Dbfetch
ID D10774; SV 1; circular; genomic DNA; STD; VRL; 8002 BP. XX AC D10774; D01028; D01149; D10236; XX DT 15-AUG-1992 (Rel. 33, Created) DT 30-MAR-2006 (Rel. 87, Last updated, Version 8) XX DE Rice tungro bacilliform virus DNA, complete genome. XX KW . XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RP 1-8002 RA Omura T.; RT ; RL Submitted (03-SEP-1991) to the INSDC. RL Toshihiro Omura, National Agricultural Research Center, Laboratory of RL Virology; Kannondai 3-1-1, Tsukuba, Ibaraki 305-8666, Japan RL (E-mail:toomura@affrc.go.jp, Tel:81-29-838-8932, Fax:81-29-838-8929) XX RN [2] RP 1-8002 RX DOI; 10.1007/BF01314633. RX PUBMED; 1571015. RA Kano H., Koizumi M., Noda H., Hibino H., Ishikawa K., Omura T., RA Cabauatan P.Q., Koganezawa H.; RT "Nucleotide sequence of capsid protein gene of rice tungro bacilliform RT virus"; RL Arch. Virol. 124(1-2):157-163(1992). XX DR MD5; 9cdcd8c025cfbfeb6d742b4ba52548e4. XX FH Key Location/Qualifiers FH FT source 1..8002 FT /organism="Rice tungro bacilliform virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:10654" FT tRNA 1..19 FT /product="tRNA-Met" FT CDS <69..668 FT /codon_start=1 FT /product="24K polypeptide" FT /db_xref="UniProtKB/TrEMBL:Q86365" FT /protein_id="BAA01605.1" FT /translation="VPKRDLISQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYC FT YFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKP FT TKKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPKEVE FT LRTLKIAEQNSKAIEKFEQEIKDLRGILEYLKHQAT" FT CDS 665..997 FT /codon_start=1 FT /product="12K polypeptide" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/TrEMBL:Q77RL9" FT /protein_id="BAA01606.1" FT /translation="MSADYPTFKEALEKFKNLESDTAGKDKFNWVFTLENIKSAADVNL FT ASKGLVQLYALQEIDKKINNLTTQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI FT KRKYPA" FT CDS 994..6021 FT /codon_start=1 FT /product="194K polypeptide" FT /db_xref="GOA:Q86366" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q86366" FT /protein_id="BAA01607.1" FT /translation="MNIRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVE FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQGGESLR FT FSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELREVIQQLEREKQ FT AMIAKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE FT TEEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNFERI FT GSTYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI FT TGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKRVTN FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKTCET FT QYCKTCSDQLALEVTEVKKPTKEETMISDLKLNVKNLEFRVTILEHKVEMQNLQDKFET FT MQIRNKSEITEIPTTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALIDSG FT STHNIICPTLIPASWINTTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIKYK FT LGQTYVAPQPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFARKH FT GGRPPLFSNIPEIYNKIPQLHSYQPQPILGYKNEIGNQSLLTMVKELEALGFIGDDITK FT NRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAA FT FIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGF FT HHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDI FT LIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIV FT NKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWN FT IIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYAS FT GNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSKTR FT WIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKYLQNPDSTESYSIDSSESI FT PLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA" FT regulatory 1950..1955 FT /regulatory_class="CAAT_signal" FT