ID D10066; SV 1; linear; genomic RNA; STD; VRL; 8897 BP. XX AC D10066; D01230; XX DT 06-APR-1992 (Rel. 31, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 5) XX DE Orthotospovirus tomatomaculae gene for RNA polymerase, complete cds. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RX PUBMED; 1895058. RA de Haan P., Kormelink R., de Oliveira Resende R., van Poelwijk F., RA Peters D., Goldbach R.; RT "Tomato spotted wilt virus L RNA encodes a putative RNA polymerase"; RL J Gen Virol 72(Pt 9):2207-2216(1991). XX DR MD5; 844d46d17d390ccfdf2199be5e5b942c. DR EuropePMC; PMC2725914; 17554814. DR EuropePMC; PMC3165796; 21715500. DR EuropePMC; PMC3838119; 24067954. DR EuropePMC; PMC4178757; 25100845. DR EuropePMC; PMC5552725; 28848524. XX CC Data kindly submitted in computer readable form by: Peter De Haan CC Department of Virology CC Agricultural University Wageningen CC Binnenhaven 11 CC 6709 PD Wageningen CC P.O.Box 8045 CC The Netherlands. XX FH Key Location/Qualifiers FH FT source 1..8897 FT /organism="Orthotospovirus tomatomaculae" FT /strain="BR-01 (CNPH1)" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052585" FT CDS 34..8661 FT /codon_start=1 FT /product="RNA polymerase" FT /db_xref="GOA:P28976" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR015841" FT /db_xref="UniProtKB/Swiss-Prot:P28976" FT /protein_id="BAA00955.1" FT /translation="MNIQKIQKLIENGTTLLLSIEDCVGSNHDLALDLHKRNSDEIPED FT VIINNNAKNYETMRELIVKITADGEGLNKGMATVDVKKLSEMVSLFEQKYLETELARHD FT IFGELISRHLRIKPKQRNEVEIEHALREYLDELNKKSCINKLSDDEFERINKEYVATNA FT TPDNYVIYKESKNSELCLIIYDWKISVDARTETKQWRNTYKNIWKSFKDIKVNGKPFLE FT EHPVFVSIVILKPIAGMPITVTSSRVLEKFEDSPSALHGERIKHAKNAKLLNISYVGQI FT VGTTPTVVRNYYANTQRIKSEVRGILGDDFGSKDVFFSHWTSKYKERNPTEIAYSEDIE FT RIIDSLVTDEIPREEIIHFLFGNFCFHIETMNDQHIADKFKGYQNSCINLKIEPKADLA FT DLKDHLIQKQQIWESLYGKHLEKIMLRIREKKRKEKEIPDITTAFNQNAAEYEERYPNC FT FNDLSELKLTFHDLVPSLKIELSSEVDYNNAIINKFRESFKSSSRVIYNSPYSSINNQT FT NKARDITNLVRLCLAELSCDTTKMEKQELEDEIDINTGSIKVERTKKSKEWNKQGSCLT FT RNKNEFCMKDTGRENKTTYFKGLAVMNIGMSSKKRILKKEEIKERISKGLEYDTSERQA FT DPNDDYSSIDMSSLTHMKKLIRHDNDDSLSGKRFKGSFFLLHNFNIIEDGKITSVFNNY FT AKNPECLYIQDSVLKTELETCKKINKLCNDLAIYHYSEDMMQFSKGLMVADRYMTKESF FT KILTTANTSMMLLAFKGDGMNTGGSGVPYIALHIVDEDMSDHFNICYTKEIYSYFRSGS FT NYIYIMRPQRLNQVRLLRLFKTPSKVPVCFPQFSKKANEIGKSLKNKDIEKVNLFSMTM FT TVKQILINIVFSSVMIGTVTKLSRMGIFDFMRYAGFLRLSDYSNIKEYIRDKSDPDITN FT CGRYLFRNGIKKLLFRMEDLNLSTNAKPVVVDHENDIIGGITNLNIKCPITGSTLLTLE FT DLYNNVYLAIYMMPKSLHNHVHNLTSLLNLPAEWELKFRKELGFNIFEDIYPKKAMFDD FT