ID D10222; SV 1; linear; mRNA; STD; VRL; 4423 BP. XX AC D10222; XX DT 20-NOV-1992 (Rel. 34, Created) DT 01-MAR-2008 (Rel. 95, Last updated, Version 5) XX DE Rice dwarf virus mRNA for RNA-dependent RNA polymerase, complete cds. XX KW . XX OS Rice dwarf virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Phytoreovirus. XX RN [1] RP 1-4423 RA Suzuki N., Tanimura M., Watanabe Y., Kusano T., Kitagawa Y., Suda N., RA Kudo H., Uyeda I., Shikata E.; RT ; RL Submitted (06-JAN-1992) to the INSDC. RL Contact:Nobuhiro Suzuki Akita Prefectural College of Agriculture, RL Biotechnology Institute; 2-2 Minami, Ohgatamura, Minamiakita-gun, Akita RL 010-0444, Japan XX RN [2] RX DOI; 10.1016/0042-6822(92)91210-L. RX PUBMED; 1529532. RA Suzuki N., Tanimura M., Watanabe Y., Kusano T., Kitagawa Y., Suda N., RA Kudo H., Uyeda I., Shikata E.; RT "Molecular analysis of rice dwarf phytoreovirus segment S1: interviral RT homology of the putative RNA-dependent RNA polymerase between plant- and RT animal-infecting reoviruses"; RL Virology 190(1):240-247(1992). XX DR MD5; db7084e61e2c69fea2fd9184f3aca664. XX FH Key Location/Qualifiers FH FT source 1..4423 FT /organism="Rice dwarf virus" FT /segment="1" FT /isolate="H" FT /mol_type="mRNA" FT /clone_lib="RD" FT /clone="p1RDU" FT /db_xref="taxon:10991" FT misc_feature 1..6 FT /note="consensus sequence" FT misc_feature 33..39 FT /note="consensus eukaryotic initiator context" FT CDS 36..4370 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q02119" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR014383" FT /db_xref="UniProtKB/Swiss-Prot:Q02119" FT /protein_id="BAA01074.1" FT /translation="MDLARSDIVPHLLCLFQEIIQANIQKVSEAYDLELKIMNILTLWR FT NGSDNLISDNDDYMKKGLFFSRSNDPLALQARYAQMYDDLFKLNNYEVPDDVVRRHDTK FT ILDIILKESSVPFWYDISDDEAHESMLPEFRLQDIHEFRLNLKRVAVAPDESEEIQMDE FT SQSDKRRRKKRMEKSRPVWLSGSENDRRIELNDSLKPSQKFETKLSSYLLNRLMNEMNP FT HYVGHPLPALFVTLIMLKAYSIKNKFFSYGIRYMELVCNEIGGPDLNTRTFPVLFGRDG FT SFVGTRVYSHYPIKLRMILNDLTYLLTYSDLHKFQEFELDVSDEVLLHMLHSPNDGRQL FT KKAVTRLNLYYGLKFNPKTTDCGVVNGMDFTHKHPITKTADFTSPVLPMTNSFNKAEIC FT YGHSSKILNRAVFTDTVRGYIREDLKSVADLDLPKLHEHVSKLVDTRVNYTIIYDLMFL FT RVMLNLGGYSRSNQITDFRKTIDEITKMNEDFLSGADPEKNIDTLNAWMAPTMEDCGYR FT LTKSILFGKFRKAKYPSDLEAKSNIDYYVTARSAGIGNLRISIETDKRKYKVRTTSKSA FT FVNAMGSGILDVNPVSNEPMMLTDYLLTQTPETRANLEAAIDSGSISDSELMRILGQNS FT IGSRSTTAWRPVRPIYINVLQAHLAQAFIIGPHINATVNQHESQPTSLWFTGDDLGVGF FT ATLYQNGTADIIAPAIEASSTGKALSVLADCTSWDQTFLTATIIPYYNGIKRALLEYQQ FT ADMRNFYMIDSSRTGVPGMRLSEIVDWFNSFQTKRIFNASYLKERHSFVVKYMWSGRLD FT TFFMNSVQNALITRRIAEEVSLKVSNTGLSWFQVAGDDAIMVYDGSSISTTEQVTRVNE FT ITVRNYEESNHIINPQKTVISHISGEYAKIYYYAGMHFRDPSIQLHESEKDSGASDVTE FT SLRGFGQVIYEYNKRAIGTLRVNALYGRLIAGLAYSVNVRRYDASKRTYANMKYYPPPT FT SVIAPAAFKGGLGLSFTGLSLNEVLFIKMHLHEAVSQGLHVISMISFEANEVVSNSLSA FT YYLKDQKDLLRDMKLGKHLEKVKGISFKSSDLAFSGSDFSQGLNLKRESIDKVKLEVSR FT