ID D00530; SV 1; linear; genomic RNA; STD; VRL; 5987 BP. XX AC D00530; X14600; XX DT 02-JUL-1990 (Rel. 24, Created) DT 19-JUL-2007 (Rel. 92, Last updated, Version 14) XX DE Potato leafroll virus genes for 28K, 70K, 17K and 53K proteins, DE RNA-dependent RNA polymerase and coat protein, complete and partial cds. XX KW . XX OS Potato leafroll virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5987 RX PUBMED; 2732710. RA Mayo M.A., Robinson D.J., Jolly C.A., Hyman L.; RT "Nucleotide sequence of potato leafroll luteovirus RNA"; RL J. Gen. Virol. 70:1037-1051(1989). XX DR MD5; 8d635f47b8f58dc9555d87d9ce517897. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC4422679; 25946037. DR GOA; P17525. DR InterPro; IPR001517; Luteo_coat. DR InterPro; IPR002929; PLrV_ORF5. DR RFAM; RF01079; RF_site3. DR UniProtKB/Swiss-Prot; P0C768; RAP1_PLRV1. DR UniProtKB/Swiss-Prot; P0C769; P6_PLRV1. DR UniProtKB/Swiss-Prot; P17525; MCAPS_PLRV1. XX CC Submitted in computer readable form by M. A. Mayo on 24-Jan-1990. CC In , they suggested that the CC viral polymerase was translated by frameshift readthrough near the CC end of the 70K polypeptide, and 53K protein was translated by CC readthrough of the amber termination codon of the coat protein CC gene. In the sequence, 5' end may not be the extreme end CC (discussed in ). XX FH Key Location/Qualifiers FH FT source 1..5987 FT /organism="Potato leafroll virus" FT /strain="1" FT /mol_type="genomic RNA" FT /country="United Kingdom:Scotland" FT /isolation_source="field isolate obtained from infected FT tubers of the potato variety Cara grown in Scotland" FT /note="synonym: Potato leaf roll virus" FT /note="5' end of viral RNA" FT /db_xref="taxon:12045" FT CDS 175..918 FT /codon_start=1 FT /product="28K protein" FT /note="ORF1" FT /db_xref="GOA:P17518" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/Swiss-Prot:P17518" FT /protein_id="BAA00416.1" FT /translation="MIVLTQSGTLLFDQRFKLSKFLFVVIATGFPLLLQQASLIYGYNH FT EQIYRICRSFLHVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGLTI FT VIKLDDPTTAAAYRSELLRVSSSSYIQNAAGLSNGWGHDMEAFVRNAICLLELRERSIP FT QSGLRDLMGNYQHLVRSLLDACKVDHFVPLDFQHRSLMLNFARLYNQLDLQGRAKSFRA FT LTGFPVYVPSEDYLEGSFLQKELQE" FT CDS 308..2227 FT /codon_start=1 FT /product="70K protein" FT /note="ORF2a" FT /db_xref="GOA:P17519" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/Swiss-Prot:P17519" FT /protein_id="BAA00417.1" FT /translation="MNRFTAYAALFFMFSLCSTAKEAGFLHPAFNFRGTSTMSASSGDY FT SAAPTPLYKSWALPSSLNLTTQPPPPLTDRSYYELVQALTSKMRLDCQTVGDMTWRHLS FT EMLFASWNSVKEVSLKAASVTLWAIINIWFGLYWTLARLITLFLWTFSIEALCLILLGC FT ITSLIYKGALSLSEHLPVFLFMSPLKIIWRAAFSKRNYKNERAVEGYKGFSVPQKPPKS FT AVIELQHENGSHLGYANCIRLYSGENALVTAEHCLEGAFATSLKTGNRIPMSTFFPIFK FT SARNDISILVGPPNWEGLLSVKGAHFITADKIGKGPASFYTLEKGEWMCHSATIDGAHH FT