ID D11032; SV 1; linear; genomic RNA; STD; VRL; 5179 BP. XX AC D11032; D01214; XX DT 07-MAY-1992 (Rel. 31, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 13) XX DE Barley yellow dwarf virus (ISOLATE P-PAV) genomic RNA, complete sequence. XX KW . XX OS Barley yellow dwarf virus (ISOLATE P-PAV) OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RX PUBMED; 2273382. RA Vincent J.R., Ueng P.P., Lister R.M., Larkins B.A.; RT "Nucleotide sequences of coat protein genes for three isolates of barley RT yellow dwarf virus and their relationships to other luteovirus coat protein RT sequences"; RL J. Gen. Virol. 71:2791-2799(1990). XX RN [2] RP 1-5179 RX PUBMED; 1538199. RA Ueng P.P., Vincent J.R., Kawata E.E., Lei C., Lister R.M., Larkins B.A.; RT "Nucleotide sequence analysis of the genomes of the MAV-PS1 and P-PAV RT isolates of barley yellow dwarf virus"; RL J. Gen. Virol. 73:487-492(1992). XX DR MD5; cc7a348e2d511eecbf006f03fd97e3fe. DR EuropePMC; PMC112095; 10846080. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5179 FT /organism="Barley yellow dwarf virus (ISOLATE P-PAV)" FT /isolate="P-PAV" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /db_xref="taxon:31724" FT CDS 142..1161 FT /codon_start=1 FT /product="ORF1" FT /db_xref="GOA:P29045" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/Swiss-Prot:P29045" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA01785.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEAKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARREPLDVLDSVGF" FT CDS <1146..2744 FT /codon_start=1 FT /product="ORF2" FT /db_xref="GOA:Q65876" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q65876" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA01786.1" FT /translation="LCGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLS FT QTHLGLVYKAPNASLHNALVAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIE FT EVGYCRTYPAQLLANSYSAGKRAMYHKAIASLRTVPYHQKDANVQAFLKKEKHWMTKDI FT APRLICPRSKRYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQK FT FACPVAIGVDASRFDQHVSEQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKM FT LRFKVRGHRMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKL FT FDGMYDHFLQYGFNMVTEKPVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLS FT MLNQSDVKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDE FT RLQGRRTYNETPITNHSRMSYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQ FT SILLSIPENHSQIEY" FT CDS 2858..3460 FT /codon_start=1 FT /product="viral coat protein" FT /note="ORF3" FT /db_xref="GOA:Q00011" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q00011" FT /citation=[1] FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA01787.1" FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTAAKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2901..3362 FT /codon_start=1 FT /product="ORF4" FT /db_xref="GOA:P29047" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/Swiss-Prot:P29047" FT /citation=[1] FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA01788.