KSIRDLRSSGISVPSTHAYENLPYASLHQSFKSLKVDRDTSKFTNERLLVSLLEYKSDI FT PRVSVTSQYPVYDLINISKVDELNVRSGGPVRFISTPIEGKLLEENIGTRQGVQFKNRG FT YGGSQEVLHFIRSNGLVITEQALIDLIIKSGVLLMINPQRGLIDLFQSLSGDTASSMHL FT ANFFMAEKPHWEDNAISLTIAGSLLENCDSRIENVKNFVSVLATGMQRDLQRMFYYVGF FT VYYAQRLIWSGGHSSKIFVSIDEDKFADFLRGSKPITRRRKAMAGTKREPINLSANFSY FT EISEPDREISEYDPLVLCHPLSMPFFGNWQEKYSVMQSDEQM" FT misc_feature 4420..4423 FT /note="consensus sequence" XX SQ Sequence 4423 BP; 1314 A; 858 C; 1000 G; 1251 T; 0 other; ggcaaatgat cggctgtgcc tggacttcat tcgtcatgga tcttgcgagg tcggatatcg 60 ttccgcattt gctatgcctc ttccaagaga taatccaagc caacatccaa aaagtatctg 120 aggcgtacga tttggagttg aaaataatga acattttgac gttgtggcga aacggatccg 180 acaatctgat ttcagacaac gatgattaca tgaagaaggg attattcttc agtcggagta 240 atgatccctt agctttgcag gctcgttatg ctcaaatgta tgatgatctg tttaagctga 300 acaactatga agtgccagat gatgttgtgc gtaggcatga caccaagatt ttggacataa 360 tattaaaaga gtcttccgtg ccattttggt atgacatatc ggatgacgaa gctcatgaat 420 caatgctgcc tgaattcaga ctgcaagaca ttcatgagtt cagattgaat ttgaagcgcg 480 tagctgtagc acctgacgag tctgaagaga ttcagatgga tgaaagtcag agtgataagc 540 ggcgtcgcaa gaagaggatg gagaagagtc gccctgtgtg gctgtcggga tcggaaaacg 600 ataggcgcat agaactaaac gactctttga aacctagtca aaaatttgaa actaagttat 660 cgtcttatct attaaataga ttgatgaatg agatgaatcc tcattatgtt ggacatccgt 720 taccagcatt atttgttaca ctcataatgc taaaggctta ttctattaag aacaagttct 780 tttcgtatgg tataagatac atggagctcg tgtgtaatga gatcggcggt ccggatctca 840 atacccgaac gttcccagtt ttatttggac gtgacggttc attcgtgggc acacgagtat 900 actcgcacta tccaataaaa ctacgtatga tactgaacga cttaacttat ttattaacct 960 actcagacct tcataagttc caagagttcg agctagatgt aagcgatgaa gttttacttc 1020 atatgttgca cagcccgaat gatggaaggc aacttaagaa ggcggtgaca aggttaaatc 1080 tctattatgg attgaagttc aacccgaaga ccactgactg cggtgtggtt aatggaatgg 1140 atttcacgca caaacaccca atcactaaga ctgctgattt cacgtctcca gttttaccca 1200 tgactaattc tttcaataag gctgaaatat gttatgggca tagtagtaaa attttgaata 1260 gggctgtgtt tactgacact gtccgtggct acattcgtga ggatcttaag agtgtggccg 1320 acttagattt gccaaaacta catgagcatg tttcaaaatt ggtggatacg cgtgttaatt 1380 acacaattat ctatgatctc atgtttctac gagtcatgtt gaaccttggt ggttattcga 1440 ggtccaatca aatcactgac tttaggaaga ctattgatga gatcacaaaa atgaatgagg 1500 atttcttatc tggggcggat ccagaaaaga atattgacac attgaatgct tggatggcac 1560 ctacaatgga ggattgtggt tatcgactta ctaaatctat cttgtttggt aaatttagga 1620 aagccaaata cccatctgat ttggaggcta agtccaatat tgattattac gtgactgcca 1680 gatcggctgg gattggcaac ctacgtatat caatagaaac agataaaaga aagtacaaag 1740 tacggactac gtcgaagtcc gcctttgtta acgccatggg ttctggaata ctagacgtta 1800 atcccgtcag taatgaacct atgatgttaa ctgattactt gttaacgcaa actcccgaaa 1860 cgcgagcaaa cttagaggcg gctatagata gcggatctat atccgactct gagttaatgc 1920 gcatactagg gcagaacagc atcggctcac gttctaccac agcttggaga ccggtacgac 1980 cgatttacat aaatgtgttg caagcacatt tggcgcaggc cttcatcatc