ID   D00940; SV 1; circular; genomic DNA; STD; VRL; 2593 BP.
XX
AC   D00940;
XX
DT   10-JUN-1992 (Rel. 32, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE   Potato yellow mosaic virus-[Venezuela] DNA A, complete genome sequence.
XX
KW   .
XX
OS   Potato yellow mosaic virus - [Venezuela]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2593
RX   PUBMED; 1856690.
RA   Coutts R.H., Coffin R.S., Roberts E.J., Hamilton W.D.;
RT   "The nucleotide sequence of the infectious cloned DNA components of potato
RT   yellow mosaic virus";
RL   J. Gen. Virol. 72:1515-1520(1991).
XX
RN   [2]
RX   PUBMED; 8132573.
RA   Fontes E.P., Eagle P.A., Sipe P.S., Luckow V.A., Hanley-Bowdoin L.;
RT   "Interaction between a geminivirus replication protein and origin DNA is
RT   essential for viral replication";
RL   J Biol Chem 269(11):8459-8465(1994).
XX
DR   MD5; 4fde21ad2529ea8a15301dffa79780cc.
DR   GOA; P0C6G3.
DR   InterPro; IPR002488; Gemini_C4.
DR   UniProtKB/Swiss-Prot; P0C6G3; AC4_PYMVV.
XX
CC   The genome of PYMV is composed of two single-stranded DNAs A and
CC   B.  Nucleotide sequences of DNAs A and B revealed the
CC   presence of 6 potential coding regions for proteins arranged
CC   bi-directionarily in a leftward (L) and rightward (R) orientation
CC   (AL1,2,3 and AR1 in A,BL1 and BR1 in B).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2593
FT                   /organism="Potato yellow mosaic virus - [Venezuela]"
FT                   /mol_type="genomic DNA"
FT                   /clone="pMAH2"
FT                   /db_xref="taxon:223310"
FT   CDS             complement(join(1519..2593,1..11))
FT                   /codon_start=1
FT                   /product="AL1"
FT                   /db_xref="GOA:P27258"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/Swiss-Prot:P27258"
FT                   /protein_id="BAA00782.1"
FT                   /translation="MPRKGSFSIKAKNYFLTYPQCSISKEEALSQLQNLTIPVNKKFIK
FT                   ICRELHENGEPHLHVLIQFEGKYNCTNNRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTIEWGLFQIDGRSARGGQQTVNDAAAEALNSGTKEAAMKIIKEKLPEKFLFQYH
FT                   NLSCNLDRIFMKAPETWAPPFPLSSFTNVPDEMQEWADGYFGKSSAARPERPISIIIEG
FT                   DSRRGKTMWARVLGPHNYLSGHLDFNPRVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQ
FT                   RDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKAFLDKDENASLKNWTLKNAVFITIT
FT                   APLYQEGTQASKEEGNQEETH"
FT   CDS             321..1076
FT                   /codon_start=1
FT                   /product="AR1"
FT                   /db_xref="GOA:P27255"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/Swiss-Prot:P27255"
FT                   /protein_id="BAA00779.1"
FT                   /translation="MPKRDAPWRSMAGTSKVSRNANYSPRSGIGPRINKAAEWVNRPMY
FT                   RKPRIYRTLRTPDVPRGCEGPCKVQSFEQRHDILHTGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRYQVMHRFYGKVTGGQYASNEHAIVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSILN"
FT   CDS             complement(1073..1471)
FT                   /codon_start=1
FT                   /product="AL3"
FT                   /db_xref="GOA:P27264"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/Swiss-Prot:P27264"
FT                   /protein_id="BAA00780.1"
FT                   /translation="MDSRTGELITARQAENGVFIWEIENPLYFKINQVEDMQYTRTRIY
FT                   SVQIRFNHNLRRALDLHKAYLNFQVWTTSMTASGSNYLARFRQLVLLYLDRLGVISINN
FT                   VIRSVRFATDRSYVNYVLENHSIKYKFY"
FT   CDS             complement(1218..1607)
FT                   /codon_start=1
FT                   /product="AL2"
FT                   /db_xref="GOA:P27261"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/Swiss-Prot:P27261"
FT                   /protein_id="BAA00781.1"
FT                   /translation="MRSSSPSQPPSIKKAHRQAKKRAIRRRRIDLDCGCSIYFHIDCAG
