ID D01092; SV 1; linear; genomic RNA; STD; VRL; 3585 BP. XX AC D01092; XX DT 05-AUG-1992 (Rel. 33, Created) DT 07-DEC-2007 (Rel. 94, Last updated, Version 5) XX DE Barley yellow mosaic virus RNA 2 for polyprotein, complete cds. XX KW polyprotein; RNA 2. XX OS Barley yellow mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-3585 RX PUBMED; 2016599. RA Kashiwazaki S., Minobe Y., Hibino H.; RT "Nucleotide sequence of barley yellow mosaic virus RNA 2"; RL J. Gen. Virol. 72:995-999(1991). XX DR MD5; 88c9434c76e7de8099da9c5e79e98707. XX CC Data kindly submitted in computer readable form by: CC Satoshi Kashiwazaki CC National Agriculture Research Center CC Tsukuba, Ibaraki 305 CC Japan XX FH Key Location/Qualifiers FH FT source 1..3585 FT /organism="Barley yellow mosaic virus" FT /segment="2" FT /strain="II-1" FT /mol_type="genomic RNA" FT /clone="pBYT8, pBYT296" FT /db_xref="taxon:12465" FT CDS 155..2827 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q01207" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR036417" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/Swiss-Prot:Q01207" FT /protein_id="BAA00876.1" FT /translation="MSASSSRQLFDCGSLDWPNKSLFGDPTTRDVMHEHISSTWNAVIR FT RHMLAPNADAETILGRDGLPSAQFDAYGAMLPSFIQALNAPTTRLRITHRCPTAESILC FT ADASHAPWLYMANNVCAYEATHLKPVQTFIAFDFAHGYCYLSLFIPLSFRITFENARSF FT SRFLEQLPDILGAYPTLAAIYKTMLFAIRLFPEVLQAPIPIIAKRPGVLQFHVSDARGL FT PPSWFPMKCGSVRSFVALITNNLNSDLLDGIVGSNGDGEHYTNWNSGHDHWIVNRFITV FT RDLHSSLKSALDVDLDTEGGRNAVLDLLLDLGVTNLVRREKRFPAHFQGAESVYLLLSC FT ERVGNELVAVQDALQEPLANHSGLDLRALIINLGGLPSRHSDICYTRNIFENDNHLVWN FT FEFYRIASITRNAQIDRDMLSSSMANLFSNFVSESSNGQYRVKEPRPIAQYRVEHDEPV FT ASGAPSAWWQVLIGITTAILGAIIFFLWRCFLRAKRVKFQAKDSFPWFTTSGDDDSPPP FT PGDSPSHPPGRSPDRVLPRTVVRDLSFNDDDDLHSVDLDEAGSRFGEVVSLIARGNLRE FT LAGAIPESLSNLTLLQTSASGSGFYTMVALYLATLGDAITAFHEHNDASPTTTQSLRTV FT ELQLEARGLRFNEAGTPANLIQRGVNSSVGRALVRLTQSALLATGEKFRTRMATTLERI FT AAERLNTLTAYDQRVIEMTTELLAAIKTALEVERSELTPHLANAEALLQVYNNLFSTDY FT ASASLLALRREMILRSAEGRVGEQPTSASDAANEELVQRSMTKLDKEIELFQAQIDSQR FT RAVTITEASNLRENILQPINTVANIAMAGAFLRGGARHRMPGMPDVAAPMPNPFRAFSG FT RGHSLTTTRSGGLFRRPRV" FT regulatory 3471..3475 FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 3585 BP; 925 A; 930 C; 779 G; 951 T; 0 other; aaaataaaac aaaacaaaac cgaacaaagc aaaacgaaac aaacacaaac aacacacgct 60 ccccgagctc acaatactcg tagagtgatt tccgtcatcc tactgtttgc aagctttcca 120 gcaaaccaac ccgcttgctt tcaaaccctc catcatgtct gcttctagtt cacggcaact 180 cttcgactgc ggcagtcttg actggccaaa taagagctta tttggcgatc ccacaacgcg 240 agatgtcatg cacgaacaca tttccagcac gtggaatgcg gttattagaa ggcacatgtt 300 ggcgcccaat gccgacgccg agactatatt gggccgtgat ggtttaccat ctgctcaatt 360 tgacgcttat ggagctatgc tacctagctt cattcaagct ctaaatgcac ccacaacgcg 420 tctccgaatc acgcaccgct gtcccaccgc tgagtccatc ttgtgcgctg atgcatccca 480 tgctccttgg ttgtacatgg caaacaatgt atgcgcatac gaagcaactc acctgaagcc 540 tgtacaaact ttcatcgctt tcgactttgc gcatggctat tgttacctca gtctcttcat 600 accactcagc tttcgcatca ccttcgaaaa tgctcgaagt ttcagtcggt tcctcgagca 660 gctccctgac atcttaggtg cgtatccaac attggccgca atatataaaa caatgctatt 720 cgctattagg cttttcccag aggtgctaca agctccaatt cccatcatcg caaaaaggcc 780 tggcgtgctc caattccacg ttagtgatgc cagaggacta ccaccctcat ggttccccat 840 gaagtgtggc agcgtacgat