QFVSVLCNTGPGYSGTGFWSSKNLLGVLKGFPLEEECNYNVMSVIPSIPGITSPNYVFE FT STAVKGRVFSDEAVKELEREASEAVKKLARFKSLTDKNWADDYDSDEDYGLEREAATNA FT PAEKTAQTNSAEKTAPSTSAEKTALTNKPLNGQAAPSAKTNGNSDIPDAATSAPPMDKM FT VEQIITAMVGRINLSEIEEKIVSRVSQKALQKPKQKKRGRRGGKNKQNSLPPTSTQSTS FT GAPKKEAAPQASGSAGTSRATTTPAPEAKPSGGKNSAKFTPSWRIKQQDSAGQKPDLKL FT NSKA" FT variation 479 FT /note="t in cloned cDNA from first RNA preparation ( first FT clones); c in cloned cDNA from second RNA preparation FT (second clones)" FT variation 521 FT /note="c in first clones; t in second clones" FT variation 571 FT /note="c in first clones; t in second clones" FT variation 937 FT /note="c in first clones; t in second clones" FT variation 1474 FT /note="g in first clones; a in second clones" FT variation 1611 FT /note="a in first clones; g in second clones" FT CDS <1645..3495 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2b (see comment)" FT /note="putative" FT /db_xref="GOA:P17520" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/Swiss-Prot:P17520" FT /protein_id="BAA00418.1" FT /translation="GLRSGERGCNKCARRENCSNKLSREDCSINFSRENCSNKQAFKWA FT SGTVRQNKRQLRHPRRRYKRTTNGQNGRTDHHSYGGENQSLGDRGEDSEQGVSESPAEA FT QTKEARKAWREEQAKQFTSYFNAIYKWGAQEGGCPPGFRKCGHIPRYYHPRTRGETQWG FT QKLCQVHPELADKTAGFGWPKAGSEAELQSLNLQAARWLQRAESATIPGAEARKRVIEK FT TVEAYRNCVTNAPLCSLKSKLDWAGFQQDIREAVQSLELDAGVGIPYIAYGLPAHRGWV FT EDHKLLPVLTQLTFDRLQKMSEASFEDMSAEELVQEGLCDPIRLFVKGEPHKQSKLDEG FT RYRLIMSVSLVDQLVARVLFQNQNKREISLWRSVPSKPGFGLSTDTQTAEFLECLQKVS FT GAPSVEELCANHKEYTRPTDCSGFDWSVAYWMLEDDMEVRNRLTFNNTQLTKRLRAAWL FT KCIGNSVLCLSDGTLLAQTVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDAL FT EAPNSDLEEYKTLGFKVEVGRELEFCSHIFRNPTLAVPVNTNKMLYKLIHGYNPECGNP FT EVIQNYLAAVFSVLQELRHDRELVAKLHQWLVPSATTKEH" FT variation 1755 FT /note="t in first clones; c in second clones" FT variation 1774 FT /note="t in first clones; c in second clones" FT variation 1969 FT /note="g in first clones; a in second clones" FT variation 2004 FT /note="g in first clones; a in second clones" FT variation 2020 FT /note="a in first clones; g in second clones" FT variation 2031 FT /note="c in first clones; t in second clones" FT variation 2083 FT /note="c in first clones; a in second clones" FT variation 2085 FT /note="c in first clones; t in second clones" FT variation 2118 FT /note="c in first clones; a in second clones" FT variation 2125 FT /note="c in first clones; a in second clones" FT variation 2169 FT /note="t in first clones; g in second clones" FT variation 2470 FT /note="g in first clones; a in second clones" FT variation 2565 FT /note="g in first clones; a in second clones" FT variation 2583 FT /note="g in first clones; a in second clones" FT variation 2586 FT /note="a in first clones; g in second clones" FT variation 2649 FT /note="c in first