ID D11161; SV 1; linear; genomic RNA; STD; VRL; 3468 BP. XX AC D11161; XX DT 13-JUL-1992 (Rel. 32, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 18) XX DE Garlic latent virus genomic RNA for RNA replicase, coat protein and other DE products, complete and partial cds. XX KW coat protein; RNA replicase. XX OS Garlic latent virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-3468 RA Sumi S.; RT ; RL Submitted (19-MAY-1992) to the INSDC. RL Shin-ichiro Sumi, Wakunaga Pharmaceutical Co., Ltd, Institute for RL Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima RL 739-11, Japan (E-mail:sumi_s@wakunaga.co.jp, Tel:0826-45-2331, RL Fax:0826-45-4351) XX RN [2] RP 1-3468 RA Sumi S.; RT ; RL Unpublished. XX RN [3] RX DOI; 10.1094/Phyto-86-253. RX AGRICOLA; IND20576986. RA Tsuneyoshi T., Sumi S.; RT "Differentiation among garlic viruses in mixed infections based on RT-PCR RT procedures and direct tissue blotting immunoassays"; RL Phytopathology 86(3):253-259(1996). XX DR MD5; bf3118d398cb2628b843f45282219b0e. XX CC Sequence updated (13-Jan-1997) by: Shin-ichiro Sumi XX FH Key Location/Qualifiers FH FT source 1..3468 FT /organism="Garlic latent virus" FT /mol_type="genomic RNA" FT /note="3' portion of GCV genome." FT /db_xref="taxon:12458" FT CDS <1..941 FT /codon_start=3 FT /product="RNA replicase" FT /db_xref="GOA:Q67551" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q67551" FT /protein_id="BAA01931.1" FT /translation="ENHANRSCSDWLADVGLVFSKSQICTKWDNRFRSAKAAQTIVCFQ FT HSVLIRFAPYMRYIEKKVHEVLPKQYYIHSGKGLDELNQWVCDNKFVGFCTESDYEAFD FT ASQDQYIMAFEIALMEYLGLPRSLINDYKYIKTHLGCKMGALAIMRFSGEASTFLFNTL FT ANMLFTFLRYDLNGKESICFAGDDMCANRKLRVSLRHEDFLGKLKLKAKVAFTRRPTFC FT GWNLTFFGIYKKPQLVFERMCIAKETNNLQNCIDNYAIEISFAYVKGEMAVCHMDPEEL FT DAFYNCVRVVVKSRHLLKSNVRELFKNEVET" FT CDS 972..1682 FT /codon_start=1 FT /product="ORF(II)" FT /db_xref="GOA:Q67552" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q67552" FT /protein_id="BAA01932.1" FT /translation="MDVFCKVLIECGFHRLECTGNKCKVVLGVPGCGKSSCIRKLINLD FT SRFIAATFGAPDPLNVTGRRIHSVGELAKIDCTGKFLLLDEFQQGGFEELKPFALFGDV FT CQFFDSDRPCPIADWCKTLSHRVNKPTCDFLREFGFEITSSKEGTLVFGGLYEEELLGV FT VITYCSQVSNLLKAHQVDHFTLASCRGSEFPKVCLCLSDSIIQREDLAKFYVCATRSRG FT DLLILTPDASKPTT" FT CDS 1660..1992 FT /codon_start=1 FT /product="ORF(III)" FT /db_xref="GOA:Q67553" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q67553" FT /protein_id="BAA01933.1" FT /translation="MPLSPPPDHTKTYFAGAIGVCVAICLYTLTRSTLPHVGDNIHSLP FT HGGCYQDGTKRIIYNSPARNFPSSNLVSNLASPFCVLAIIIGLICLSEKFRPSSRTRIS FT CNCNHS" FT CDS 1971..2165 FT /codon_start=1 FT /product="ORF(IV)" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q67554" FT /protein_id="BAA01934.1" FT /translation="MQLQPFIVLVTSLLVTLLFCYSFDNLRTERCTVIITGESVKLIGC FT EFTKDFIDFAKQAKPFGSL" FT CDS 2190..3083 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:P87725" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:P87725" FT /protein_id="BAA01935.1" FT /translation="MANEEEELSRMQNLPTRDPGTIPEQERSKAVNDVGVMDRENFEAV FT LRRSEDRFNKLKEKCLSELSSVRVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL FT VRNYAPESNNMATAEELAKISAKIQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT FT ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDSKGFTENTKY FT AAFDTFDAVTNKAAIQPLEGLIRAPTDSERIAFATHKKLALAKNSQNSRYSNTSAEVTG FT GFFGCFPKHNFRENRC" FT CDS 3044..3373 FT /codon_start=1 FT /product="ORF(VI)" FT /db_xref="GOA:O09491" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:O09491" FT /protein_id="BAA01936.1" FT /translation="MFSKTQFQRESMLIKQRTYRRLLRAIFKLHTNKNCVDVIDIIVNK FT IVCGRTGASKYARARRAKSIGRCPRCFRCAPGFYFTKNCDTKTCTPGISYNEKVKNFIV FT DGVTM" XX SQ Sequence 3468 BP; 949 A; 699 C; 810 G; 1010 T; 0 other; tagagaatca cgcaaatcgg tcctgttcgg attggttagc tgacgtgggt ctagtttttt 60 cgaaaagtca gatttgcacg aagtgggaca atcgctttcg gtctgcaaaa gcggcacaaa 120 cgattgtttg ctttcagcac tcagtgctaa taaggtttgc tccctacatg cgctatattg 180 aaaagaaagt gcacgaagtt ttgcccaaac agtattatat tcactctggc aaaggattgg 240 atgagctgaa tcaatgggta tgcgataata aatttgtcgg tttttgtact gagtcggatt 300 atgaagcttt cgatgcgtca caggatcaat acatcatggc tttcgagatc gctctgatgg 360 aataccttgg cctgcccaga tcattgatca atgattataa gtatatcaag actcacttgg 420 gttgtaagat gggagctctg gccattatga gattttccgg cgaagctagt accttcttat 480 tcaacacttt ggctaatatg ctcttcacct ttttgcgata tgatttaaat ggaaaagaga 540 gtatttgttt tgcaggggat gacatgtgcg ccaatcggaa attgcgcgtc agcttaaggc 600 atgaggattt cttgggaaag cttaagttga aggcgaaggt tgcttttact agaaggccca 660 ctttttgtgg ttggaatttg actttctttg gaatatacaa aaaacctcaa ttggtcttcg 720 aaaggatgtg catagccaag gaaaccaaca acctacagaa ttgcatcgac aactacgcca 780 tcgagataag ttttgcttat gtgaaaggcg agatggctgt ttgccacatg gaccctgaag 840 agctcgatgc gttctacaat tgtgtgcgtg tagtagtgaa aagcaggcat cttttaaaat 900 caaacgttcg tgagcttttc aagaacgaag ttgaaacttg agcttaggta ttagctatac 960 tatcgatata tatggatgtg ttttgtaaag ttttaattga gtgtggtttt catagattag 1020 aatgtactgg aaataagtgc aaagtcgtac ttggcgtgcc cggttgcggt aaaagtagtt 1080 gcattcgtaa attgattaat ttagattcgc gtttcattgc tgccaccttc ggtgccccag 1140 acccgctgaa cgttacggga cggaggattc actctgttgg cgaacttgct aagattgatt 1200 gcacggggaa atttctttta cttgacgaat ttcagcaggg tggtttcgag gaactcaaac 1260 cgtttgccct ctttggtgac