ID D10539; SV 1; linear; genomic RNA; STD; VRL; 2215 BP. XX AC D10539; XX DT 19-JUN-1992 (Rel. 32, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 4) XX DE Cucumber mosaic virus genomic RNA, segment RNA 3, complete sequence, DE strain: M. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2215 RA Shintaku M.; RT ; RL Submitted (20-FEB-1992) to the INSDC. RL Michael Shintaku, The Samuel Roberts Noble Foundation, Molecular Virology; RL P O Box 2180, Ardmore, Oklahoma 73402, U.S.A. RL (E-mail:MSHINTAKU@AARDVARK.UCS.UOKNOR.EDU, Tel:1-405-223-5810, RL Fax:1-52-783-0719) XX RN [2] RX PUBMED; 2230731. RA Owen J., Shintaku M., Aeschleman P., Tahar S., Palukaitis P.; RT "Nucleotide sequence and evolutionary relationships of cucumber mosaic RT virus (CMV) strains: CMV RNA 3"; RL J. Gen. Virol. 71:2243-2249(1990). XX DR MD5; 3f7286b71d2bba9ea0032965c9435c3a. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC112760; 10400773. DR EuropePMC; PMC3550734; 23637513. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2215 FT /organism="Cucumber mosaic virus" FT /segment="RNA 3" FT /strain="M" FT /mol_type="genomic RNA" FT /db_xref="taxon:12305" FT CDS 121..960 FT /codon_start=1 FT /gene="3a" FT /product="3a protein" FT /db_xref="GOA:Q00272" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/Swiss-Prot:Q00272" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="BAA01398.1" FT /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK FT SQLNNIESSQYLLTNVKINQNARSESEDLNVESPPAAIGRFSASRSEAFRPQVVNGL" FT misc_feature 959..1256 FT /note="M-CMV RNA3 intercistronic region" FT /experiment="experimental evidence, no additional details FT recorded" FT CDS 1257..1913 FT /codon_start=1 FT /gene="CP" FT /product="capsid protein" FT /function="CMV RNA encapsidation" FT /note="coat protein or capsid protein gene" FT /db_xref="GOA:Q00260" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="UniProtKB/Swiss-Prot:Q00260" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="BAA01399.1" FT /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNKT FT LAAGRPTINHPTFVGSERCRPGYTFTSITLRPPKIDRGSYYGKRLLLPDSVTEYDKKLV FT SRVQIRVNPLPKFDSTVWVTVRKVLASSDLSVAAISAMFADGASPVLVYQYAASGVQTN FT NKLLCDLSAMRADIGDMRKYAILVYSKDDALETDELVLHVDIEHQRIPTSRVLPV" XX SQ Sequence 2215 BP; 520 A; 515 C; 526 G; 654 T; 0 other; gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgag tcgtgttgtc cgcacatttg 60 agtcgtgctg tccgcacata ttttatcttt atgtgtacag tgtgttagat ttcccgaggc 120 atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac 180 gatcttcaaa agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac 240 ctaggccggc atcattggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc 300 gaagtaaccc acggtcgtat tgcttccttc tttaagtctg gatatgatgt tggtgaatta 360 tgctcaaaag gatacatgag tgtccctcaa gtgttatgtg ctgttactcg aacagtttcc 420 actgatgctg aagggtcttt gagaatttac ttagctgatc taggcgacaa ggagttatct 480 cccatagatg ggcaatgcgt ttcgttacat aaccatgatc ttcccgcttt ggtgtctttc 540 caaccgacgt atgattgtcc tatggaaaca gttgggaatc gtaagcggtg ttttgctgtc 600 gttatcgaaa gacatggtta cattgggtat accggtacca cagctagcgt gtgtagtaat 660 tggcaagcaa ggttttcatc taagaataac aactacactc atatcgcagc tgggaagact 720 ctagtactgc ctttcaacag attagctgag caaacaaaac cgtcagctgt tgctcgcctg 780 ttgaagtcgc aattgaacaa cattgaatct tcgcaatatt tgttaacgaa cgtgaagatt 840 aatcaaaatg cgcgcagtga gtccgaggat ttaaatgttg agagccctcc cgccgcaatc 900 gggagatttt ccgcgtcccg ctccgaagcc ttcagaccgc aggtggttaa cggtctttag 960 cactttggtg cgtattagta tataagtatt tgtgagtctg tacataatac tatatctata 1020 gtgtcctgtg tgagttgata cagtagacat ctgtgacgcg atgccgtgtt gagaaggaac 1080 acatctggtt ttagtaagcc tacatcatag ttttgaggtt caattcctct tactccctgt 1140 tgagcccctt actttctcat ggatgcttct ccgcgagatt gcgttattgt ctactgacta 1200 tatagagagt gtgtgtgctg tgttttctct tttgtgtcgt agaattgagt cgagtcatgg 1260 ataaatctga atcaaccagt gctggtcgta accgtcgacg tcgtccgcgt cgtggttccc 1320 gctccgcctc ctcctccgcg gatgctaact ttagagtctt gtcgcagcag ctttcgcgac 1380 ttaataagac gttggcagct ggtcgtccaa ctattaacca cccaaccttt gtagggagtg 1440 aacgctgtag acctgggtac acgttcacat ctattaccct aaggccacca aaaatagacc 1500 gtgggtctta ttacggtaaa aggttgttac tacctgattc agtcacggaa tatgataaga 1560 agcttgtttc gcgcgttcaa attcgagtta atcctttgcc gaaatttgat tctaccgtgt 1620 gggtgacagt ccgtaaagtt cttgcctcct cggacttatc cgttgccgcc atctctgcta 1680 tgttcgcgga cggagcctca ccggtactgg tttatcaata tgccgcatct ggagtccaaa 1740 ccaacaataa attgttgtgt gatctttcgg cgatgcgcgc tgatataggt gacatgagaa 1800 agtacgccat cctcgtgtat tcaaaagacg atgcgctcga gacggatgag ctagtacttc 1860 atgttgacat cgagcaccaa cgcattccca catctagagt gctcccagtc tgattccgtg 1920 ttccagaatc ctccctccga tctctgtggc gggagctgag ttggcagttc tgctataaac 1980 tgtctgaagt cactaaacgt tttttacggt gaacgggttg tccatccagc ttacggctaa 2040 aatggtcagt cgtggagaaa tccacgccag cagatttaca aatctctgag gcgcctttga 2100 aaccatctcc taggtttctt cggaaggact tcggtccgtg tacctctagc acaacgtgct 2160 agtttcaggg tacgggtgcc cccccacttt cgtgggggcc tccaaaagga gacca 2215 //