clones; t in second clones" FT variation 2898 FT /note="t in first clones; c in second clones" FT variation 3000 FT /note="t in first clones; c in second clones" FT variation 3009 FT /note="t in first clones; c in second clones" FT variation 3186 FT /note="t in first clones; c in second clones" FT variation 3282 FT /note="c in first clones; t in second clones" FT variation 3525 FT /note="a in first clones; g in second clones" FT variation 3572 FT /note="t in first clones; a in second clones" FT CDS 3693..4319 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /note="putative" FT /db_xref="GOA:P17522" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P17522" FT /protein_id="BAA00419.1" FT /translation="MSTVVVKGNVNGGVQQPRMRRRQSLRRRANRVQPVVMVTAPGQPR FT RRRRRRGGNRRSRRTGVPRGRGSSETFVFTKDNLVGNTQGSFTFGPSLSDCPAFKDGIL FT KAYHEYKITSILLQFVSEASSTSSGSIAYELDPHCKVSSLQSYVNKFQITKGGAKTYQA FT RMINGVEWHDSSEDQCRILWKGNGKSSDSAGSFRVTIKVALQNPK" FT CDS 3718..4188 FT /codon_start=1 FT /product="17K protein" FT /note="ORF4" FT /db_xref="GOA:P17524" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/Swiss-Prot:P17524" FT /protein_id="BAA00420.1" FT /translation="MSMVVYNNQECEEGNPFAGALTEFSQWLWSRPLGNPGAEDAEEEA FT IAAQEELEFPEDEAQARHSCLQRTTSWATPKEVSPSGRVYQTVRHSRMEYSRPTMSIRS FT QASYFSSSARPLPPPPVPSLMSWTPIAKYHPSSPTSTSSKLRRAAPKLIKRG" FT variation 3748 FT /note="t in first clones; g in second clones" FT variation 3930 FT /note="g in first clones; a in second clones" FT variation 3939 FT /note="a in first clones; t in second clones" FT CDS <4320..5846 FT /codon_start=1 FT /product="53K protein" FT /note="ORF5 (see comment)" FT /db_xref="GOA:Q84829" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q84829" FT /protein_id="BAA00421.1" FT /translation="VDSGSEPSPSPQPTPTPTPQKHERFIAYVGIPMLTIQARENDDQI FT ILGSLGSQRMKYIEDENQNYTKFSSEYYSQSSMQAVPMYYFNVPKGQWSVDISCEGYQP FT TSSTSDPNRGRSDGMIAYSNADSDYWNVGEADGVKISKLRNDNTYRQGHPELEINSCHF FT REGQLLERDATISFHVEAPTDGRFFLVGPAIQKTAKYNYTISYGDWTDRDMELGLITVV FT LDEHLEGTGSANRVRRPPREGHTYMASPHEPEGKPVGNKPRDETPIQTQERQPDQTPSD FT DVSDAGSVNSGGPTESLRLEFGVNSDSTYDATVDGTDWPRIPPPRHPPEPRVSGNSRTV FT TDFSSKADLLENWDAEHFDPGYSKEDVAAATIIAHGSIQDGRSMLEKREENVKNKTSSW FT KPPSLKAVSPAIAKLRSIRKSQPLEGGTLNKDATDGVSSIGSGSLTGGTLKRKATIEER FT LLQTLTTEQRLWYENFKKTNPPAATQWLFEYQPPPQVDRNIAEKPFQGRK" FT variation 4501 FT /note="t in first clones; g in second clones" FT variation 4510 FT /note="g in first clones; c in second clones" FT variation 4511 FT /note="t in first clones; a in second clones" FT variation 4697 FT /note="t in first clones; c in second clones" FT variation 4817 FT /note="t in first clones; c in second clones" FT variation 4883 FT /note="c in first clones; t in second clones" FT variation 4886 FT /note="t in first clones; c in second clones" FT variation 4895 FT /note="t