KDLFSINGALNVKALSDYYLGNIENVGLMRSEIENKEDFLSPCYKISTLKSSKKCSQSN FT IISTDEIIECLQDAKIQDIENWKGNNLAIIKGLIRTYNEEKNRLVEFFEDNCVNSLYLI FT EKLKEIISSGSITVGKSVTSKFIRNNHPLTVETYLKTKLYYRNNVTVLKSKKVSEELYD FT LVKQFHDMMEIDLDSVMNLGKGTEGKKLTFLQMLEFVMSKAKNVTGSVDFLVSVFEKMQ FT RTKTDREIYLMSMKVKMMLYFIEHTFKHVAQSDPSEAISISGDNKIRALSTLSLDTITS FT YNDILNKNSKKSRLAFLSADQSKWSASGLTTYKYVLAIILNPILTTGEASLMIECILMY FT VKLKKVCIPTDIFLNLRKAQQTFGENETAIGLLTKGLTTNTYPVSMNWLQGNLNYLSSV FT YHSCAMKAYHNTLECYKNCDFQTRWIVHSDDNATSLIASGEVDKMLTDFSSSSLPEMLF FT RSIEAHFKSFCITLNPKKSYASSSEVEFISERISKWSDYSSLLQAFSKLLHRIFAYKLF FT DDLMSLSIHVTMLLRKGCPNEVIPFAYGAVQVQALSIYSMLPGEVNDSIRIFNKLGVSL FT KSNEIPTNMGGWLTSPIEPLSILGPSSNDQIIYYNVIRDFLNKKSLEEVKDSVSSSSYL FT QMRFRELKEKYERGTLEEKDKKMIFLINLFEKASVSEDSDVLTIGMKFQTMLTQIIKLP FT NFINENALNKMSSYKDFSKLYPNLKKNEDLYKSTKNLKIDEDAVLEEDELYKKIASSLE FT MESVHDIMIKNPETILIAPLNDRDFLLSQLFMYTSPSKRNQLSNQSTEKLALDRVLRSK FT ARTFVNISSTVKMTYEENMEKKILEMLKFDLDSYCSFKTCVNLVIKDVNFSMLIPILDS FT AYPCESRKRDNYNFRWFQTERWIPVVEGSPGLVVMHAVYGSNYIENLGLKNIPLTDDSI FT NVLTSTFGTGLIMEDVKSLVNGKDSFETEAFSNSNECQRLVKACNYMIAAQNRLLAINT FT CFTRKSFPFYSKFNLGRGFISNTLALLSTIYSKEESYHFVSTASYKLDKTIRTVVSAQQ FT DMNLEKILDTAVYISDKLQSLFPTITREDIVLILQNVCLDSKPIWQSLEDKMKKINNST FT ASGFTVSNVILSHNSELNTIQKQIVWMWNMGLCSHRTLDFVIRYIRRRDVRYVKTEEQD FT ESGNYVSGTMYKIGIMTRSCYVELIASDQDVAVSLRTPFEILNEREYLFDTYRESIEKL FT LAEIMFDKVNIINQTTTDCFLRTRRSCIRMTTDNKMIVKVNATSRQIRLENVKLVVKIK FT YENVNSDVWDIIESQKSLVLRLPEVGEFFSDMYKTADSETETIKTIKNRLMTSLTFIEA FT FGNLSQQIKEIVDDDIRETMDEFLMNIRDTCLEGLENCKSVEEYDSYLDENGFNDTVEL FT FENLLRTHDNFENEYSPLFSEIVDKAKQYTRDLEGFKEILLMLKYSLINDASGFKSYRA FT TGMHAVELMAKKHIEIGEFNLLGMIQLIKACETCHNNDSILNLASLRNVLSRTYATFGR FT RIRLDHDLDLQNNLMEKSYDFKTLVLPEIKLSELSREILKENGFVISGENLKMDRSDEE FT FVGLASFNVLRLDEEEMYEGLIKEMKIKRKKKGFLFPANTLLLSELIKFLIGGIKGTSF FT DIETLLRNSFRPDIFSTDRLGRLSSSVPALKVYATVYMEYKNVNCPLNEIADSLEGYLK FT LTKSRSKEHFLSGRVKKALIQLRDEQSRTKKLEVYKDIANFLARHPLCLSEKTLYGRYT FT YSDINDYIMQTREIILSKISELDEVVETDEDNFLLSYLRGEEDAFDEDELDEEEDTD" XX SQ Sequence 8897 BP; 3362 A; 1294 C; 1692 G; 2549 T; 0 other; agagcaatca ggtaacaacg attttaagca aacatgaaca tccagaaaat acaaaaatta 60 atagaaaatg gaaccacttt actgttgtct attgaggatt gtgtaggttc taaccacgat 120 ctagctttgg atttacataa gagaaatagt gatgagatcc cagaagatgt gattataaat 180 aataatgcaa aaaattatga gacaatgaga gagttaattg tcaaaatcac tgctgatggt 240 gaaggactaa acaaagggat ggcaactgtg gatgtcaaaa agctaagtga gatggtctct 300 ctgtttgagc aaaaatacct agaaacagag ttagcaaggc atgacatttt tggagagctg 360 atctccaggc acctgagaat aaagcccaaa caaagaaatg aagtggagat agagcatgca 420 ctaagagaat