regulatory 2612..2617 FT /regulatory_class="CAAT_signal" FT regulatory 3859..3865 FT /regulatory_class="TATA_box" FT regulatory 4237..4243 FT /regulatory_class="TATA_box" FT CDS 6042..7211 FT /codon_start=1 FT /product="46K polypeptide" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/TrEMBL:Q86367" FT /protein_id="BAA01608.1" FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDHL FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLNDQVSLLQKQNSELRARIATN FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIETNTTESLLSLSQKKGEDLLQKGVVIFN FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWDNMVDED FT EGEIVYISKYTKIIKVTKEHAWAWPEHDGDTMSCTTSIEDEWIHRMDNA" FT regulatory 6278..6284 FT /regulatory_class="enhancer" FT regulatory 7151..7156 FT /regulatory_class="CAAT_signal" FT regulatory 7373..7379 FT /regulatory_class="TATA_box" FT regulatory 7598..7603 FT /regulatory_class="polyA_signal_sequence" FT regulatory 7881..7887 FT /regulatory_class="enhancer" XX SQ Sequence 8002 BP; 3271 A; 1244 C; 1440 G; 2047 T; 0 other; tggtatcaga gcgatgttcg aactttaagg gaaaaataga atacaatcta gtcaaactaa 60 ttacataagt tccgaagagg gatcttattt ctcaaaatat tgagtcacgt tacgaaaaac 120 ttgaattctt agacttagca gtctggggaa aagagaaaaa acaaaaatat ttactatcta 180 ccgataatat tagcttttat tgttactttg atactagtaa aactagtgaa tcagaaagaa 240 agcatacctt tcattctgat aataagcaac tcaatagtat tgtagacctt attattaagc 300 attctgaaaa aaccaaaaat attaaggaag aattagaaaa atatagtcag ttcctagata 360 agattttaga tctaaagcct actaaaaaac aagtcgaaaa actattagaa aatcaaaact 420 taattagcaa gaactttgat tatatcaaag aacaaaacac tcaactagaa aaatccctaa 480 gaaaaacagt taagttagaa gactccatta atactctatt agtagaaata caacaagcta 540 gacctaagga agtagaatta agaactctta agatagcaga acaaaactct aaagcaatag 600 aaaaatttga gcaagaaatt aaggatctaa gaggaatctt agaatacctt aagcatcaag 660 ctacatgagc gctgattatc caactttcaa ggaagccctt gaaaagttta aaaacctaga 720 atcagataca gccggaaaag ataagtttaa ttgggtattt actctagaaa atataaagtc 780 agctgcggac gtaaatttag catctaaggg tttagtacaa ctttatgctt tacaagaaat 840 tgataaaaag attaataatc ttacaaccca agttagtaag ttacctacaa ctagtggaag 900 tagttcagca ggagctatag tacctgcagg tagtaacacc caaggtcagt acaaagcacc 960 acctaagaaa ggaattaaga gaaaatatcc agcatgaata ttagaccatt tactggtact 1020 tctagaacta taacccaaga ttcaacctct gaatctaata taaaaaaggg aaaaaactca 1080 acaaaaagag aattaataga agaagtagat gttaatcaag aagtagaaaa ctttgattgg 1140 aaaaaactat caggaattaa acctaataaa ctatatgaga aaaattggca agaaaaagtt 1200 aagttaaaac aacaatctat agtttcagca tataaagaag aagctattag tgtaactcat 1260 aatgcatata ctactacttt atttccacaa gaagtaatta aaaatgttaa gaatcaggga 1320 aaactttatt atcatatagg catgatggcc ataggagtta aaggacttca tagaagaaaa 1380 ataggaacta aagtcatgat aatgttttat gatgatagtt tcggtaaagc tagggaagct 1440 agcattggat cgatagaaat ggatatgaac gccggttgtg gagtgttcta ctcctgccct 1500 gactttgcaa aatatattaa agatttatca caccttaaga tagggataca aaccctagga 1560 tatgaaaatt atgaaggaaa aaacctttcg gtagcaatca aaactatagg aagattgacc 1620 accaatatac agtcaaaata taagataaat gtgaaagata ttgtagaaca gatatcatca 1680 caaggaatca ttatggtagc acccatggaa atagattcat cacacctaga tgggaatgaa 1740 tgggatctta gtaaattctt aaaccatgaa aacacaagta gagtcccaac caaagcccta 1800 atatatcaga atctacaagg aggagaatcc ttaagatttt caaattataa gcaaactaga 1860 atgcatgatc ctactgaaaa caattcagat gaagatgaag atttaaaaat cttaggagaa 1920 caactaaata ttaaaatggc aagattttac acaatgcaaa ccccagaaga agaattacga 1980 gaagtaattc aacaattaga aagagaaaaa caagccatga tagcaaaact agaagctaaa 2040 atgaaagagt catctaaaat ggcaatagta gaagataatt tcaatccaaa taacgaatat 