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTPPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTPRANNQPWVATLIPSQSAGPPQRSSEPKRLTGRNSRNQR" FT CDS <3461..4810 FT /codon_start=1 FT /product="ORF5" FT /db_xref="GOA:Q65877" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q65877" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA01789.1" FT /translation="VDSSTSEPQPAPEPTPTPQPTPAPQPAPEPTPAPVPKRFFEYIGT FT PTGTISTRENSDSISVSKLGGQSMQYIENEKCETKVIDSFWSTNNNVSAQAAFVYPVPE FT GSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNSSGDNWGVGNYKGCSFKNFLATNTW FT RPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGTDACFYLMAPKTMKTDKYNYVVSYG FT GYTNKRMEFGTISVTCDESDVEAERITRHAETPIRFKHILVSEQYEQPLPTIIDQCLCD FT VQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATAEIPDAEEDVLPSKEQLSSKPVDTS FT GNKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLREAAKTPSTLLYEKTPKKSNNFLTR FT FVEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRKSLGLTAAKEYKAQFQ" FT CDS 4917..5105 FT /codon_start=1 FT /product="ORF6" FT /db_xref="GOA:Q65878" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q65878" FT /protein_id="BAA01790.1" FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPPPSPPFFCLSKN FT LSVCARETQKYRGASAQ" XX SQ Sequence 5179 BP; 1538 A; 1245 C; 1253 G; 1143 T; 0 other; gtgaagattg accatctcac aaaagctgtt acgctgcttg taacacacta cacactcgtt 60 ttgtgttcga gaagtagttg caacaacggt ccccttattg cctgacaagc tgagggccac 120 ccttctatcc ccaccgccaa catgtttttc gaaatactta taggagctag cgctaaggcg 180 gtcaaagact tcatcagcca ttgttactct cgtttgaaat ctatatatta ttctttcaaa 240 cgatggctga tggagatatc tgggcagttt aaggcccacg acgcctttgt caacatgtgc 300 ttcgggcaca tggctgacat tgaggacttc gaggcagagc tcgctgagga gtttgccgag 360 agggaggatg aggtggaaga ggcaaggagc ctcttgaaac tgctggttgc ccaaaaatct 420 aaaactgggg taaccgaggc ttggaccgac ttctttacga agtcgagagg tggcgtctat 480 gcgccacttt cctgcgagcc taccaggcag gagctagaag ctaagagcga gaagctcgaa 540 aagcttctag aagaacagca ccaattcgag gtgcgagcgg ccaagaaata cattaaggaa 600 aaaggccgcg gcttcatcaa ctgttggaac gacttgcgaa gtcgtctcag gctggtgaag 660 gacgtcaagg acgaggcgaa ggacaacgcc agagctgctg ccaagatcgg agcagaaatg 720 ttcgcccccg ttgacgtgca agacctctac agtttcacag aggtcaagaa ggtggagacc 780 ggcctcatga aggaggtcgt gaaagagaga aacggcgaag aagagaaaca cctcgagccc 840 atcatggaag aggtgagatc tatcaaggac accgctgaag ctagggacgc cgcctccact 900 tggataacag agacagttaa gctgaagaat tctacgctta atgccgatga attgtctctg 960 gccaccatcg cccgctacgt cgaaaacgta ggggacaaat tcaaactcga cattgctagc 1020 aagacatatc taaagcaagt cgcatcgatg tctgtaccaa ttccaactaa caaggacatc 1080 aaattgaaga tggtgctgca gagtcctgaa gcacgtgcca ggcgggaacc gttggacgtg 1140 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc 1200 ctattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt aaggttagta 1260 gtaatattag ataccttagc caaacccacc taggtcttgt atataaggca ccaaatgcct 1320 ccctgcacaa tgcgcttgta gcagtggaga gaagagtttt cacagtagga aagggggaca 1380 aagcaatcta ccccccccgc ccagagcatg acattttcac tgatacaatg gattacttcc 1440 aaaaatccat tatagaagag gtgggatact gtagaacata tccagcgcaa ctcctggcta 1500 acagctatag cgcaggaaag agagccatgt atcacaaagc cattgcatca ttgaggactg 1560 tcccttatca tcagaaggat gctaatgtgc aagctttcct gaagaaggaa aaacactgga 1620 tgaccaagga catcgccccc cgattgattt gcccccgcag caagcggtac aacatcatcc 1680 taggaactcg tttgaaattc aacgagaaga agatcatgca cgctatcgat agtgtgttcg 1740 gatcccccac tgtgctttct ggctatgaca actttaaaca aggaagaatc atagccaaga 1800 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1860 acgtgtcaga gcaggcgctt aagtgggaac acgggatata caatgggatc ttcggagaca 1920 gcgaactggc tcttgcactt gaacatcaaa tcaccaacaa catcaagatg tttgttgaag 1980 ataaaatgct taggttcaag gtaaggggcc acagaatgtc cggtgacatt aataccagca 2040 tgggaaataa gctcataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg 2100 aagctgaact ttgtaacaac ggagacgact gtgtcatcat cactgataga gccaatgaga 2160 agctctttga tggcatgtac gaccatttcc tccagtatgg cttcaacatg gtgaccgaaa 2220 aaccagttta cgaactggag caattggagt tttgccagtc