in first clones; c in second clones" FT variation 4898 FT /note="c in first clones; t in second clones" FT variation 5038 FT /note="c in first clones; t in second clones" FT variation 5042 FT /note="g in first clones; a in second clones" FT variation 5071 FT /note="a in first clones; g in second clones" FT variation 5199 FT /note="c in first clones; t in second clones" FT variation 5215 FT /note="g in first clones; a in second clones" FT variation 5247 FT /note="t in first clones; c in second clones" FT variation 5339 FT /note="c in first clones; t in second clones" FT variation 5341 FT /note="c in first clones; t in second clones" FT variation 5352 FT /note="t in first clones; c in second clones" FT variation 5393 FT /note="c in first clones; t in second clones" FT variation 5426 FT /note="t in first clones; c in second clones" FT variation 5477 FT /note="c in first clones; t in second clones" FT variation 5490 FT /note="a in first clones; g in second clones" FT variation 5495 FT /note="t in first clones; c in second clones" FT variation 5511 FT /note="a in first clones; t in second clones" FT variation 5741 FT /note="t in first clones; g in second clones" FT variation 5767 FT /note="c in first clones; t in second clones" XX SQ Sequence 5987 BP; 1665 A; 1514 C; 1447 G; 1361 T; 0 other; ctttatgata ctatgcaaat tgtgctacca gaaatccgta cagtatgcgt aggattagcc 60 gcttcaatgg gatctgttat cctggtcgga ggagaaatta ccaaacgtct agcattcccg 120 agaaattgca gctttagcgc ataaactcta cactcattgc aaacgttata gcatatgatt 180 gtattgaccc agtctggaac cttgcttttt gaccaaagat ttaaactctc aaagtttctc 240 ttcgttgtca ttgcaacagg ctttcctctt ctcctgcagc aagcgagctt aatttacggc 300 tataatcatg aacagattta ccgcatatgc cgctcttttc ttcatgttct ccctttgctc 360 aactgcaaaa gaggcaggat ttctacatcc ggccttcaac ttccgaggca cctccactat 420 gagtgcctcg agtggggatt actctgcggc acccaccccg ctatacaaat cgtgggcctt 480 accatcgtca ttaaacttga cgacccaacc accgccgccg cttacagatc ggagctacta 540 cgagttagtt caagctctta catccaaaat gcggctggat tgtcaaacgg ttggggacat 600 gacatggagg catttgtcag aaatgctatt tgcctcctgg aactccgtga aagaagtatc 660 cctcaaagcg gcctccgtga ccttatgggc aattatcaac atttggttcg gtctctattg 720 gacgcttgca aggttgatca ctttgttcct ctggactttc agcatagaag ccttatgctt 780 aattttgctc ggttgtataa ccagcttgat ctacaagggc gcgctaagtc tttcagagca 840 cttaccggtt ttcctgttta tgtcccctct gaagattatt tggagggcag ctttctccaa 900 aaggaattac aagaatgaga gggctgtgga aggatacaaa gggttttcgg tcccacagaa 960 accgccaaag tctgccgtaa ttgaactaca acatgaaaac ggcagccatc tcgggtacgc 1020 gaactgcatt cgcttgtaca gtggagagaa cgccttggtg acagctgaac actgtctaga 1080 aggcgctttc gcaacgtcgt tgaaaactgg aaacaggatt ccgatgtcga ctttctttcc 1140 cattttcaaa agtgcccgta atgatatctc catactagta ggtccaccca actgggaagg 1200 tctactatca gtcaaaggag ctcatttcat tacagctgac aaaatcggca aaggtcctgc 1260 