ID D10949; SV 1; linear; genomic RNA; STD; VRL; 3945 BP. XX AC D10949; XX DT 05-NOV-1992 (Rel. 33, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 8) XX DE Barley mild mosaic virus gene for polyprotein precursor, partial cds. XX KW . XX OS Barley mild mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-3945 RA Kashiwazaki S.; RT ; RL Submitted (15-APR-1992) to the INSDC. RL Satoshi Kashiwazaki, Scottish Crop Research Institute, Virology Department; RL Invergowrie, Dundee DD2 5DA, United Kingdom (E-mail:mail@scri.sari.ac.uk, RL Tel:44-382-562731(ex.2125), Fax:44-382-562426) XX RN [2] RX PUBMED; 1402809. RA Kashiwazaki S., Nomura K., Kuroda H., Ito K., Hibino H.; RT "Sequence analysis of the 3'-terminal halves of RNA 1 of two strains of RT barley mild mosaic virus"; RL J. Gen. Virol. 73:2173-2181(1992). XX DR MD5; 029b71010440e0d0eee9b59c3e74dd60. XX CC Sequence updated (08-Jan-1996) by: Satoshi Kashiwazaki XX FH Key Location/Qualifiers FH FT source 1..3945 FT /organism="Barley mild mosaic virus" FT /strain="Ka1" FT /mol_type="genomic RNA" FT /note="clones Ka1SK11 and Ka1SK46" FT /db_xref="taxon:12466" FT CDS <1..3608 FT /codon_start=3 FT /product="polyprotein precursor" FT /note="capsid protein, possible polymerase and proteinase" FT /db_xref="GOA:O39510" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:O39510" FT /citation=[2] FT /protein_id="BAA01742.1" FT /translation="MVAALLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDE FT VRNKINKKFKERSTRFSNNSKPETSSKYRNLKQEFVNFYNLKTDANVLQAVFTAMDGAV FT LLQTENPMADIGHVNRLLQDHFEDSESQAVHEGLNTMVKCHLTMKDGRQFELDMEQHDP FT ETVAKLGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGMTMKPMSSFTIDSAKMVG FT FIKTAKDTLNCILYGDWIIAPAHTQQGEGDITFIFQHVQFTTTTERLASYGIRQFKGLD FT LVVIRRPQQIRAVKKDMRASILDTPTEIQMLYLSTKGGKYQVSTSAVCFPHYNNRWGHV FT ISTAEGMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPW FT IFDWKFCGYTTKPRNMQSAPSTLERLNINATGFGFKLDAQEIKPAMLRSTESFSREFPD FT TQFKLIGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKD FT LKKYDRPPHANVFCQDTLTKAKHKMISILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLY FT HGKKIDIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFT FT AAPITSLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPGWTHGSGD FT GSRFDSSIDGFLFDVIKDIRKHFMDTEHHKELDTIYEEIVNTKICLANGLVIQKNCGNN FT SGQPSTVVDNTLALMTAFLYAYARLTGDHAFELMDENFVFVCNGDDNKFSMSPSFMAKF FT GCDFSPFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRA FT GGVLHAYLSGIAALFESFNTPKLFNLVHTYLLWLVTEHEEELFSMMELKDMFMPLPTRE FT QIALLHYVGTEPIVEETFLQAGHEEPDPIVPPVPDTDLTNMAAAPPDNRKSRAVIPRGT FT SDWSLPEPKMRTLGFKSKINIETLANVPDGYMNTFASVATESQRRKWEEAARGDFGITD FT DEKWEKLLIAACIYFADNGTSPNFDEELTMEVNGGLNSIKEYPVRPFVVRAKKISTLRR FT IFRCYSIETKLMFVKLRRVPHWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAI FT GVGTSNSLLTSEQTNMRTTETRRRNDYDGHEALLR" FT 3'UTR 3606..3945 FT regulatory 3860..3864 FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 3945 BP; 1110 A; 1060 C; 891 G; 884 T; 0 other; ttatggttgc cgccttactc atgtatctcg ttttctgggt ttctcccagg aaacaggacg 60 acatcaccat tgaggggaaa ggcagggcat acaaccgtga caagcgcatg gggtacgact 120 cctacgagga agacgaagtt cgcaacaaga tcaacaaaaa gttcaaagag cgcagcacaa 180 ggttctccaa taactccaag ccggaaacaa gctcgaaata ccgcaatctg aagcaagaat 240 ttgttaactt ctataatctc aaaaccgatg cgaacgtgct acaagccgtg ttcactgcaa 300 tggacggggc cgtccttctt caaaccgaaa atccaatggc agacattggc catgtcaata 360 gactgctgca ggaccacttt gaagacagtg agagccaagc tgtgcatgag ggcctcaaca 420 ccatggtcaa gtgccaccta actatgaaag atggaagaca gtttgagctc gacatggaac 480 aacacgatcc cgaaactgtc gccaaacttg ggggcgaggt tggtttcaga atgaacagag 540 acgacttacg tcaagttgga gccacacgat acatcaaccc aagagcacaa acatctgcag 600 cgacgctcga aggcatgacc atgaaaccca tgagttcttt caccattgac agcgcaaaga 660 tggttggctt catcaagacc gcaaaagaca cactcaactg catcctttac ggcgactgga 720 ttatagctcc tgcgcacaca