ID D10538; SV 1; linear; genomic RNA; STD; VRL; 2216 BP. XX AC D10538; XX DT 19-JUN-1992 (Rel. 32, Created) DT 01-NOV-2007 (Rel. 93, Last updated, Version 5) XX DE Cucumber mosaic virus genomic RNA, segment RNA 3, complete sequence, DE strain: Fny. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2216 RA Shintaku M.; RT ; RL Submitted (20-FEB-1992) to the INSDC. RL Michael Shintaku, The Samuel Roberts Noble Foundation, Molecular Virology; RL P O Box 2180, Ardmore, Oklahoma 73402, U.S.A. RL (E-mail:MSHINTAKU@AARDVARK.UCS.UOKNOR.EDU, Tel:1-405-223-5810, RL Fax:1-52-783-0719) XX RN [2] RX PUBMED; 2230731. RA Owen J., Shintaku M., Aeschleman P., Tahar S., Palukaitis P.; RT "Nucleotide sequence and evolutionary relationships of cucumber mosaic RT virus (CMV) strains: CMV RNA 3"; RL J. Gen. Virol. 71:2243-2249(1990). XX DR MD5; 633abdf4e0f438ce2c909217f2d691e3. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC112760; 10400773. DR EuropePMC; PMC136033; 11884564. DR EuropePMC; PMC136502; 12208954. DR EuropePMC; PMC136969; 12163595. DR EuropePMC; PMC1781478; 17257060. DR EuropePMC; PMC2593348; 18842732. DR EuropePMC; PMC3273002; 22156418. DR EuropePMC; PMC3550809; 23730005. DR EuropePMC; PMC416521; 15163757. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2216 FT /organism="Cucumber mosaic virus" FT /segment="RNA 3" FT /strain="Fny" FT /mol_type="genomic RNA" FT /db_xref="taxon:12305" FT CDS 120..959 FT /codon_start=1 FT /gene="3a" FT /product="3a protein" FT /db_xref="GOA:Q00271" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/Swiss-Prot:Q00271" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="BAA01396.1" FT /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK FT SQLNNIESSQYLLTNAKINQNARSESEDLNVESPPAAIGSSSASRSEAFRPQVVNGL" FT misc_feature 960..1256 FT /note="Fny-CMV RNA3 intercistronic region" FT /experiment="experimental evidence, no additional details FT recorded" FT CDS 1257..1913 FT /codon_start=1 FT /gene="CP" FT /product="capsid protein" FT /function="CMV RNA encapsidation" FT /db_xref="GOA:P69466" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="PDB:1F15" FT /db_xref="UniProtKB/Swiss-Prot:P69466" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="BAA01397.1" FT /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT FT LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV" XX SQ Sequence 2216 BP; 517 A; 525 C; 528 G; 646 T; 0 other; gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgag tcgtgttgtc cgcacatttg 60 agtcgtgctg tccgcacata ttttatcttt tgggtacagt gtgttagatt tcccgaggca 120 tggctttcca aggtaccagt aggactttaa ctcaacagtc ctcagcggct acgtctgacg 180 atcttcaaaa gatattattt agccctgaag ccattaagaa aatggctact gagtgtgacc 240 taggccggca tcattggatg cgcgctgata atgctatttc agtccggccc ctcgttcccg 300 aagtaaccca cggtcgtatt gcttccttct ttaagtctgg atatgatgtt ggtgaattat 360 gctcaaaagg atacatgagt gtccctcaag tgttatgtgc tgttactcga acagtttcca 420 ctgatgctga agggtctttg agaatttact tagctgatct gggcgacaag gagttatctc 480 ccatagatgg gcaatgcgtt tcgttacata accatgatct tcccgctttg gtgtctttcc 540 aaccgacgta tgattgtcct atggaaacag ttgggaatcg taagcggtgt tttgctgtcg 600 ttatcgaaag acatggttac attgggtata ccggtaccac agctagcgtg tgtagtaatt 660 ggcaagcaag gttttcatcc aagaataaca actacactca tatcgcagct gggaagactc 720 tagtactgcc tttcaacaga ttagctgagc aaacaaaacc gtcagctgtc gctcgcctgt 780 tgaagtcgca attgaacaac attgaatctt cgcaatattt gttaacgaat gcgaagatta 840 atcaaaatgc gcgcagtgag tccgaggatt taaatgttga gagccctccc gccgcaatcg 900 ggagttcttc cgcgtcccgc tccgaagcct tcagaccgca ggtggttaac ggtctttagc 960 actttggtgc gtattagtat ataagtattt gtgagtctgt acataatact atatctatag 1020 tgtcctgtgt gagttgatac agtagacatc tgtgacgcga tgccgtgttg agaagggaac 1080 acatctggtt ttagtaagcc tacatcatag ttttgaggtt caattcctct tactccctgt 1140 tgagcccctt actttctcat ggatgcttct ccgcgagatt gcgttattgt ctactgacta 1200 tatagagagt gtttgtgctg tgttttctct tttgtgtcgt agaattgagt cgagtcatgg 1260 acaaatctga atcaaccagt gctggtcgta accgtcgacg tcgtccgcgt cgtggttccc 1320 gctccgcccc ctcctccgcg gatgctaact ttagagtctt gtcgcagcag ctttcgcgac 1380 ttaataagac gttagcagct ggtcgtccaa ctattaacca cccaaccttt gtagggagtg 1440 aacgctgtag acctgggtac acgttcacat ctattaccct aaagccacca aaaatagacc 1500 gtgggtctta ttacggtaaa aggttgttac tacctgattc agtcacggaa tatgataaga 1560 agcttgtttc gcgcattcaa attcgagtta atcctttgcc gaaatttgat tctaccgtgt 1620 gggtgacagt ccgtaaagtt cctgcctcct cggacttatc cgttgccgcc atctctgcta 1680 tgttcgcgga cggagcctca ccggtactgg tttatcagta tgccgcatct ggagtccaag 1740 ccaacaacaa actgttgtat gatctttcgg cgatgcgcgc tgatataggt gacatgagaa 1800 agtacgccgt cctcgtgtat tcaaaagacg atgcgctcga gacggacgag ctagtacttc 1860 atgttgacat cgagcaccaa cgcattccca catctggagt gctcccagtc tgattccgtg 1920 ttcccagaat cctccctccg atctctgtgg cgggacgtga gttggcagtt ctgctataaa 1980 ctgtctgaag tcactaaacg ttttttacgg tgaacgggtt gtccatccag cttacggcta 2040 aaatggtcag tcgtggagaa atccacgcca gcagatttac aaatctctga ggcgcctttg 2100 aaaccatctc ctaggtttct tcggaaggac ttcggtccgt gtacctctag cacaacgtgc 2160 tagtttcagg gtacgggtgc ccccccactt tcgtgggggc ctccaaaagg agacca 2216 //