ID D00645; SV 1; linear; genomic RNA; STD; VRL; 2916 BP. XX AC D00645; XX DT 08-NOV-1990 (Rel. 25, Created) DT 07-DEC-2007 (Rel. 94, Last updated, Version 9) XX DE Orthotospovirus tomatomaculae genomic RNA, segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 2-72, 2848-2915 RX PUBMED; 2607343. RA De Haan P., Wagemakers L., Peters D., Goldbach R.; RT "Molecular cloning and terminal sequence determination of the S and M RNAs RT of tomato spotted wilt virus"; RL J. Gen. Virol. 70:3469-3473(1989). XX RN [2] RP 1-2916 RX PUBMED; 1693160. RA De Haan P., Wagemakers L., Peters D., Goldbach R.; RT "The S RNA segment of tomato spotted wilt virus has an ambisense RT character"; RL J. Gen. Virol. 71:1001-1007(1990). XX DR MD5; 80a764d41ce67a4be85bb001baf8d11b. DR EuropePMC; PMC2828552; 20151164. DR EuropePMC; PMC3165796; 21715500. DR EuropePMC; PMC3668599; 23722858. DR EuropePMC; PMC3838119; 24067954. DR EuropePMC; PMC4178757; 25100845. DR EuropePMC; PMC4262298; 25506310. XX CC These data kindly submitted in computer readable form by: Peter De CC Haan CC Department of Virology CC Agricultural University Wageningen CC Binnenhaven 11 CC 6709 PD Wageningen CC The Netherlands. XX FH Key Location/Qualifiers FH FT source 1..2916 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /isolate="CPNH9" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052585" FT repeat_region 1..70 FT /rpt_type=INVERTED FT /note="inverted complementary sequence" FT variation 16 FT /replace="c" FT /citation FT CDS 89..1483 FT /codon_start=1 FT /note="ORF for non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/Swiss-Prot:P26002" FT /func_characterised="identical sequence" FT /protein_id="BAA00540.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKVVLWLYCKVGIFPVKKKRFLSQHVYIPIFDDIDFSINIDNSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIESIMNRSDITDRFQLQEKDIIPNDKYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQASTDSHFKLSLWLRVPKVLKQVSIQKLFKVAGDETNKTFYLSIACIP FT NHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPKGSVPMLWL FT ETHTSLHKFFATNLQEDVIIYTLNNLELTPGKLDLGERTLNYSEDAYKRKYFLSKTLEC FT LPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKVKEA FT YASGSK" FT misc_feature 483..491 FT /note="pot. N-glycosylation site" FT misc_feature 716..724 FT /note="pot. N-glycosylation site" FT misc_feature 896..904 FT /note="pot. N-glycosylation site" FT misc_feature 959..967 FT /note="pot. N-glycosylation site" FT misc_feature 1229..1237 FT /note="pot. N-glycosylation site" FT repeat_region 1583..1835 FT /note="hairpin structure" FT CDS complement(1987..2763) FT /codon_start=1 FT /note="ORF for nucleocapsid protein" FT /db_xref="GOA:P25999" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/Swiss-Prot:P25999" FT /func_characterised="identical sequence" FT /protein_id="BAA00541.