ggatgaaggg 1560 aatttttatc tccgtaaata tttatcacca cctccctatc cttttggtag ggaaagtttc 1620 tattttcaag ctaggccccg ttttattggg cctatgcctt ctatggttag ggctgtacca 1680 caaattgtac aacagcctac catgacggag gaactcgaat ttgaagttcc ttcctcatgg 1740 tcttctcctt tgcctctgtt cgcgaatttt aaagtgaata ggggcgcatg ttttttgcaa 1800 gtcctgcctc aaagggttgt tttacccgat gaatgcatgg atttgctttc tctttttgag 1860 gatcaattgc cggaagggcc tttgccttcc tttagttggt cttcaccttt acctctattc 1920 gcgaatttta aagtgaatag gggtgcatgt tttttgcaag tcctgcctca aagggttgtt 1980 ttacctgatg aatgcatgga tttgctttct ctttttgagg atcaattgcc ggaagggcct 2040 ttaccttcct ttagttggtc ttcaccttta cctctattcg cgagttttaa agtgaatagg 2100 ggtgcatgct ttttgcaggt tttgcctgcg cgcaaggtcg tctctgatga gttcatggac 2160 gtcttgccct ttttgttctc tccactggta tcgcaccagg aagaggaacc agaaatggtt 2220 cctgctgtgt tggaagcagc agattcagtt ggtgatatca ccgaagcctt ctttgatgac 2280 ttggaatgtg agtctttcta tgactcatat tctgatgaag aagaagctga gtgggctgaa 2340 gtgccaaggt gtaagactat gtctgaactt tgcgcttctc ttactcttgc cggtgacgcc 2400 gaggggctac gtaagtctca cggggttttt ttaaaacgcc ttgtgactta ccttcagtcc 2460 ttcgaagagc cactttactc ttcacgcgcc ttttatagcg tgaaggtgaa gccagtttat 2520 cgtcccaaaa aatttgaggg acatatcgat tgtacctgcc tcgatggcaa tatgggcgag 2580 tgggaatggc gcgaaagcgt cgacgctatg tggcgttgcc cagggcgctt gctcaataca 2640 aagcgcacat tcactcgcga tgattgggag cgtgtgcaat atttacgcat aggcttcaat 2700 gagggtagat accgccgaaa ttggcgcgtt ttaaaccttg aggagatgga tctctctttg 2760 catgaatatc cagagatttc gtctgcccca gtacagtcct ctcttttttc gagggttgtc 2820 gataggggag ccaccttggc aagtagtatc ccctttgtta ctcgctctaa ctgccagtct 2880 tctctaggaa ctcctggttt aaatgtacat actatacacc aggaagcccc tactacattg 2940 cgagctccac cttttacagg agcgcgcaat gtaatgggat cctctgatgc gggtgcaaat 3000 gctgctccgt accgctcaga agcgcgcaag cgctggctga gtcgtaaaca agaggattcc 3060 caagaagata acattaagag gtatgccgat aagcacggca tttcctttga agaggctaga 3120 gctgtctaca aggccccaaa ggaaggagtg cctacccagc gctccattct gcctgatgtt 3180 agagatgctt attctgcccg ttctgctggc gctcgggttc ggtccctctt cggaggatcc 3240 cctaccacgc gcgcacagag gacggaagat tttgtgttaa cgagcccgtc tgcgggggat 3300 gcaagctcgt ttagttttta ttttaatccc gtttctgagc aagagatggc tgagcaagag 3360 cgtggtggta atactatgct gtctcttgat gcggttgagg tcgttatcga cccagttggc 3420 atgcctggtg atgacactga tttgactgtt atggtcttgt ggtgtcaaaa ttcagatgat 3480 cagcgcgctc tgatcggggc catgtctact tttgtgggca atggcctggc cagagccgtt 3540 ttctatcccg ggcttaaatt attatatgcc aattgtagag tgcgagatgg ccgagtttta 3600 aaggtcattg tgagcagcac aaattcaacg ctcacgcatg gtttgcccca ggctcaagtc 3660 tccattggga ctttgcgcca gcatttgggg ccaggtcatg atcgcactat ctctggtgcc 3720 ctgtatgctt cccaacaaca gggtttcaat atacgcgcca cggaacaagg tggtgctgta 3780 acatttgccc cccaaggggg ccatgttgag ggtatcccca gcgccaatgt acagatgggc 3840 gctggggagc atttaattca agcgggtccc atgcagtggc gcttgcagag gtcgcaatct 3900 tctcgatttg tggtctctgg tcattcgcga acgcgtggaa gctctttgtt tactggaagt 3960 gtcgatagga cgcagcaggg aacgggggct tttgaagacc cgggtttttt accacccagg 4020 aattcttctg ttcagggcgg gtcctggcaa gaaggtactg aagccgctta tttaggcaaa 4080 gttacctgtg cgaaggacgc caagggtgga actttattgc acactttgga tattataaaa 4140 gagtgcaaat cccaaaattt attaaggtat aaagaatggc aacgtcaagg ctttcttcat 4200 ggaaagctta gattgcgctg ctttataccc actaacattt tttgtgggca ttccatgatg 4260 tgttccttgg acgcgtttgg tcgttatgat tcgaacgtgc taggtgctag ttttccagtg 4320 aagttggcaa gtttattgcc aacggaggtg attagtctgg ctgatgggcc cgtggtcacg 4380 tggacgtttg atattgggcg tctgtgtggt