ctttcgtagc actcattacc aacaacctaa acagcgattt 900 gcttgatgga attgttggtt caaatggtga tggcgagcac tacacaaatt ggaactctgg 960 acatgatcac tggattgtga atcgattcat aacagtcaga gatttgcaca gtagcttaaa 1020 gtcagctctg gatgttgact tggacacaga gggtggacga aatgccgttc tcgatttgct 1080 tctagatctt ggggtcacta atcttgttcg aagagagaaa cgcttcccag cacacttcca 1140 aggagctgaa agcgtatatc tacttctatc gtgcgagaga gttgggaacg agttagtagc 1200 cgtgcaagat gctctgcagg aaccattggc taatcattct ggtttggatt tgagagctct 1260 catcatcaat cttggcggtt taccaagcag acactctgat atttgctaca cacgcaacat 1320 ttttgaaaac gataatcatc tggtttggaa ctttgagttc taccggatag cctcaatcac 1380 gaggaatgca caaattgaca gagatatgct gagctcatcc atggcgaact tgtttagcaa 1440 ctttgtctca gaatcgtcaa atggccagta cagagtcaaa gaaccaagac ctattgctca 1500 gtacagggtt gagcatgacg aaccagttgc tagtggtgcc ccatctgctt ggtggcaggt 1560 tcttattggc atcaccaccg caatccttgg cgcaataata ttctttctct ggaggtgttt 1620 cttacgtgct aagcgtgtga aattccaggc gaaggactcc ttcccatggt ttaccacatc 1680 tggtgatgat gactcaccgc ctccccctgg tgactccccg tcgcaccctc ctggacgcag 1740 cccagatcga gttcttccgc gcacagttgt tcgagatctt agcttcaatg acgatgatga 1800 cttacacagc gttgatctcg acgaagctgg atcgcgtttt ggggaggttg tctctttaat 1860 tgcaagggga aatcttcgcg agttagctgg tgcaattcct gaatctctca gcaacctaac 1920 cctccttcaa acgagtgcga gtgggtcagg tttttacact atggtggctt tgtaccttgc 1980 cactttaggg gatgccatca ctgcgtttca tgagcacaat gatgcctcac ctaccacaac 2040 tcaatcactg cgaaccgtcg aacttcagct tgaagctcgt ggcttacgtt tcaatgaagc 2100 tggtacaccc gcaaatctca tccagagggg cgttaattct tctgttggta gagcacttgt 2160 gcgactcaca cagagtgctc tcctagctac tggtgagaag ttccggacac gcatggcaac 2220 cacacttgaa agaattgctg ctgagcgtct taacacatta accgcttacg atcagcgagt 2280 tattgaaatg acaactgagc tgctagcagc gatcaaaacc gctcttgagg ttgagcgcag 2340 tgaacttacc ccacatcttg caaatgccga ggctttgctt caagtttaca ataatctctt 2400 cagcaccgat tacgcttcag catcgctgct tgctctcagg cgcgagatga ttcttaggag 2460 tgccgaaggg cgtgttggag aacagcccac tagtgcttct gacgctgcta acgaggagtt 2520 ggttcaacgt tctatgacaa aattggataa ggaaattgag ttgttccaag cacaaattga 2580 tagccagcgc cgcgccgtta ccataactga agcatccaat ctcagagaga atatattgca 2640 gccaatcaac actgttgcaa atattgctat ggctggagct tttctgcgtg ggggcgcacg 2700 tcatcgcatg ccaggaatgc cagacgtagc tgcgcccatg cccaaccctt ttcgagcttt 2760 ctcagggagg ggacattcac tcacgacaac tcgaagtggc ggtcttttcc ggcgccctcg 2820 agtctagaat tctcatcaca gcagcattta ctttccaccg ccttagcata gtttagatca 2880 atatcatcca tttctctatc ctctcgccat ctgcacacca ttgccattaa tatggtagag 2940 ttagcgattc atcccttgct acgctcaaaa tctccatctt tagaccacct gcaaacacac 3000 aaaataccaa aaataccatt tatcattctg tttcaaacgc cagcatttta aattacccgc 3060 aattgcatta tcgtttcgcc atcaaagtat ggttcgtttc atcaacatct gctcgcacga 3120 ttgggtgtat ggggccagtg ttgtttcggg tatggaattc aaatggtaag aaattgattc 3180 ttctcaccat gagttttcca ggggataagt tcggtgctac agctagcggc tgtatcctta 3240 gcgatgcccc acaccacgaa acaccattga ttcttaggaa ttagcctttc aaatatccca 3300 actgcaatga gcacgatagc attgcatctc cactcaaggt ccggttagag tccctggcag 3360 gtgtgggcta caggagcatg ggaatgcttc tctgtcacca tctgtcgtct gcggcctcta 3420 tctagcacta cgagtggagc cacgtcttta aatccccagc atgtttactt tatgttctgc 3480 atagaaaacg tcacatctgt gatacaaaaa catgcaacac gtgcccatca tcggtcgcgg 3540 gttgtaggtc tgacgaacaa caactttgta cacaggaaat gtgac 3585 //