ID D11028; SV 1; linear; genomic RNA; STD; VRL; 5273 BP. XX AC D11028; D01213; XX DT 07-MAY-1992 (Rel. 31, Created) DT 24-JAN-2024 (Rel. 144, Last updated, Version 12) XX DE Barley yellow dwarf virus MAV genomic RNA, complete sequence. XX KW . XX OS Barley yellow dwarf virus MAV OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; OC Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; OC Luteovirus mavhordei. XX RN [1] RX PUBMED; 2273382. RA Vincent J.R., Ueng P.P., Lister R.M., Larkins B.A.; RT "Nucleotide sequences of coat protein genes for three isolates of barley RT yellow dwarf virus and their relationships to other luteovirus coat protein RT sequences"; RL J. Gen. Virol. 71:2791-2799(1990). XX RN [2] RX PUBMED; 1538199. RA Ueng P.P., Vincent J.R., Kawata E.E., Lei C., Lister R.M., Larkins B.A.; RT "Nucleotide sequence analysis of the genomes of the MAV-PS1 and P-PAV RT isolates of barley yellow dwarf virus"; RL J. Gen. Virol. 73:487-492(1992). XX DR MD5; 920644388ebb48cf3267c09a48d8007f. DR EuropePMC; PMC112095; 10846080. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5273 FT /organism="Barley yellow dwarf virus MAV" FT /isolate="P-PAV" FT /serotype="MAV" FT /mol_type="genomic RNA" FT /db_xref="taxon:2169984" FT CDS 106..1125 FT /codon_start=1 FT /product="ORF1" FT /db_xref="GOA:P29044" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/Swiss-Prot:P29044" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA01779.1" FT /translation="MFFEILIGASTKAVKDFISHCYSRLKSIYYCFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQDLEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETIKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS <1110..2708 FT /codon_start=1 FT /product="ORF2" FT /db_xref="GOA:Q65871" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q65871" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA01780.1" FT /translation="LCGFLEGLCTASGFESPFPILGLPEIAVTDGARLRKVSCNIRYLS FT QTHLGLVYKAPNASLHNALVAVERRVYTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIE FT EVGYCKTYPAQLLANSYSAGKRAMYHKAIASLRTIPYHQKDANVQAFLKKEKHWMTKDI FT APRLICPRSKRYNIILGTRLKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQK FT FACPVAIGVDASRFDQHVSEQALKWEHGIYNGVFGDSELALALEHQITNNIKMFVEDKM FT LRFKVRGHRMSGDINTSMGNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKL FT FDGMYDHFLRYGFNMVTEKPVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLS FT MLNQSDVKSYMSAVAQCGLVLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDE FT RLQGRRTFQDTPITNHSRMSYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQ FT SILLSIPENHSHNEY" FT CDS 2822..3421 FT /codon_start=1 FT /product="viral coat protein" FT /note="ORF3" FT /db_xref="GOA:Q00010" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/Swiss-Prot:Q00010" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA01781.1" FT /translation="MNSVGRRNNRRRNGPRRARRVSAVRRMVVVQPNRAGPKRRARRRT FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHLYKIT FT NVKVEFKSHASASTVGAMFIELDTWCSQSTLGSYINSFTISKSATKTFTAQQIDGKEFR FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK" FT CDS 2859..3323 FT /codon_start=1 FT /product="ORF4" FT /db_xref="GOA:P29046" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/Swiss-Prot:P29046" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA01782.1" FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNDELVDAQEEEGQILYLDQQ FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTFTRSQTSRLSLSHTRPP FT LQSAQCLLNSTLGAHNQPWVATLTHSPSQNQQPKPSPPNRLTGRNSGRVR" FT CDS <3422..4795 FT /codon_start=1 FT /product="ORF5" FT /db_xref="GOA:Q65872" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q65872" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAA01783.1" FT /translation="VDSSTPEPSPQPQPEPKPDPQPTPEPRQKRFFEYVGTPYVVIQTR FT ESSDSIAVKAMNDQSFQYIENETSEQRTVKAWWNSNNSVQAQAAFIFPIPAGEYSVNIS FT CEGLQSVDHIGGNRDGYWIGLIAYQSQSGDYWGVGNYVGCDITNLLGTNTWRPGHEDLE FT LNSCKFTDGQIVERDAVISFHVKARGADPKFYLMAPKTMKADKYNYVVSYGGYTDKRME FT FGTISVTVDESDVEAERYSRHTSTVRRTENRDYGWMNVLPPYNPDQVPEQEDEQPVVDK FT EMDAGSPIDTASLTSDTEAEKAFDLKEEELTRAILEYEAATVSIPDAAPDILPSKSEMS FT SKPIDRDGRSLPKSQTKEVLGTYQGQNITSDDVPPVIAEKLREVNRAPSTLLYDRQPKQ FT PKNPLTRFVLSNKTSTASPGSQSSTAGMTREQASEYTRIRKSLGLTAAKQYKASLDDT" FT CDS 4905..5036 FT /codon_start=1 FT /product="ORF6" FT /db_xref="GOA:Q65873" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q65873" FT /protein_id="BAA01784.1" FT /translation="MDDLHVIAVCVLSTTVFAGFVLTIGAAASLCGCVYSTVYNTKV" XX SQ Sequence 5273 BP; 1578 A; 1243 C; 1275 G; 1177 T; 0 other; cttgtaacac actacacact cgttttgtat tcgagaagta gttgcaacaa cggtcccctt 60 attgcctgac tagctgaggg ccacccttct atccccaccg ccatcatgtt cttcgaaata 120 ctcataggag ctagcactaa ggcggttaaa gacttcatca gtcattgtta ctctcgtttg 180 aaatctatat attattgttt caaacgatgg ctgatggaga tatctgggca gtttaaggcc 240 catgacgcct ttgtcaacat gtgcttcggg catatggctg acattgagga cttcgaggca 300 gagctcgctg aggagtttgc cgagagggag gatgaggtgg aagaggcaag gagcctcttg 360 aaactgctgg ttgcccaaaa atctaaaact ggggtgaccg aggcttggac cgacttcttt 420 acgaagtcga gaggtggcgt ctacgcgcca ctttcctgtg agcctaccag gcaggaccta 480 gaagtcaaga gcgagaagct cgaaaaactt ctagaagaac agcaccaatt tgaggtgcga 540 gcggccaaga aatacatcaa ggaaaagggc cgcggcttca tcaactgttg gaacgacttg 600 agaagtcgtc tcaggctggt gaaggacgtc aaggacgagg cgaaggacaa tgccagagct 660 gctgccaaaa tcggagcaga aatgttcgcc cccgttgacg tgcaggacct ctacagcttt 720 acagaggtca aaaaggtgga gaccggcctc atgaaggagg tcgtaaaaga gagaaacggc 780 gaagaagaga aacacctcga gcccatcatg gaagaggtga gatctatcaa ggataccgcc 840 gaagccaggg atgccgcctc cacctggatt acagagacaa ttaagctgaa gaactcaacg 900 cttaacgcag atgaattgtc tctagccacc atcgcccgct acgttgaaaa cgtaggggac 960 aaattcaaac tcgacattgc tagcaagaca tatttaaagc aagtcgcatc gatgtctgtg 1020 ccaattccaa ccaacaagga catcaaattg aagatggtgc tgcagagtcc tgaagcacgt 1080 gccaggcggg aacgcatgga cgtgcttgac tctgtgggtt tttagagggg ctctgtaccg 1140 cctctggttt tgagagccca ttccccattc tcgggctgcc agagattgcg gtcacagacg 1200 gagcccgact ccgtaaggtt agttgtaata ttagatacct tagccaaacc cacctaggtc 1260 ttgtatataa ggcaccaaat gcctccctgc acaatgcgct tgtagcagtg gagagaagag 1320 tttacacagt aggaaagggg gataaggcaa tctacccccc ccgcccagag catgacattt 1380 tcactgatac aatggattac tttcagaaat ccattataga agaggtggga tactgtaaga 1440 catacccagc gcaactcctg gctaacagct atagcgcagg aaagcgggcc atgtatcaca 1500 aagctattgc atcattgaga actatccctt accatcagaa ggatgccaat gtgcaagctt 1560 tcctgaagaa ggaaaaacac tggatgacca aggacatcgc cccccgattg atttgccccc 1620 gcagcaagcg gtacaacatc atcctaggaa ctcgtttgaa attcaacgag aagaagatca 1680 tgcacgctat cgatagtgtg ttcggatccc ccactgtgct ttctggctat gacaacttta 1740 aacaaggaag aatcatagcc aagaagtggc aaaagtttgc atgccccgtc gccatcggcg 1800 tggatgctag ccgctttgac caacacgtgt cagagcaggc gcttaagtgg gaacacggga 1860 tatataatgg ggtctttgga gacagcgaac tggctcttgc acttgaacat caaatcacca 1920 acaacatcaa gatgtttgtt gaagataaaa tgcttagatt caaggtaaga ggccacagaa 1980 tgtccggtga cattaacacc agcatgggaa ataagctcat aatgtgcggc atgatgcatg 2040 cctatttcaa gaagctgggt gttgaagctg aactttgtaa caacggagac gactgtgtca 2100 tcatcactga tagagccaat gagaagctct ttgatggcat gtacgaccat ttcctccggt 2160 atggcttcaa catggtgacc gaaaaaccag tctacgaact ggagcaattg gagttttgcc 2220 agtcaaaacc ggtctctatt aatggaaagt atagaatggt