catggtctct attattccga gggcgcttat 4440 gcgaggccca aaatttattt tttagttctt tccgataatg atgttcctgc agaagcagat 4500 tggcaattta cctatcagct tttgttcgag gatcatacat tttcgaattc ctttggggcg 4560 gttcctttta ttaccttacc ccatattttt aatagattag atataggtta ttggcgcggg 4620 ccaacagaga tagatttaac atcaactccc gcaccaaacg cctatcgttt acttttcggc 4680 ttgtccactg tcattagtgg taacatgtcg actttgaatg ccaatcaagc cttattgcgt 4740 tttttccagg gctcgaatgg cactttacat gggcgcatta aaaagatagg gacagcactt 4800 acaacctgtt cccttttatt atcgttgcgc cacaaagatg cgagtctcac attggagacc 4860 gcatatcaaa ggccccatta cattttggct gacggacaag gggctttttc attaccaatt 4920 tctacccccc atgcagcaac ctccttttta gaggacatgt tgcgcctgga gatttttgct 4980 attgctgggc cttttagtcc caaagataat aaagcaaaat accaattcat gtgttatttc 5040 gatcacatag aattggttga gggggtacct agaactatag caggcgaaca gcagttcaac 5100 tggtgcagtt ttagaaattt caaaatcgat gactggaagt ttgagtggcc ggctcgcctt 5160 ccagatatac ttgatgataa gtcagaagtg ctcttaaggc aacatccttt atctctgctt 5220 atctcatcta ccggtttttt tacgggtaga gccatttttg ttttccagtg gggtttgaat 5280 actactgctg ggaatatgaa aggttcattt tctgcgcgcc tggcctttgg caagggcgtt 5340 gaggaaattg agcaaacgtc aacagtgcaa ccacttgttg gcgcttgtga agcccgcata 5400 cccgtggagt ttaagactta cacgggttat actacttcgg gtcctcctgg atctatggaa 5460 ccatacattt acgtgaggct tacgcaagct aagcttgtgg ataggctttc tgtgaatgtt 5520 attttacagg agggattttc tttctatgga cctagtgtca aacattttaa gaaagaagtc 5580 ggcacgccta gtgccaccct agggacaaat aatcccgttg ggcgcccacc tgagaacgtc 5640 gatacagggg gtcctggcgg ccagtatgca gctgccttac aagcagccca gcaagctgga 5700 aaaaatcctt tcgggcgtgg ctaagttggc ttcctgaaag gcgagtagct gccgttagca 5760 gcttccaaaa ggtggcctct taattagctt ttaatagggg ttatccagcc ttaagcaagc 5820 tggcaccggt cctgatggac taccaggaaa gcacctggtt tggaagaatt cgagtaaaat 5880 tcttaaatct tgtttactcg tgacttatag tacattcaag aggaatgact catgttttgt 5940 ttatttacat gatggcataa agagttaacg gctcatatgg tgctcattac gttcaagtgt 6000 tgaaggatcc aatagccttg aactgtggtg ccatgtgagg aaatccacgt tatctctgat 6060 tgtcaaaata gactagtcta ggagacgata aatcctatgt gggtgagtcc cactctggcg 6120 agacacgcag tgccttttat ttgtttgagg ttatcaaaca tcatatcttg agtctgcatt 6180 taaattcgaa taatgtagtt gtcatagcct accgatgagt ctgcgagaaa ggttccatga 6240 ggacttgggt tggctaaccc ccacttaatc tcttcataga tcattcgaca gtgtgtcgag 6300 aaactatggg ttttgacacc ttaagggaag cgagagttct cgtatggata tcactctaat 6360 catggtactt accatgccat gtttagagta aatcatcgcc tcgacggtgt gatactttcc 6420 ttaagtttta gtcaaacgat agtctcgttg atcgtatgtg aagcgtggag cgagttcgaa 6480 acgaactgat taccagaggt aggacgctat tgttccaggc gtttcttatg ggcataagct 6540 gtaaacttgg tttcgcaagc catgcagcac ctcccgttac ttgtgtactt tctaggggct 6600 cccggccttc cttccggtac aatacctagt gaagcaagta attgcgttga gggataagag 6660 tagcatgttc ctacttaagg aaggaatatg tcgtgttttc cacacgttag tgttgcaatg 6720 ctgtaatggc actgcagtgc aggaatggtt cccagccact ttttctggga ttctaatcgt 6780 acgtcacaat tgtgtgtgta tcgttgacgg aggagtagcg atcctctacc acgcgagtct 6840 ggaagtgatt accagggcct aagatggcca gcacacggta cgattaaatt tagctgtaat 6900 gtagtggtat gttaagttga gactaactta cccgtacgag ttaaactcta agatggatgt 6960 gtgttctgcc atcttagagg aagtagatgt gtttttacca atctgagacg agccgttaat 7020 tcggtgcttt aatacgtcaa tgataatact cgtgcagttg cagctgcacg agtatgttgg 7080 tacacacagt ctactcggat acggtcgagt taccctcaca atagggatta ctctctcaat 7140 cttaactact gcaaggacgt tgttttcgca gggttttgtt ggtccgtttg tgtttcaaaa 7200 cgctgctttg caattttctt ttttgtttta ttgctttcgt agtgtcgaac tttgtccaag 7260 ttcataaaag c 7271 //