2100 ctagaagata catattctga atatgaagat ctagaattcg agaaattagg attaactgga 2160 tgggaagact tagatcagga ttccatagaa accgaagaaa taactgaatg ggaaaatcct 2220 aatcaagtac ttcatagaga aattagagca tataaatcag tatctgaaca aatagaagat 2280 atatttggag aactattaaa agaacacgga aactatgata tggcccttaa aaacctagaa 2340 gaaaaatacg acttagataa aatagaaaag gccaaatcta tagaagaaat agctaaatca 2400 tctacatcat cagaaattag gccaaccaaa agacctaaag aagaacaaac agcctatgaa 2460 gatgatatga gagatgattg gaaaagaaaa gaattaacag taaatcctat agaagcctca 2520 aaagatagaa attttgaaag aataggaagt acatataaga aaaactttta ccctagtaga 2580 agtgaaatat taaacttaga taacgttccc ccacaatttt actatgacca gctagtaacc 2640 tgggaaggaa tagttaaaaa tgaatgggaa gcacgtaaga aagatgggat ggatatgtgg 2700 tcttggatgg atggtagaat aacaggatta gtgttatatt tagtccaaga ttggatatct 2760 aaaaatcagg cagcctataa tgatataaaa tctagaggtg atagacctga aaacttcgta 2820 aaaatggtaa aagataggtt cttaatagaa gatcctacag atgaaagaag aacagcatta 2880 caaaggttag cacaaagaga attagaagcc ttaaactgcg aagatcctac taaaattcaa 2940 ccatttatgg ctgaatatct taagaaagca tcagaagcca aaaaaggatt tgatgtagtt 3000 tatgtagaaa gactctttga tagactacca gaagcagtag gaaaggtagt aaaagcggac 3060 tttgtcaaag acggtaattc ctatgaagca ggaataggaa tagcagtttc atatatatct 3120 acatggatga gagcaaaatg cattaaggaa acagaagcta aaactcaaaa gaaagcatcc 3180 ttagcattct gtagatccat atatactata ggagattata agaaacgaaa aatcctaaaa 3240 agagttacaa actataataa aaataggaga aaaaactatg tcagaagacc tagcattaag 3300 aaaaaatgca gatgttatat ctgtcaagat gaaaaccacc tagctaatag atgtcctaga 3360 agatatacta atcaggctag agcaagtcta atagatggat tagacgaaga tatagtatct 3420 atagcatcag atgacgagga tattgaaaat ttccttgaaa taatagaact tgatgaattt 3480 atagcacatt ctagtcaaga acatgaacat acatgggaaa tcggaggaaa gaaagataag 3540 gtatgtgaaa tttgcagtta ttttacggat tataataaaa ctgttagctg caaaacctgt 3600 gaaacccaat actgcaaaac atgttctgat caactagcac tagaagtaac agaagtcaaa 3660 aaacctacaa aagaagaaac aatgataagc gacctaaaat taaatgttaa aaatctagaa 3720 tttagagtca ccattctaga acataaggta gaaatgcaga atcttcaaga taaattcgaa 3780 actatgcaaa ttagaaataa atcagaaata acagaaatac caacaacctc attagctatg 3840 agagcaaatg aatcaaatta tataaaaaca tcaattaata aaactgcagg atgttatgta 3900 gaaacaaaaa tttcatttaa caatgaaaac agaatcataa cagccctaat agactcagga 3960 tcaacacata atataatatg tccaacattg ataccagcat catggattaa tactacacat 4020 agagaaatta taatgtttgc tgtagataat agcaaatata atctgaatca agaattaata 4080 gatgatatca aattacaatt ccaagaagtt gatgaaactt ttggaataaa atataaatta 4140 ggacaaacct atgtagcacc tcagccaaca aaaacattta taataggaca cagattcctt 4200 acaaatgaaa atggtagtgt tacaatccat aaagattata taactataca aaaaactaca 4260 ggaatatacc caacagccag acacgaactt aaatcagagt ttgcgcgaaa gcatggtgga 4320 cgcccgccat tattttcaaa cattcctgaa atctataaca aaattcctca gttgcattca 4380 tatcagcctc aaccaatatt aggatataag aatgaaatag gaaatcaaag tttactcact 4440 atggtgaaag aattagaagc acttggattc ataggagatg acattactaa aaacagaaca 4500 acgtgggtat gtgacttcaa aatcataaac ccagatatta atataacttg tgcaacaatt 4560 ccatacacac cagcagataa agaagtattt gaaaaacaaa ttaaagaact actagataat 4620 aagttaatca agaaagctga tccaacatgc aggcatagaa cagcagcatt tatagtaaga 4680 aaccattctg aagaagtagc tcagaaacct cgaatagtct ataactataa acgtttgaat 4740 gataatatgc atacagatcc ttttaatatt cctcataaga tttcaatgat taatctaata 4800 cagaaagcta atatattttc taagtttgat ttaaaagcag gatttcatca tatgaaatta 4860 aaagatgatt tcaaagattg gactactttt acatgctcag aaggattata tacttggaac 4920 gtctgtccat ttggtatagc taacgcccct tgtgcatttc aaagatttat gcaggaatcc 4980 tttggagatt taaagtttgc attattatat atagatgaca tacttattgc atctaataac 5040 gaaaaagagc