aaaaccggtc tctattaatg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agatagcaca acactactga 2340 gcatgctcaa tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggcctgg 2400 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat agaagctcgg 2460 ggtacaagaa agtgagtgag gaatttatta aaaacgtcat atcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tataatgaaa cacctatcac aaaccacagt agaatgtcct 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat cgtcgagagg tactacgacg 2640 gtcttacggt aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa 2700 tactactttc cataccggaa aaccactcac aaatcgaata ttaattacca gatcttagct 2760 gggtttggga tagggtttat agttagtata ccctgtacat tagctctcgc gtactttatt 2820 tacaataaag tttcagacac cactagagag gtggtgaatg aattcagtag gccgtagagg 2880 acctagacgc gcaaatcaaa atggcacaag aaggaggcgc cgtagaacag ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag 3000 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg tattctcagt 3060 cgacaacctt aaagccaact cctccggggc aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tacttaagtc ctaccaccgt tacaagatca caagtatccg 3180 tgttgagttt aagtcacacg cgtccgcaac tacggccggc gctatcttta ttgaactcga 3240 caccgcgtgc aaacaatcag ccctgggtag ctacattaat tccttcacaa tcagcaggac 3300 cgccgcaaag gtcttcagag ccgaagcgat taacgggaag gaattccagg aatcaacgat 3360 agaccagttt tggatgctct acaaggccaa tggaaccacc actgacacgg caggacaatt 3420 cattatcacg atgagtgtca gtttgatgac ggccaaatag gtagactcct caacatcgga 3480 accgcaacct gcaccagaac ctacaccaac cccacagcca acgccagctc cacagcccgc 3540 acccgaaccg actcctgcac ctgtccccaa aagattcttt gagtatatcg gcactccaac 3600 cggtacaatc tcaacaagag agaactctga cagtatttct gtcagcaagc tcggtgggca 3660 gtcgatgcag tatatagaga atgagaagtg tgaaacaaag gtcattgact ccttctggag 3720 cactaacaac aacgtgtctg cacaggcagc cttcgtttac ccagtgccag aaggatcata 3780 cagtgtgaac atttcgtgcg aaggctttca atccgttgac cacataggag gcaacgagga 3840 tggttattgg attggtttaa ttgcctactc caattcgtca ggagacaatt ggggggtagg 3900 caactacaaa ggatgcagtt tcaagaactt cttggcaacc aacacttgga gaccaggcca 3960 taaggatctc aagttgaatg attgccagtt cacagatgga caaatagttg agagggatgc 4020 cgtgatgtct ttccatgtag aagcaacagg tactgacgcc tgtttctatc tcatggctcc 4080 caaaacaatg aaaactgaca aatacaacta tgttgtctca tatggagggt acacaaacaa 4140 acggatggaa tttggtacca tatctgtgac ctgtgatgaa tccgatgttg aggcagaacg 4200 cataacaagg catgctgaaa cacccatacg tttcaaacac attcttgtgt ccgaacagta 4260 tgagcaacct ctacccacca taatcgatca atgcttgtgt gatgtgcaaa ctcccgagca 4320 agaacaaaca ctggtggatg aagaagacaa acagactgtt tccacagaac ctgatatagc 4380 actcatggag tatgaagctg caacagccga aattccagat gctgaagagg atgttttgcc 4440 ctccaaggaa cagttgtctt ctaaaccggt ggacacgtcc ggcaacaaaa tacctaagcc 4500 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg aagacgtgcc 4560 accaattgcg cggcaaaaac tacgtgaagc cgcaaaaaca ccctccacac tactctacga 4620 gaaaactccc aagaagagca acaatttctt gactcgtttt gtggaggcga ataggtcccc 4680 tacaactcca gctgccccaa cagtgtcaac tgtatcaaac atgacaaggg aacagcttgc 4740 ggagtacact agaattagga aatcccttgg actcacagca gcgaaggaat acaaggcgca 4800 atttcagtga aggtaacacc actagcacaa atcggatcct gggaaacagg cagaactacg 4860 gttcgtaagc tcgggtaggc cgtcaaccta ccgccgtatc gtattgtgtt tggccgatgg 4920 atgacctcca cgttatcgcc gtttgtattt ttgctctaac tgtgctgaca gggttaggcg 4980 cggtgatcgg ctgttgtgcc ggttgccttc tccctccccc ctcccctccg ttcttctgtt 5040 taagcaaaaa tctctcggtc tgtgcgagag aaactcaaaa atatcgggga gcttcggctc 5100 agtgagggga ttaacgaccc ccagtaaagg ctggtcttgg cggacttgaa taacccgcta 5160 taagacgaag tggtaaccg 5179 //