ID D00800; SV 1; circular; genomic DNA; STD; VRL; 2672 BP. XX AC D00800; XX DT 05-AUG-1992 (Rel. 33, Created) DT 07-DEC-2007 (Rel. 94, Last updated, Version 5) XX DE Miscanthus streak virus - [Japan 98] genomic DNA, complete sequence . XX KW . XX OS Miscanthus streak virus - [Japan 98] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2672 RA Sugimoto K., Hirochika H., Minobe Y., Kawamata H., Hibi T., Nanba S., RA Yamashita S., Tsuchizaki T.; RT "Nucleotide sequence of cloned Miscanthus streak virus DNA"; RL Unpublished. XX DR MD5; 4161f95f2b1b6e5086c07f16ed6cb0f2. XX CC These data kindly submitted in computer readable form by: CC Hirohiko Hirochika CC National Institute of Agrobiological Resources CC 2-1-2 Kannondai, Tsukuba CC Ibaraki 305 CC Japan XX FH Key Location/Qualifiers FH FT source 1..2672 FT /organism="Miscanthus streak virus - [Japan 98]" FT /mol_type="genomic DNA" FT /db_xref="taxon:268778" FT CDS 1..405 FT /codon_start=1 FT /note="ORF V0" FT /db_xref="GOA:O72912" FT /db_xref="UniProtKB/TrEMBL:O72912" FT /protein_id="BAA25576.1" FT /translation="MGCVFIMGRRGSETNNITAPPPWPISRPLASVRGAFGPRSLPPLA FT EDRTQAAVKWHRHLSVFALVPLVCGFKKRRRLRDRTKTKGTQVACLRTWVIKFCFVCKF FT LWIPMVAVLAILMMVHCMVYLWHLLRCFAS" FT CDS 315..569 FT /codon_start=1 FT /note="ORF V1" FT /db_xref="GOA:O72913" FT /db_xref="UniProtKB/TrEMBL:O72913" FT /protein_id="BAA25577.1" FT /translation="MDPYGSRPSHPDDGALHGILVAFIAVLCLIGCLWAAYRLFLKECL FT TDCSQHASSGVVAGPRPAATGPTAVVVHNGAEAQRSSAF" FT CDS 535..1302 FT /codon_start=1 FT /note="ORF V2" FT /db_xref="GOA:O72914" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:O72914" FT /protein_id="BAA25578.1" FT /translation="MVQKRKDLRRSDAGSAVRAKLHKASTGKAFPVGKRAPLQIRSYAW FT ETPATATTPSGPISITDGTIFMCNTIDPGTGDDQRSRHTTMLYKMSLNVVLWPGATTAQ FT IVGPFRVNFWLVYDAAPTGVVPKLTDIFDVAYPKWGNTWQVSRSNVHRFIVKRKWKVDY FT QSSGVPVGKRQSSGVEDAPVNNVVECNKFFEKLRVKTEWANTSTGAIGDVKKGALYLCA FT NTRQMPAGDSVTTSCTTMMQGSTRLYFKVLGNQ" FT CDS complement(1475..1885) FT /codon_start=1 FT /transl_except=(pos:1883..1885,aa:Met) FT /note="ORF C2" FT /db_xref="GOA:O72915" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O72915" FT /protein_id="BAA25579.1" FT /translation="MQPNGPRRPRSIYICGPSRTGKTTWARNIGRHNYYNSTVDFTHYD FT KDAIYNVIDDVPFKFLPQWKALVGAQRDYIVNPKYGKKKKIPGGIPSIILTNDDEDWIK FT DMKPAQVEYLHANAHVHYMYEGQKFYALPAEE" FT CDS complement(1936..2589) FT /codon_start=1 FT /note="ORF C1" FT /db_xref="GOA:O72916" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:O72916" FT /protein_id="BAA25580.1" FT /translation="MRAPASSAASNRPGPSNHPTPRWNSKQFFLTYPHCNLTPSELMKE FT LFSRLTEKIPGYIKVSQEFHKDGDPHLHVLIQLNTKLCTRNPKFFDVQGFHPNIQPVRD FT AEKVFGYISKTNGDSDEMGELQLRNKKPEKPTRDQRMAMIIASSTNRNEYLSMVRKEFP FT FDWAIRLQQFEYSAAALFTEPPPVYQSPYPNEQIVCPPELVDIIDQEWNQVTTD" XX SQ Sequence 2672 BP; 573 A; 621 C; 733 G; 745 T; 0 other; atgggctgcg tatttataat gggccggcgg gggagcgaaa ccaataatat taccgctccc 60 cctccctggc ccattagtag gccccttgcc tcggtgcgcg gtgcctttgg tccccgttcc 120 ttgccgcctt tggcagaaga tcgcactcag