atatagaaca tcttaagatt ttctttaata gagtaaaaga agtaggatgt 5100 gttcttagta agaaaaaatc aaaaatgttt cttaaagaag tagaatatct tggagtagaa 5160 attaaagaag gaaagattag tcttcagccg catatagtta ataagatcaa aaaatttgat 5220 aaaaataaac tcaacaccct aaagggacta caagcatatc tagggttact caattatgcc 5280 agaggataca tcaaagacct atcaaagcta gtaggaccac tttataaaaa gacaggaaaa 5340 aatgggcaaa gaatctttaa caaagaagat tggaatatca tctttaagat agaaagagag 5400 gtatcaaaga taaagccttt agaaagacct aaagaaaccg actacatcat tatagagaca 5460 gatgcgtcag aagaaggctg gggagcagtc ttagtctgta agccagataa atatagtggc 5520 aaggacactg agaaaatagc agggtatgca tcaggaaact ttggagagaa gaaaacctgg 5580 actagtttag attatgaaat agaagctata aatgaagccc taaacaagtt ccagatatac 5640 ttagacaaag attttacaat cagaactgat tgtgaagcaa tagtgaaagg gataaaaaca 5700 gaagattata aaaagagatc aaaaaccaga tggattaagt taagagataa cctcttaaaa 5760 gatggataca agcctacctt tgagcatatc aagggaaaca aaaacttttt accaaacttc 5820 ttatcccgtg agggagattt tattttaaaa tatcttcaaa accccgattc tacggaatca 5880 tattctatag attcgtcaga atcaattcca ctatatatcg attcaaaaga atcacattct 5940 atagagtctg atgactcaat tccactatac agggacaagc ttcttcctct agtcgaaagg 6000 ctaaaggaaa agagtgccta actaaggtcg gaggcatcac catgaatata gagtacccgt 6060 actcaatcca cataatagac aagaacaagg ttccgatcta cgatcaagga aatctcttcc 6120 acactgagaa gtctgcaaga ctttcacatg tgtccagagg tttgctggat catctcttta 6180 ctttttcgtc tgataatact gagcgagtta ggaagctcca catattagcc gattatcttt 6240 acctattaga aagtgagaga gagtcatata aaaatgagtg gattagcttg aatgatcaag 6300 ttagtcttct acaaaaacaa aatagtgagt tgagagctag gatagccacc aacaaagaaa 6360 taatagaggg actgagagag ccagttaaaa agccaatata cacaacccag gataaagaga 6420 ggctccgtgt tttcttttgc gaagaaagaa gcatggaata tatatattat catataaaaa 6480 ggctagctca gcagagctat tattcccacc taaataaatt acagaaggat tgtgaaccct 6540 ttcgaggggt ctacatgtct ttcttaacta atgttaaatt cctagtatta tgtgaagctg 6600 gatactggac tgtaccagat atagaaacta atactacaga gtctttatta agtctatccc 6660 agaagaaagg agaagatctt ctacaaaagg gagtagtaat atttaatgag cttgaaggag 6720 gatatcagct ttctccaaga ttcattggag acctttatgc tcatggtttt attaaacaaa 6780 taaacttcac aaccaaggtt cctgaagggc taccgccaat catagcggaa aaacttcaag 6840 actataagtt tcccggatca aataccgtct taatagaacg agagattcct cgctggaact 6900 tcaatgaaat gaaaagagaa acacagatga ggaccaactt atatatcttc aagaattatc 6960 gctgtttcta tggctattca ccattaaggc catacgaacc tataactcct gaagaatttg 7020 ggtttgatta ctacagttgg gataatatgg ttgatgaaga cgaaggagaa attgtataca 7080 tctccaagta tactaagatt atcaaagtca ctaaagagca tgcatgggct tggccagaac 7140 atgatggaga cacaatgtcc tgcaccacat caatagaaga tgaatggatc catcgtatgg 7200 acaatgctta aagaagcttt atctaaagca actttaagta cgaatcaata aagaaggacc 7260 agaagatata aagcgggaac atcttcacat gctaccacat ggctagcatc tttactttag 7320 catctctatt attgtaagag tgtgtaatga ccagtgtgcc cctggactcc agtatataag 7380 gagcaccaga gtattgtaat agatcatcga tcaagcaagc gagagctcaa acttctaaga 7440 gagcaagaga ggagcttatc ctctcaaccc ctcttcaaga agcaaaggcg atcaatggct 7500 caggtcagtg agtagtcgtc tttaaggttc ctctaggaac ctctgtgtaa tatgtttgta 7560 cttatgattg tatttctcaa aacctatccg ctgcatgaat aaagctctta tatttatcct 7620 acacccttgt gataaaacat gaagtcatac tcgttctaag attaagtgtt ctaaaaaata 7680 cttcgaagca ttgaaaaggg ggctaaaggg ggaaaaagta ccgtcaggcc gtgttatggc 7740 aagggaagaa gtaccatgaa taccctatag atgttagaag gaagataaga actaagtatc 7800 ttatgaacaa tgggtagctg atttctgatt atcattaaca agtaccgtta taatccataa 7860 gctttgaaag atctgctagt gtggatacca aaaggctgtc gtggttcgcc cagtcgacgg 7920 atgaggtcat aaacgaagca ctagtaggta actaagaggc ttagggatga gcaacgagaa 7980 aagttagggg ggtgcctaga aa 8002 //