atctggatga actcaacaaa aagtcctgca ttaacaagct ctctgatgat 480 gagtttgaga gaataaataa agaatatgta gcaactaatg ccacccctga taactatgtg 540 atatataaag aatcaaaaaa cagtgagctt tgtttaatca tttatgattg gaaaatatct 600 gtcgatgcca ggactgaaac caaacaatgg agaaatacct acaagaatat ttggaaatct 660 ttcaaagata taaaagtgaa tggaaagcca ttcctggaag agcatcctgt tttcgtttct 720 atagttatat tgaaacctat tgctgggatg ccaatcactg ttactagtag cagggttttg 780 gagaaattcg aagattctcc atcagcattg cacggagaaa gaataaagca tgctaaaaat 840 gccaaattgc taaatatttc ttatgttggg caaatagttg gaaccacacc cacagtggtg 900 agaaactatt atgcaaacac tcaaagaatc aaatctgaag tcagaggaat cttaggtgat 960 gattttggat ctaaagatgt gtttttcagt cactggacca gcaaatacaa agaaagaaat 1020 cctactgaga tagcctattc cgaagatatt gaaagaataa ttgattcact tgttacagat 1080 gaaatcccta gagaggaaat aatacatttt ttgtttggaa atttctgttt ccacattgaa 1140 acaatgaatg accagcatat agctgacaaa tttaaagggt accaaaactc ttgtatcaat 1200 ttaaaaatag agccaaaagc tgatttagct gatttgaaag accacttaat ccaaaagcag 1260 caaatatggg aatctctgta tggaaaacac cttgagaaga tcatgcttag aattagagaa 1320 aaaaagagaa aagaaaaaga gatacctgac ataaccacag cttttaacca gaatgctgct 1380 gaatatgaag aaaggtatcc taactgtttc aatgatctct ctgaactaaa actaactttc 1440 catgacttgg tccccagttt gaagatagaa ttgagctcag aggtagatta caacaacgca 1500 attattaaca agtttcggga gagcttcaaa agttcttcaa gggttattta taatagccca 1560 tatagtagca taaataacca aacaaataaa gcaagagata taacaaactt agttagactg 1620 tgtttagcag agctaagttg tgatacaacg aaaatggaaa agcaggaact tgaagatgaa 1680 atagatataa acaccgggag tatcaaagtt gagagaacaa aaaagtctaa agaatggaat 1740 aagcaaggtt cgtgtttaac cagaaacaaa aatgaatttt gcatgaaaga tacaggcagg 1800 gagaacaaaa ctacctattt taaaggctta gcagtaatga atataggaat gagttctaag 1860 aaaagaattc taaaaaaaga agaaataaaa gaaaggatct ctaaaggctt ggaatatgat 1920 acctctgaaa ggcaggctga cccaaatgat gattactcaa gtatagacat gtcttctctg 1980 actcatatga aaaaactgat aaggcatgac aatgatgata gcttaagtgg taaaagattt 2040 aagggctctt tttttctact tcataatttt aatataatag aggatggtaa gatcacatct 2100 gttttcaata attatgctaa aaatcctgaa tgcttgtaca ttcaagattc agtactgaag 2160 actgaattag agacttgcaa aaagataaac aaattatgca atgatctagc catttaccat 2220 tactctgaag acatgatgca attctccaaa ggtttaatgg tggctgacag gtacatgact 2280 aaagaaagtt tcaagatatt aaccacagca aatactagca tgatgctatt agcattcaaa 2340 ggggatggaa tgaacaccgg aggatcggga gttccttaca tagcattgca tatagtggat 2400 gaagacatgt cagatcattt taacatatgt tatactaaag aaatttatag ctatttccga 2460 agtggtagta attacattta tataatgagg ccgcagagac taaaccaggt gaggctgctg 2520 aggcttttca aaacgcctag taaagttcct