gctgctgtaa aatggcaccg ccatttgagt 180 gtttttgctt tggtgccttt ggtttgcggc tttaaaaaga ggcggaggct cagagatcgc 240 accaaaacca aaggtacgca ggttgcttgt cttcgaactt gggtcattaa gttttgcttc 300 gtttgtaagt ttttatggat ccctatggta gccgtcctag ccatcctgat gatggtgcac 360 tgcatggtat acttgtggca tttattgcgg tgctttgcct cataggttgc ctttgggcag 420 cataccgact gttccttaag gagtgcctta ctgattgcag tcagcacgct tcatcaggcg 480 tcgtcgcggg tcctcgtccg gctgcaacag gtcctactgc tgttgttgtg cataatggtg 540 cagaagcgca aagatcttcg gcgttctgat gccggttctg ccgttcgggc caaactgcat 600 aaggcctcga ctgggaaggc cttccctgta gggaagcggg ctcctctgca gatacggtcc 660 tatgcatggg agacgcctgc cacggcgacc accccttccg gacctatcag tattactgac 720 ggcaccatct tcatgtgtaa caccattgac cctgggactg gagacgatca gagatcgcgg 780 cataccacga tgctctataa gatgtcattg aacgtggtgc tctggcctgg tgcgactacg 840 gcccaaatag ttgggccttt ccgcgtgaac ttctggcttg tgtatgatgc tgccccgact 900 ggagttgtcc cgaagctgac ggacatcttt gacgtggcct atccgaaatg gggaaacact 960 tggcaggttt cccgctctaa tgtgcatagg ttcatagtta agcgtaaatg gaaggtggac 1020 taccagtcct ctggcgtccc tgttggcaag agacagagca gcggtgttga agacgcccct 1080 gttaataatg tggtggagtg caacaagttc ttcgagaagc tgcgtgtgaa gaccgaatgg 1140 gcgaacacct ctaccggtgc aattggggac gtgaagaagg gtgcgttgta cctgtgtgcc 1200 aatacccggc agatgcctgc tggtgactca gtcaccacga gttgtaccac catgatgcaa 1260 gggtctaccc gattgtactt caaagtgctg gggaaccagt aataataaaa acttatttat 1320 tataaattgc aaacctgtgg attacatgat aatgtgagcg cattatgcgc gacaacaaac 1380 tcaagaaatt acataaattt ggggggtagg ggcaaagcag gcggctatgg gcgcgcccgc 1440 gggcaacaca cttaaaaaaa acacaacaat agattcactc ttcggccggc agggcgtaga 1500 acttctgtcc ttcgtacatg taatgtacgt gggcgtttgc gtgcaggtac tccacttgtg 1560 caggtttcat gtccttgatc cagtcttcgt cgtcattggt tagaatgatg gacgggattc 1620 ccccagggat tttcttcttc ttgccgtact tgggattcac tatgtagtca cgctgtgctc 1680 ccaccagcgc cttccactgc ggcaagaact tgaaaggcac atcgtcgatg acgttgtata 1740 ttgcatcttt gtcatagtgt gtgaagtcta cggttgagtt gtagtagttg tgcctcccga 1800 tgtttctggc ccaagtggtc tttccagttc ggcttgggcc gcagatgtat atgcttcgtg 1860 gtctccgcgg cccgttaggc tgtattcaaa ccactgttgg tttgtaagta ttcaagaaat 1920 ttgaaagagt gaagcttaat cggtagttac ctggttccat tcctggtcta tgatgtcaac 1980 gagctccggc ggacagacga tctgctcatt tgggtacggt gactgatata ccggaggtgg 2040 ttcggtaaac aaggctgctg cactgtattc aaactgttgg agtctgatgg cccagtcaaa 2100 tgggaattct ttacggacca tggacaggta ttcattccta ttggtggagg aggctattat 2160 catagccatc ctttgatcac gtgtaggctt ctcaggtttc ttgttcctga gttggagttc 2220 acccatttca tcagaatcac cgttggtttt ggatatgtat ccgaaaacct tttcagcatc 2280 tctgacgggc tgaatgtttg ggtggaaacc ctgaacatca aagaacttgg ggttccttgt 2340 gcatagtttg gtgtttagct gtataaggac atggagatgc gggtccccgt ccttatggaa 2400 ctcttgggat accttaatgt atcctggaat tttctcggtc aggcgagaga acaattcctt 2460 catcagctcg gatggtgtta ggttgcagtg tggataggta aggaagaatt gcttgctgtt 2520 ccaacgtggt gttggatggt ttgaaggacc aggacggttg gatgctgcag atgatgcagg 2580 tgccctcatc tctactactc tatgggtgtg gctccgatgc tctcagaaaa cttgctactg 2640 gtttcgctgg tgccggtgcc acccctcgtt ag 2672 //