FT                   HGFTHRGAHHCTSGREWRVYLGDRKSPLFQDKPSRGHAIHQDQDIQRPNPVQPQPQESI
FT                   GSPQSIPELPSLDDIDDSFWVELFS"
XX
SQ   Sequence 2593 BP; 660 A; 564 C; 595 G; 774 T; 0 other;
     tttcgtggca tttttgtaaa tatgaatgtt ctcccaatat gttcccccta ttgctctggc        60
     tctcaaaact cttatgaatt gggggaactg ggggaactta tatagtagaa gttcctaaag       120
     gcagatcaac acgtgcggcc atccgttata atattaccgg atggccgcgt ttttttttta       180
     atgggcctta tttgtaatgg gctttaattt ggcccaatca acgttagtct gacacaccta       240
     gataagtgga attactttgt cgctaagttg tgattttgtc tataaattaa agcctcttgg       300
     cccactatct ttaactcaaa atgcctaagc gcgatgcccc atggcgttca atggcgggaa       360
     cctcaaaggt tagccgcaac gctaattact ctcctcgttc aggaattggg ccaagaataa       420
     acaaggccgc tgaatgggtt aataggccca tgtaccggaa gcccaggatc tatcggacgc       480
     tgaggacgcc tgatgttcct agaggctgtg aagggccttg taaggtccag tctttcgagc       540
     agcgacacga tatcttacac actggcaagg taatgtgcat atctgacgtt actcgcggta       600
     acggtattac tcaccgtgtc gggaagcggt tctgtgttaa gtccgtttac atattaggta       660
     agatatggat ggacgagaat atcaagctga agaaccacac caacagcgtc atgttctggc       720
     tggtcagaga ccgaagaccg tatggaacgc ctatggattt cggacaagtg ttcaacatgt       780
     tcgacaatga gcctagcacc gccactgtta agaacgatct tcgtgatcgt tatcaggtca       840
     tgcataggtt ctatggcaag gtgacaggtg gacagtatgc cagcaacgag catgctattg       900
     tgaggcgttt ctggaaggtc aacaaccacg ttgtttacaa ccaccaggaa gctggcaaat       960
     acgagaatca tactgagaac gccctattat tgtacatggc atgtactcat gcctcaaatc      1020
     ctgtatatgc aacacttaag attcggatct atttttatga ttcgatctta aattaataaa      1080
     atttatattt tattgaatga ttttccagta cataatttac atatgatcta tctgttgcaa      1140
     aacgaacaga tctaattaca ttgttaattg aaatgacacc taaccggtct aagtacagaa      1200
     gaactaattg tctaaatcta gctaaataat tcgacccaga agctgtcatc gatgtcgtcc      1260
     agacttggaa gttcaggtat gctttgtgga gatccaatgc tctcctgagg ttgtggttga      1320
     accggatttg gacgctgtat atcctggtcc tggtgtattg catgtcctct acttggttta      1380
     tcttgaaata gaggggattt tctatctccc agataaacac gccattctct gcctgacgtg      1440
     cagtgatgag ctcccctgtg cgtgaatcca tgtcctgcgc agtctatgtg gaagtatatg      1500
     gagcaaccgc agtctaagtc aatgcgtctc ctcctgattg ccctcttctt tgcttgcctg      1560
     tgtgccttct tgatagaggg gggctgtgat ggtgatgaag accgcattct ttagagtcca      1620
     gtttttgaga gacgcatttt cgtctttgtc gaggaaagct ttatagctgg aaccctcacc      1680
     aggattgcag agcacgattg atgggatacc gcctttaatt tgaacaggct ttccgtactt      1740
     acaatttgat tgccaatccc tttgggcccc aagcagttct ttccagtgct ttagctttag      1800
     atattgcggt gcgacgtcat caatgacgtt atactccact tcattcgaat agaccctggg      1860
     attgaaatca agatgaccgc tcaagtaatt atgtgggcct aagactcgcg cccacatcgt      1920
     cttgcctctt cgagaatcac cttcaattat aatactaata ggtctttctg ggcgcgccgc      1980
     actactcttt ccgaaataac catctgccca ctcttgcatc tcgtcgggaa cgttagtgaa      2040
     agaggagagt ggaaacggag gagcccatgt ctctggagcc ttcatgaaaa tcctatcgag      2100
     gttacaggat aggttatgat actgaaaaag aaacttttcc ggcaacttct ctttaatgat      2160
     tttcatggct gcttcctttg ttccagagtt tagtgcctcg gcagctgcgt cgttaactgt      2220
     ctgctggccc cctcgagcac ttcttccgtc aatctggaac aaaccccatt cgatggtgtc      2280
     tccgtctttc tcgacatacg acttgacatc ggagctcgat ttagctccct gaatgttcgg      2340
     atggaaatgt gttgacctgg ttggggacac cagatcgaac agtctgttat ttgtgcagtt      2400
     gtatttgcct tcgaactgga taagaacgtg gagatgaggt tccccattct cgtgaagttc      2460
     tctgcaaatc ttgatgaatt tcttgttgac tgggatagtt aggttttgaa gttgggaaag      2520
     tgcttcttct ttgctaatag agcattgagg atacgtaagg aaataatttt tggctttaat      2580
     agagaacgaa ccc                                                         2593
//