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENIDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGGTDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTKEALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSVAMEHYSETLNKFYEMFGVKKQAKLAELA" FT repeat_region 2850..2916 FT /rpt_type=INVERTED FT /note="inverted complementary sequence" XX SQ Sequence 2916 BP; 922 A; 563 C; 468 G; 963 T; 0 other; agagcaattg tgtcagaatt ttgttcataa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctcaact agttcagacc cagctgtatt ctgattcaag 240 aagcaaagta gtcctttggc tatactgcaa agtagggatc ttccctgtga agaagaagag 300 atttctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 tgataactct gttctggcac tatctgtttg ctcaaataca gtcaatgcta acggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgcccagctc cactctattg aatctatcat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 caaatacatt gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aggctttagg caaagtgaat gttctatctc ctaacagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcttccactg attctcattt caagctgagc ctctggctaa gggttccaaa 840 ggttttgaag caggtttcca ttcagaaatt gttcaaggtt gcaggagatg aaacaaacaa 900 aacattttat ttatctattg cctgcattcc aaaccataac agtgttgaga cagctttaaa 960 cattactgtt atttgcaagc atcagctccc aattcgcaaa tgcaaagctc cttttgaatt 1020 atcaatgatg ttttctgatt taaaggagcc ttacaacatt gttcatgacc cttcataccc 1080 caaaggatcg gttccaatgc tctggctcga aactcacaca tctttgcaca agttctttgc 1140 aactaacttg caagaagatg taatcatcta cactttgaac aaccttgagc taactcctgg 1200 aaagttagat ttaggtgaaa gaaccttgaa ttacagtgaa gatgcctaca aaaggaaata 1260 tttcctttca aaaacacttg aatgtcttcc atctaacaca caaactatgt cttacttaga 1320 cagcatccaa atcccttcat ggaagataga ctttgccaga ggagaaatta aaatttctcc 1380 acaatctatt tcagttgcaa aatctttgtt aaagcttgat ttaagcggga tcaaaaagaa 1440 agaatctaag gttaaggaag cgtatgcttc aggatcaaaa taatcttgct ttgtccagct 1500 ttttctaatt atgttatgtt tattttcttt ctttacttat aattatttct ctgtttgtca 1560 tctctttcaa attcctcctg tctagtagaa accataaaaa caaaaaataa aaatgaaaat 1620 aaaattaaaa taaaataaaa tcaaaaaatg aaataaaaac aacaaaaaat taaaaaacga 1680 aaaaccaaaa agacccgaaa gggaccaatt tggccaaatt tgggttttgt ttttgttttt 1740 tgttttttgt tttttatttt ttattttatt tttattttat tttattttta ttttattttt 1800 attttattta ttttttgttt tcgttgtttt tgttatttta ttatttatta agcacaacac 1860 acagaaagca aactttaatt aaacacactt atttaaaatt taacacacta agcaagcaca 1920 agcaataaag ataaagaaag ctttatatat ttataggctt ttttataatt taacttacag 1980 ctgctttcaa gcaagttctg cgagttttgc ctgcttttta accccgaaca tttcatagaa 2040 cttgttaaga gtttcactgt aatgttccat agcaacactc cctttagcat taggattgct 2100 ggagctaagt atagcagcat actctttccc cttcttcacc tgatcttcat tcatttcaaa 2160 tgctttgctt ttcagcacag tgcaaacttt tcctaaggct tccttggtgt catacttctt 2220 tgggtcgatc ccgaggtcct tgtattttgc atcctgatat atagccaaga caacactgat 2280 catctcaaag ctatcaactg aagcaataag aggtaagcta cctcccagca ttatggcaag 2340 tctcacagac tttgcatcat cgagaggtaa tccataggct tgaatcaaag gatgggaagc 2400 aatcttagat ttgatagtat tgagattctc agaattccca gtttcttcaa caagcctgac 2460 cctgatcaag ctatcaagcc ttctgaaggt catgtcagtg cctccaatcc tgtctgaagt 2520 tttctttatg gtaattttac caaaagtaaa atcgctttgc ttaataacct tcattatgct 2580 ctgacgattc tttaggaatg tcagacatga aataacgctc atcttcttga tctggtcgat 2640 gttttccaga caaaaagtct tgaagttgaa tgctaccaga ttctgatctt cctcaaactc 2700 aaggtctttg ccttgtgtca acaaagcaac aatgctttcc ttagtgagct taaccttaga 2760 catgatgatc gtaaaagttg ttatatgctt tgaccgtatg taactcaagg tgcgaaagtg 2820 caactctgta tcccgcagtc gtttcttagg ttcttaatgt gatgatttgt aagactgagt 2880 gttaaggtat gaacacaaaa ttgacacgat tgctct 2916 //