gtatgttttc cacaattttc aaagaaagct 2580 aatgaaatcg gaaaatcgct gaaaaataaa gatatagaaa aagtaaatct cttttctatg 2640 acaatgactg taaaacagat attaataaat attgtgtttt catctgtcat gataggaact 2700 gtgacaaagc tcagtagaat gggaattttt gatttcatgc ggtatgcagg ttttttgcga 2760 ctatccgatt attctaacat aaaagaatac attagagaca aatctgatcc tgatataact 2820 aactgtggca gatatctatt tcgtaatgga atcaaaaaac tattgttcag aatggaagat 2880 ctcaatttaa gcacaaatgc caagcctgtt gttgtggacc acgaaaatga tattatagga 2940 gggataacaa acttgaatat aaaatgtcct ataacaggat caactctact gacacttgag 3000 gacctgtaca ataatgttta tttggctatt tatatgatgc ctaaatcact gcacaatcat 3060 gttcacaatc taacaagctt attaaatctc cctgctgagt gggagctaaa gttcagaaaa 3120 gaattaggtt tcaacatatt tgaagacata taccctaaga aagcaatgtt tgatgacaaa 3180 gacctattct ccataaatgg agctttgaac gtgaaagcat tatctgatta ctatctagga 3240 aatatagaaa atgttggttt aatgagatca gaaatagaaa ataaagaaga tttcctaagc 3300 ccttgttata aaatatctac tttaaaatct tcaaaaaaat gctcacaatc aaacattata 3360 agtactgatg agataataga gtgtcttcag gatgcaaaga ttcaagatat agaaaattgg 3420 aaaggaaata acctagctat tataaaaggg cttataagaa cctacaatga ggagaaaaat 3480 agattggtgg aattttttga agataattgt gtcaattcat tatatcttat agaaaagctt 3540 aaagagataa ttagtagtgg atcaataact gtagggaaat ctgtaacatc taaattcata 3600 agaaacaatc atcctttaac agtagaaaca tatctcaaaa caaaactata ttatagaaat 3660 aatgtaacag ttttaaagtc taaaaaagtg tcagaggagc tctatgacct tgtaaaacag 3720 ttccatgaca tgatggaaat agacctagat tctgttatga acctcgggaa aggtacagaa 3780 ggaaaaaaac tcacattctt gcagatgctt gaatttgtca tgtccaaggc taaaaatgtc 3840 accgggtctg tagattttct agtttctgtt tttgaaaaaa tgcagagaac caaaacagac 3900 agagaaatat acttgatgag catgaaagtg aaaatgatgc tttattttat agagcataca 3960 ttcaaacatg tagcgcagag tgatccatcg gaagccatat ctataagtgg agacaataaa 4020 ataagagcac tttctacgtt atctttggac acaatcacgt cttacaatga tattttaaac 4080 aaaaattcaa agaagtcaag attggctttc ctatctgcag atcagtcgaa atggtcggca 4140 tcaggcctta ccacctataa atatgtttta gctatcatat taaatccaat tttaactact 4200 ggtgaagcta gcttaatgat agaatgcatc ttaatgtatg ttaaattgaa gaaggtttgt 4260 ataccaacag atattttttt gaatctaaga aaagctcaac aaacttttgg ggaaaatgaa 4320 actgccatag gacttttgac caaaggcttg acgacaaaca cataccctgt tagcatgaat 4380 tggttgcaag gcaatttaaa ttatctgtct tctgtttatc actcttgtgc aatgaaagct 4440 tatcacaaca ctttggaatg ttacaaaaac tgtgatttcc aaactagatg gattgtgcac 4500 tctgatgata atgcaacatc attaatagcc agtggagagg ttgataaaat gctgacagac 4560 ttttcaagct catctctgcc agaaatgttg tttagaagca ttgaagctca tttcaaaagt 4620 ttttgcataa ctttgaaccc aaaaaagagt tatgcttctt catcagaagt