gtgtgccaat ttttcgattc tgatagaccc tgccccattg 1320 ctgactggtg taaaacattg agccaccgcg ttaataaacc cacttgtgat ttcttaaggg 1380 aatttggttt tgagataact tccagtaagg agggtacttt ggttttcgga gggttgtacg 1440 aagaggagtt gctaggtgtc gtaattactt actgttctca agtgtcaaat ttgctcaaag 1500 ctcaccaggt cgaccacttc actctcgcaa gctgccgtgg ttccgagttc ccgaaagtgt 1560 gtctctgttt gagtgattcc attatacaga gggaagatct agcgaaattt tacgtttgtg 1620 ccacacgaag tcgtggggat ttgcttatcc taactccgga tgcctctaag cccaccacct 1680 gatcatacca aaacttattt tgccggagcc ataggggttt gtgtagctat ctgtttgtac 1740 actttgactc gctcaacttt gccgcacgtc ggggataaca ttcatagttt accgcacgga 1800 ggttgctatc aggacggcac caaaaggata atttacaata gccccgccag gaatttcccc 1860 agtagtaact tagtgtcaaa tcttgcttcg cccttctgtg tgcttgctat catcatcggt 1920 ctaatttgtt tgagtgagaa gtttaggcca agttcgagaa cacgcatctc atgcaattgc 1980 aaccattcat agttctcgtc actagtctcc tagttactct gctgttttgc tatagtttcg 2040 acaatttgag aaccgaaagg tgcaccgtca tcatcactgg tgagtccgtc aagctcattg 2100 gctgcgaatt cacaaaagat ttcatcgatt tcgcaaaaca agcgaaaccc tttggttcac 2160 tttaggttaa cagcgctcta attgatatta tggctaacga agaagaagaa ctcagtagaa 2220 tgcaaaacct gcctacccgc gatcccggaa ctatccccga gcaagaacgt agcaaggcag 2280 ttaatgatgt tggcgtgatg gatcgtgaga attttgaagc tgtgttgcgg agaagtgaag 2340 atagattcaa taagcttaag gagaaatgcc tgtcggaact atctagcgtg agagtgacca 2400 attgcgggtg ggagtcaggg agacccaaag cacaattagc cgatagtctt aagggggatg 2460 catccaacat tttcacacgc ccctcaatgg atgccttgct agtgaggaac tacgcgcctg 2520 agagcaacaa tatggctacc gccgaagagt tagcgaaaat ttctgctaaa atacaggctc 2580 tcggcgctcc tgaagaatgc ttggccgaag ttttctggga tatctgtatg tattgtacca 2640 ctgcaggcag ttcgccaaat gtgaatccca aaggtactat ctcagtcggg ggtaaagtcg 2700 tgactcgaga tatggttgtc gctgtgatca aggagtattc cacattacgt caagtctgtc 2760 gttgctacgc accagtggtc tggaattaca tgctattaaa tgaacaacca ccagctaatt 2820 gggattccaa aggatttact gagaacacta aatacgcggc tttcgatact tttgatgctg 2880 tcacgaacaa ggctgcaatc caaccactcg agggccttat tagagccccg actgactcgg 2940 aacgcatcgc ttttgcgacg cacaagaaat tagctctggc gaagaattcc cagaattcac 3000 gttattccaa cacttctgct gaagttaccg gtggcttctt cggatgtttt ccaaaacaca 3060 atttcagaga gaatcgatgt tgatcaagca aaggacttac cgtagactat tgcgtgctat 3120 atttaagttg catactaata agaactgtgt ggatgtgata gacatcatcg ttaataaaat 3180 agtgtgtgga agaactggag catctaaata tgctcgagct cgtagagcta agagtattgg 3240 taggtgcccc cgctgcttca ggtgtgctcc tggtttttat tttactaaaa actgtgatac 3300 taaaacttgt accccaggca ttagctataa tgaaaaagtc aagaacttta tagttgatgg 3360 tgtaacaatg tgaaacccta ctacagttct tggcttgttg cccataaaac ctaaataatg 3420 catcaacgtg ggaacatata aaataatttg tttttaaaat attttcgc 3468 //