gggcctcaca 2040 taaatgcaac tgtcaatcag catgaatccc aacctacatc tctttggttc actggggatg 2100 atttgggggt tggttttgct acactgtatc aaaacggaac cgcggatata atcgctccag 2160 ctatcgaagc gtcctctact ggtaaagcgc tcagtgttct cgctgactgc acatcctggg 2220 atcagacgtt tctaacagcg acgattattc cgtactacaa tggaataaaa agagctttgc 2280 tagaatatca acaagcggat atgcgcaact tctatatgat agatagtagc agaactggcg 2340 tgccagggat gagactgtct gaaatagtag attggtttaa cagttttcaa accaagcgga 2400 tattcaatgc ctcctatttg aaagaaaggc attcatttgt ggttaaatat atgtggtcgg 2460 gacgactgga cactttcttt atgaattctg ttcagaatgc attgatcacg aggagaatag 2520 ctgaagaagt atccttgaag gtgtcaaaca ctggtttatc ctggtttcag gttgctggcg 2580 atgacgcaat catggtatac gatggatcat caatctccac aactgagcaa gtgaccagag 2640 ttaatgaaat cacagttcgt aattatgagg agtcaaatca cataattaat ccgcaaaaaa 2700 cagtgatttc acatatttct ggtgaatatg ctaaaatata ttattatgca ggaatgcatt 2760 ttcgtgatcc ctcaattcag ctgcatgaat ccgaaaagga ttctggagca agtgacgtca 2820 ccgagtcctt acgggggttt ggtcaggtca tatatgaata taacaaaaga gcgattggta 2880 ccctacgcgt gaacgcttta tatggcaggc taatagccgg gctggcgtat agtgtgaacg 2940 tccgcaggta tgacgcttca aaaagaacat atgcgaatat gaaatattat ccgccaccaa 3000 cctcagtaat tgctccagcc gcatttaagg gaggattggg attgtcattt actgggttat 3060 cgttgaatga ggtgctattt attaaaatgc atctccacga ggcggtatct cagggtcttc 3120 acgtgatttc aatgatttca tttgaagcca acgaagtcgt ttcaaactct ctgtccgcgt 3180 attatcttaa ggaccagaaa gatttactgc gtgacatgaa gttaggcaag catcttgaaa 3240 aagtcaaagg tatatccttt aagtcctctg atttagcctt ttcgggtagt gatttctcgc 3300 aagggctgaa cctaaagagg gaatctattg ataaagtgaa gctcgaagtg tctcgtaaat 3360 ctatccgtga tttgcgctct tcgggtatta gtgtgccatc aacgcacgca tatgaaaatt 3420 tgccatatgc atcattgcat cagtctttca aaagtctaaa agtggataga gacacttcga 3480 aatttacgaa tgaacggtta ctggtttcac tcctcgagta taaatcagac attccgagag 3540 taagtgtcac ctcgcagtat ccagtttatg acttgatcaa catctcaaaa gttgatgagt 3600 taaatgtcag atccggtgga ccagtcaggt tcatctctac cccaatagaa ggcaagctat 3660 tggaagaaaa tattggtacc cgtcaaggag ttcagtttaa aaatcgaggg tacggaggat 3720 ctcaagaagt attacacttc ataagatcca acggcttggt gataactgaa caagctctga 3780 ttgacttaat catcaagtca ggagtactgc taatgataaa tccacaacgt gggttgatcg 3840 acctttttca gtctctttct ggagataccg cttcatctat gcatctagcg aacttcttca 3900 tggctgaaaa accgcactgg gaagataatg ccatatctct caccattgcg gggtcgttgc 3960 ttgagaactg cgatagtaga attgagaacg taaagaactt tgttagcgtc cttgctactg 4020 gcatgcaaag ggacctacaa agaatgttct attacgtcgg atttgtctac tatgcacaga 4080 gacttatatg gtctggtggc cactccagta aaatattcgt ctctattgat gaggataagt 4140 tcgctgactt ccttagagga tctaaaccaa tcactcggag gaggaaagcc atggctggaa 4200 ctaagcgtga accgatcaat ttaagcgcta atttcagtta tgaaatatct gaaccggata 4260 gggagattag tgagtacgac ccgctagtct tatgtcatcc cctatcaatg ccattttttg 4320 gtaattggca ggagaaatac tctgtgatgc agagcgacga gcaaatgtga ttgatccgcc 4380 aggctatccg ttgggatagg ttaatcagcc gatcatatat gat 4423 //