ID   D00542; SV 1; linear; genomic RNA; STD; VRL; 369 BP.
XX
AC   D00542;
XX
DT   05-MAR-1991 (Rel. 27, Created)
DT   21-DEC-2007 (Rel. 94, Last updated, Version 20)
XX
DE   Cucumber mosaic virus satellite RNA genomic RNA, complete genome, clone:
DE   CMVYSAT.
XX
KW   .
XX
OS   Cucumber mosaic virus satellite RNA
OC   Viruses; Satellites; RNA satellites; Single stranded RNA satellites;
OC   Small linear single stranded RNA satellites.
XX
RN   [1]
RA   Hidaka S., Ishikawa K., Takanami Y., Kubo S., Miura K.;
RT   "Complete nucleotide sequence of RNA 5 from cucumber mosaic virus (strain
RT   Y)";
RL   FEBS Lett. 174:38-42(1984).
XX
RN   [2]
RP   85-349
RA   Kaper J.M., Duriat A.S., Tousignant M.E.;
RT   "The 368-nucleotide satellite of cucumber mosaic virus strain Y from Japan
RT   does not cause lethal necrosis in tomato";
RL   J. Gen. Virol. 67:2241-2246(1986).
XX
RN   [3]
RX   PUBMED; 2853159.
RA   Masuta C., Kuwata S., Takanami Y.;
RT   "Effects of extra 5' non-viral bases on the infectivity of transcripts from
RT   a cDNA clone of satellite RNA (strain Y) of cucumber mosaic virus";
RL   J. Biochem. 104(5):841-846(1988).
XX
RN   [4]
RX   PUBMED; 2794979.
RA   Devic M., Jaegle M., Baulcombe D.;
RT   "Symptom production on tobacco and tomato is determined by two distinct
RT   domains of the satellite RNA of cucumber mosaic virus (strain Y)";
RL   J. Gen. Virol. 70:2765-2774(1989).
XX
RN   [5]
RX   DOI; 10.1105/tpc.1.12.1165.
RX   PUBMED; 2485234.
RA   Masuta C., Takanami Y.;
RT   "Determination of sequence and structural requirements for pathogenicity of
RT   a cucumber mosaic virus satellite RNA (Y-satRNA)";
RL   Plant Cell 1(12):1165-1173(1989).
XX
DR   MD5; 0b39ed9136e44357e1b5a6fa5b773ee0.
DR   EuropePMC; PMC3088725; 21573143.
XX
CC   These data kindly submitted in computer readable form by:
CC   Martine J. Devic
CC   The Sainsbury laboratory
CC   John Innes Institute
CC   Colney lane
CC   Norwich NR4 7 UH
CC   U.K.
CC   To localize the active domains of the Y satellite RNA, recombinant
CC   RNA molecules were prepared in <J. Gen. Virol. 70, 2765-2774
CC   (1989)>.  The determinant for symptom production on tabacco lies
CC   in the region between nucleotides 1 and 219.  The domain for
CC   necrotic symptoms on tomato resides on the 3' half of the molecule
CC   beyond nucleotide 219.  The cDNA clone was short of the full
CC   length by 6 nucleotides at the 5' end. The missing Y satellite RNA
CC   sequence was known in <FEBS Lett. 174, 38-42 (1984)>.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..369
FT                   /organism="Cucumber mosaic virus satellite RNA"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="Cucumber mosaic virus strain Y"
FT                   /clone="CMVYSAT"
FT                   /db_xref="taxon:12436"
FT   misc_feature    1..369
FT                   /note="Y satellite RNA"
FT   misc_difference 161
FT                   /replace="c"
FT                   /citation=[1]
FT   misc_difference 167
FT                   /replace="c"
FT                   /citation=[1]
FT   misc_difference 173
FT                   /replace="c"
FT                   /citation=[1]
FT   misc_difference 234
FT                   /replace=""
FT                   /citation=[1]
XX
SQ   Sequence 369 BP; 73 A; 84 C; 110 G; 102 T; 0 other;
     gttttgtttg atggagaatt gcgtagaggg gttatatctg cgtgaggatc catcactcgg        60
     cggtgtggga tacctccctg ctaaggcggg ttgagagtgt atctcggact ggaggcggga       120
     tgtctgcggg tgttccgtct gctgcccacg atggtgggag tcacccaagg ggtgactttt       180
     tcagctctgc atttctcatt tgagcccccg ctcagtttgc tagcaaaacc cggcacatgg       240
     ttcgccgtta ctatggattt cgaaagaaac actctgttag gtggtatcgt ggatgacgca       300
     cgcagggaga agctaaggct tatgctatgc tgatctccgt gaatgtctat acattcctct       360
     acaggaccc                                                               369
//