agagtttata 4680 tctgaaagaa ttagtaaatg gagcgattat tcctctctat tgcaggcatt tagcaaactg 4740 ttgcacagaa tcttcgcata taagttattt gatgatctaa tgtcactcag tatacatgtt 4800 acaatgcttc tgagaaaagg ctgtcctaat gaagttatac cttttgctta tggggctgtg 4860 caggtacaag cgttaagcat ctattcaatg cttcctggtg aagtgaatga tagtattaga 4920 atttttaaca agcttggagt aagtttaaag tcaaacgaga ttcccacaaa catggggggc 4980 tggttgacct ctcctataga gccgttgtct atattaggtc catcatcaaa tgatcaaatc 5040 atctattaca atgtgataag agattttttg aacaaaaaaa gtttagaaga agtaaaagat 5100 agtgtctctt cttccagtta tctacagatg agattcagag agctaaaaga aaagtatgaa 5160 agaggaactc tggaagaaaa agataaaaag atgatatttc ttatcaatct gtttgagaaa 5220 gcatcagtgt ctgaagattc agacgttcta acaattggga tgaaatttca aactatgtta 5280 actcagatta taaaattacc taattttata aatgagaatg ctttaaacaa gatgtcaagt 5340 tataaagatt tttcaaaact ttatcctaat ttaaaaaaga atgaagattt atataaaagc 5400 actaagaact taaagataga cgaggatgct gttttagagg aagatgagtt atataagaag 5460 attgcatcta gcttagaaat ggaatctgtc catgacataa tgataaaaaa tcctgaaaca 5520 attctgatag caccattgaa tgatagagat tttttactta gtcagctgtt catgtacaca 5580 agcccttcta aaagaaacca gttatcgaac caatctacag agaaacttgc tttagataga 5640 gtgttaaggt caaaagctag aacatttgta aacatttctt ccactgtgaa gatgacttat 5700 gaagaaaaca tggaaaagaa aatcttagaa atgctaaaat ttgatttaga ttcatattgt 5760 tcatttaaaa catgtgtaaa tctagttatc aaggatgtta atttcagcat gctgattcca 5820 atattagatt ctgcataccc ttgtgaatct aggaaaagag ataactacaa tttcaggtgg 5880 tttcagactg agagatggat acctgttgtt gaaggctctc cgggactagt agtaatgcat 5940 gctgtctatg gatcaaatta tatagagaac ttaggtttaa aaaacatccc tctaacagac 6000 gatagtatta atgttttaac aagcacgttt ggaacaggtt taatcatgga agatgtaaaa 6060 tccctagtta atggcaaaga cagcttcgaa acagaggctt ttagcaattc taatgaatgt 6120 caaagattgg tgaaagcatg caattatatg atagcagcac aaaacaggct tttagcaatt 6180 aacacatgct ttactaggaa aagctttccc ttctattcta agttcaatct agggagaggg 6240 tttatctcaa acacattagc tctcctatcc accatctaca gtaaagaaga atcctatcat 6300 tttgtttcta cagctagtta taaattagac aaaactatca gaactgtggt aagtgctcag 6360 caagatatga acttagagaa aatactggac actgctgtat acatatcaga taaattgcag 6420 tcacttttcc caacaattac aagagaggat atagttttaa tattgcaaaa tgtttgcctt 6480 gacagtaaac ctatatggca gagtctagaa gacaaaatga aaaagattaa caattcaaca 6540 gcaagtggct tcacagtgtc aaatgtgatt ctatcacata acagtgaatt gaacacaatc 6600 cagaaacaaa ttgtctggat gtggaacatg ggtttgtgtt ctcacagaac attagatttt 6660 gttatcaggt atattagaag aagggatgta agatatgtaa aaactgaaga acaagatgaa 6720 tcaggaaatt atgtctctgg aactatgtac aaaataggga tcatgacaag aagctgctat 6780 gtggaattga