cagcagggcg agggggacat aacattcatc ttccagcacg 780 tacaattcac gaccacaact gagcgtttag ctagctatgg cattcgacaa ttcaaaggtc 840 ttgaccttgt tgtcatccgg cgccctcagc agatacgcgc agtcaagaag gacatgcgtg 900 ctagcattct cgacacaccc actgaaatac aaatgctcta cttgtccact aaaggtggta 960 agtaccaagt gtccacgtcc gctgtgtgct ttccacacta caataaccga tggggacacg 1020 tcatttcaac agcagaaggc atgtgcggct gtattgtatt caaccccacc acgaaccaca 1080 tcgttggaat ccacgtctcc tacaacgaca cgcgcagaag aaatgagttt caagctttca 1140 caagtgacgt tctgacaacg attaatgcac ccggacacga gatacctttc agcccatgga 1200 tcttcgactg gaagttttgt gggtacacaa caaaaccacg aaacatgcaa agcgcaccga 1260 gcacactcga gcgactcaac atcaatgcca caggatttgg tttcaagctc gatgcacagg 1320 agattaagcc agccatgctt cgttccacag agtcgttctc cagggagttt ccagacacac 1380 agtttaaact cattggggaa gtgaagaaag gactcatcga caaacacaca atcacaggag 1440 agaacccata cttccttgaa ttcctgaaca cattcaaacc ataccaatgg gtgcaggcct 1500 tcatggacga gtacgcaccc tccatccttg cctatgacgc gtatttcaaa gatctgaaga 1560 aatatgatag gccaccacac gcaaatgttt tctgtcagga cacactaacc aaagctaaac 1620 ataagatgat cagcatcctc gaggaagcag gcatgggaag gaccctagta cgaaccaccg 1680 agcaggtctt gcttgacatg gcgtggacca cctccggtgg acccttgtac catggtaaga 1740 agatcgacat tgtgcaacac ttgtctgacg acgagcttgt acagttcagt gaggcctgcc 1800 aacaggctct tatcactgga acgctggatg gagtctggaa cggatcactc aaagccgagc 1860 tgcgctcttc gcagaaaatc ctcgaacgga aaacccgcgt ttttactgct gcacccataa 1920 caagcctcat tgcgatgaaa tactatgtgg atgatttcaa caaacagttc tataaaaccc 1980 atctcaaagc accgcacaca gtcggaatca acaagttcaa ccgcggatgg cagaatctgt 2040 atgagaagct caacaaaccc ggatggacgc atgggagtgg ggacggttcc aggtttgaca 2100 gttccattga tggattcctt ttcgatgtca tcaaggacat tcgaaagcat ttcatggaca 2160 cggaacacca caaagaactc gacacaatct acgaagagat agtcaacacg aagatatgtc 2220 tggcgaacgg cctggtcatt cagaagaatt gcgggaacaa cagtgggcag ccaagcactg 2280 ttgtggacaa cacactcgca ctcatgacag cttttctcta cgcatatgcc cggctcactg 2340 gagatcacgc cttcgaactc atggacgaaa acttcgtctt cgtctgcaat ggtgatgaca 2400 acaagttttc catgtcacct agcttcatgg cgaagtttgg atgcgatttc tccccattcc 2460 tctctgagct cgggctaacc tacgaatttg atgaagcaac tgaagatatc tgcgaaaacc 2520 cctacatgtc cttgacgatg gtccgcacct cgtttgggat tggtttctct ctctccattg 2580 agcgcatcgt tgcaatcttg cagtggagtc gcgccggtgg agtcctgcat gcctatctct 2640 ctggcattgc cgctcttttc gaatctttca acacacccaa actcttcaat ctcgtgcaca 2700 catatctcct ttggctcgtc acagagcacg aggaggaact cttctccatg atggaactca 2760 aagacatgtt catgcccttg cccactaggg aacagatagc cttgctgcac tacgttggaa 2820 ctgagcccat cgtggaggaa acatttctgc aagcaggaca cgaagaacca gaccccatcg 2880 ttcccccagt tcctgacacc gatctaacga acatggctgc cgcaccaccc gacaacagaa 2940 agtcgcgcgc cgtcatcccc cgtgggacca gtgactggag cctgcctgaa cccaaaatgc 3000 gaacactggg tttcaagtcc aagatcaaca tcgaaacact tgccaatgtc cccgacgggt 3060 atatgaacac ctttgcatcc gttgcaactg aatcgcaacg taggaaatgg gaggaggccg 3120 cacgtggcga tttcggcatc actgacgatg agaaatggga gaagttgctc attgctgctt 3180 gtatatattt cgcagacaat ggcacctcac cgaatttcga cgaggaactc actatggagg 3240 ttaatggcgg tctcaactcc atcaaagagt accccgttcg cccctttgtc gttagagcca 3300 aaaagatttc cacgctgcgc agaatctttc gctgttactc catcgaaacg aagctcatgt 3360 tcgtgaagct gaggcgcgtg ccacactggg ccataaagca cggatgcctc gatgagatcg 3420 tctttgattt catgatcccc gaccagttca cctctaggac tgcgcttgaa acactgaagc 3480 agaccaaact ggctgccatt ggtgttggca caagcaattc tctcctcacc tccgagcaga 3540 cgaacatgag gaccactgaa acccgacggc gcaatgacta cgatggtcac gaggcgctcc 3600 tccggtagat ctctcatgca cttgcatttc cttttaagca atgcatttca atacgctttt 3660 aattatatca agcgtcaaga atttctcccg cttgcagtta atccttatag ggtggcactt 3720 tgtgttatgc aatggaaaat tcagtgacgc aatcaaccat cattggttgg tgacaacgca 3780 gtactttctt tatttcacat caagcgacca gcacatcgcc cgcttacagc taatcctacc 3840 tgagggtggc actctgtgtt atgtaatgga atgtgcaatc tcgcaaccaa ccgtcattgg 3900 ttgatggtgc ggccaacacc cgcactcttg tataccggaa aggtt 3945 //