cagaaggccc gatagcatag 2280 gcaaagatag cacaacacta ctgagcatgc tcaatcaatc cgacgttaaa agctacatgt 2340 cggccgtggc tcagtgcggc ttggtgctca acgctggggt acccatactt gagagcttct 2400 acaaatgcct atacagaagc tctgggtaca agaaagtgag tgaggaattc atcaaaaacg 2460 tcatttcgta tggaacggat gagagactac aaggtagacg taccttccaa gacacaccta 2520 tcaccaatca tagtaggatg tcctactggg aatcattcgg agttgaccct aagatacaac 2580 aaattgtcga gcggtactac gacaatctta cggtaagtgc ccaactccag agtgtgaagg 2640 tgactactcc acatctgcaa tcaatactac tttccatacc ggaaaaccac tcacataacg 2700 aatattaatt accagatttt agctgggttt ggaatagggt ttatagcgtc tataccctgt 2760 acattagctc tcacgtattt tatttacaat aaagtttcag acactactag agaggtagtg 2820 aatgaattca gtaggccgta gaaacaaccg caggaggaat ggcccaagga gagcaaggcg 2880 cgttagcgca gttcggagaa tggttgtggt ccaacccaat cgagccggac caaaacgacg 2940 agctcgtcga cgcacaagag gaggaggggc aaatcttata tctggaccag caggcaggac 3000 tgaggtattc gtattctcag tcaacgacct taaggccaac tcctcaggga caatcaagtt 3060 cggtcccgac ctttcgcaat gcccagcgct ttcaggtgga atactcaagt cctaccacct 3120 ttacaagatc acaaacgtca aggttgagtt taagtcacac gcgtccgcct ctacagtcgg 3180 cgcaatgttt attgaactcg acacttggtg ctcacaatca accttgggta gctacattaa 3240 ctcattcacc atctcaaaat cagcaaccaa aaccttcacc gcccaacaga ttgacgggaa 3300 ggaattcagg gagagtacgg tgaaccaatt ttacatgcta tacaaggcga atggtagtac 3360 atctgatacc gccgggcaat tcatcattac aatacgcgtt gccaacatga ctcccaaata 3420 ggtagactcc tcaacaccag aaccttcgcc acaaccccag ccagagccca aacctgatcc 3480 gcagccaaca ccagagcctc gacagaaacg gtttttcgag tacgtaggaa cgccctatgt 3540 tgtcatacaa actagggaga gttcggatag cattgccgtt aaggcgatga atgatcaatc 3600 ttttcagtac atcgaaaatg aaacttcgga gcaaagaacc gtcaaggcat ggtggaactc 3660 caacaacagt gtccaagcgc aagcagcatt tatatttcct atacccgctg gtgagtacag 3720 cgtgaatatc tcttgcgaag gtctacaatc tgtggaccac attggaggaa acagagacgg 3780 atattggata ggcttgatag cctaccaaag ccaaagtggg gactactggg gcgtaggtaa 3840 ctatgtcggc tgtgatataa caaatcttct aggaacaaac acttggcgtc caggccatga 3900 agatttggaa ttaaacagct gtaaattcac agatggacaa atagttgaaa gagatgctgt 3960 gatatctttc catgtcaaag ctaggggtgc tgatcccaag ttttacctca tggcacctaa 4020 aaccatgaag gctgacaaat acaactatgt tgtgtcgtat ggagggtaca cagataaaag 4080 aatggaattt ggaaccatat ctgtcactgt ggatgaatct gatgttgagg cagaacgcta 4140 tagcaggcac acgagcacgg tcaggagaac agagaaccga gattacgggt ggatgaatgt 4200 gctcccaccc tacaatcctg accaagtacc agagcaggaa gatgaacaac cagtggttga 4260 taaggaaatg gatgccggat cccctatcga caccgcatcg ttgacctctg atactgaggc 4320 tgagaaagcc tttgacttga aggaagaaga acttactagg gccattcttg aatacgaggc 4380 agccactgta tcaatacctg atgctgcccc ggatatcttg ccctctaaat ctgagatgag 4440 cagcaaacca atagaccgag atgggaggtc tttaccaaaa tctcagacaa aggaagtcct 4500 tggcacttac caaggccaga acatcacttc tgatgatgtt cctcctgtca tagctgaaaa 4560 attgcgtgaa gtaaacagag caccatctac tctgctttac gacaggcagc caaaacaacc 4620 taaaaatcct cttacccgtt tcgtattatc taataagact agcacggctt cccctggctc 4680 ccagtcttcc actgctggaa tgacgagaga acaagcatct gaatacacca ggattaggaa 4740 gtctttgggc ctaacagcag caaaacaata caaagcaagc ctcgatgaca catagtgaag 4800 atcaacacca ctcgcaaata cggatcctgg gaaacaggca gaacttcggt tcgtaagctc 4860 gggtaaacta gtcctttacc gccgtatcgt actttgtgtg gccgatggat gatctacatg 4920 tgatagcggt ttgcgtgctg tccacgacag tgttcgcagg ctttgtgttg acaatagggg 4980 ccgcagctag tctctgtggg tgtgtttatt caacagtcta taacacaaag gtctaatctg 5040 tgatacgacc aaccaaaaat aaacggggaa cctcgggttc agcgagaggg ctaacgaccc 5100 tcagtaattg gctggttctg ggagacatga ataccctcct atagaacgaa gtggaactcc 5160 accactgatc aaatcgggaa acatgcttct gtgttgtaca ctgccccgga gcccaccggg 5220 ttaacaaggc tattccacca gctcgatgaa atgagagtgg agtgaacggc cgg 5273 //