tagcatctga tcaagatgta gcagtttctt tgagaacacc atttgagata 6840 ttgaatgaaa gagagtatct ttttgacaca tacagagaaa gtatagagaa attattggca 6900 gaaattatgt ttgataaagt gaacataata aatcaaacaa ccacagattg ttttcttaga 6960 accaggagat cttgcatcag aatgaccaca gacaacaaaa tgattgtaaa ggttaatgct 7020 acatcaagac aaataagact agagaatgta aaattagttg taaagataaa atatgaaaat 7080 gtgaattccg atgtatggga tattatagaa agccaaaaat ctctagtctt aaggctccct 7140 gaagtagggg aatttttctc tgatatgtat aaaactgcag actctgaaac tgaaacaatc 7200 aaaaccataa aaaacaggct tatgacttct ttaactttca tagaagcctt tggaaactta 7260 tcacagcaga tcaaagagat tgtagatgat gatatcagag aaacgatgga tgaattctta 7320 atgaacatcc gggatacctg cttagaaggt ttggaaaact gcaaaagtgt ggaagaatat 7380 gatagctatc ttgatgaaaa tggatttaat gacacagtag aactattcga aaacttgcta 7440 agaacacatg acaactttga aaatgagtat agtcctcttt tttcagagat tgttgacaaa 7500 gcaaaacagt atactagaga tttagaaggt ttcaaagaaa tactgctcat gcttaaatat 7560 tctctaataa atgatgcatc aggatttaaa agctatagag ccactggaat gcatgctgtt 7620 gagctaatgg caaaaaagca catagagata ggggaattca acttgttagg aatgatccaa 7680 ttgattaaag cttgtgaaac atgccacaac aatgactcta tattaaactt agcaagttta 7740 aggaatgttc ttagcaggac atatgccaca tttgggagga gaataagatt ggatcatgat 7800 ctggacttgc aaaacaactt aatggaaaaa agttatgatt tcaagacgct ggttttacca 7860 gaaataaaat tatcagaact atctagggaa atactgaaag aaaatgggtt tgttatatct 7920 ggagagaatc taaaaatgga taggtctgat gaagaatttg tgggtcttgc cagttttaat 7980 gtgttgaggc tagatgagga agaaatgtat gaaggtttga tcaaagaaat gaaaattaaa 8040 aggaaaaaga aagggttttt atttccagca aacacacttc tactaagtga gttgataaag 8100 ttcttgattg gaggaataaa gggaaccagc tttgatatag agacattgtt acggaacagt 8160 tttagaccag acatattttc aactgacaga ttgggaagat taagttccag tgtacctgca 8220 ctcaaagttt atgcaactgt ttatatggaa tataagaatg tcaattgtcc tttaaatgag 8280 atagctgaca gcttagaagg ttatctaaaa ctgacaaaaa gcaggtccaa ggaacatttc 8340 ttgtctggaa gagttaaaaa agctttgata caattaagag atgaacaatc gcgaactaaa 8400 aaactagagg tctataagga tatcgcaaat ttccttgcta ggcacccact atgtttatca 8460 gaaaaaacat tgtatggaag atatacctac tctgatatca atgattatat catgcaaaca 8520 agagagatta ttttgagtaa aataagtgag ttggacgagg ttgttgaaac agatgaagac 8580 aatttcttgc ttagttatct aagaggggaa gaagatgcct ttgatgaaga tgagcttgat 8640 gaagaagaag acacagatta aattgaaagt aatgactaac aatccatgaa taacagatta 8700 gatataactt agaatataaa tttattgcta ttttagaatt agattagatc tacttagcct 8760 aaaacaattt ggtgaaccaa atctatagtg tatataaatg tagagtcccg gtatagtttc 8820 actggaggga attcttatgt aatttgtaaa gtctggctgt ggagaggtta tatgttttag 8880 ttgtacctga ttgctct 8897 //