ctctttctac actcttgaga aaggggagtg gatgtgccat agtgccacca tagatggagc 1320 ccatcaccag ttcgtgtctg ttttatgcaa cactggaccc ggatattccg gaacagggtt 1380 ttggtcttca aagaatctgc ttggtgtgct taaaggcttc ccactggaag aggagtgtaa 1440 ctacaatgtt atgtctgtta taccctcgat cccgggaatc acttccccaa attatgtgtt 1500 tgagtcgacc gccgtaaaag gccgcgtctt ctcggatgaa gctgtgaaag agctagagcg 1560 ggaagcatcc gaagccgtca agaagcttgc cagatttaaa tcacttaccg acaagaactg 1620 ggctgatgat tatgactccg atgaggatta cggtctggag agagaggctg caacaaatgc 1680 gcccgcagag aaaactgctc aaacaaactc agcagagaag actgctccat caacttcagc 1740 agagaaaact gctctaacaa acaagccttt aaatgggcaa gcggcaccgt ccgccaaaac 1800 aaacggcaac tccgacatcc ccgacgccgc tacaagcgca ccaccaatgg acaaaatggt 1860 cgaacagatc atcacagcta tggtggggag aatcaatctc tcggagatag aggagaagat 1920 agtgagcagg gtgtctcaga aagccctgca gaagcccaaa caaaagaagc gcggaaggcg 1980 tggagggaag aacaagcaaa acagtttacc tcctacttca acgcaatcta caagtggggc 2040 gcccaagaag gaggctgccc cccaggcttc aggaagtgcg ggcacatccc gcgctactac 2100 cacccccgca ccagaggcga aacccagtgg gggcaaaaac tctgccaagt tcaccccgag 2160 ctggcggata aaacagcagg attcggctgg ccaaaagccg gatctgaagc tgaactccaa 2220 agcctgaatc tacaggctgc caggtggctc caacgcgcgg agtcagccac tatccctggc 2280 gcggaagcaa gaaagcgcgt gattgagaaa acagttgagg catacagaaa ttgtgtaact 2340 aacgccccac tgtgctccct taaatccaaa ctggattggg ctggctttca acaagatatc 2400 cgtgaagcag tccagtccct tgagctagac gctggtgtag gcattcccta tatcgcgtat 2460 ggcctccccg cacaccgagg atgggttgag gaccataagc ttctcccagt gctcactcag 2520 ctgacctttg accgactaca gaagatgtcg gaggccagct ttgaggatat gagcgcagaa 2580 gagctagttc aagaagggct ctgtgatcct atcagactat ttgtcaaagg agagccccac 2640 aaacagagca aactcgatga aggccgctac cgcctcatca tgtctgtttc cttggtggat 2700 caactggtag cccgggttct gttccaaaat cagaacaaaa gggaaatttc cctgtggagg 2760 tctgtgcctt ccaaacccgg ttttggcctt tcaactgaca ctcaaactgc tgaattcttg 2820 gagtgtcttc aaaaggtgtc tggagcgcca tctgtggaag aattgtgtgc aaatcacaag 2880 gagtacacgc gcccaactga ctgttccggt ttcgactggt cagtcgcgta ttggatgctg 2940 gaggatgata tggaggtgag aaatcgcctg acatttaata acacccagct caccaagcgt 3000 cttcgggctg cctggttgaa gtgcatagga aactccgtcc tgtgcctgtc cgatggcact 3060 ttacttgccc aaactgttcc cggtgtgcaa aagagcggaa gttacaatac aagttcctcc 3120 aactctagaa tccgggttat ggctgcctat cactgtggcg ccgactgggc aatggccatg 3180 ggggatgatg ctctcgaagc ccccaactcc gacctggagg agtataaaac actaggtttc 3240 aaagtcgagg taggtcgaga actcgaattc tgttcacaca tcttcagaaa tccgaccctc 3300 gccgttccgg tcaacaccaa caaaatgctt tacaagttga tccatggtta taatccggaa 3360 tgtggcaatc cagaagtgat tcaaaactat ctggctgcag tattctctgt gctgcaggaa 3420 ctccgacacg atcgtgagct cgttgccaag ctccaccagt ggttggttcc gagtgccacc 3480 acaaaagaac actgaaggag ctcactaaaa ctagccaagc atacacgagt tgcaagcatt 3540 ggaagttcaa gcctcgttac atcaaccgga ctaaatagat tataaattct tagcgggatt 3600 tgctttagga ttctcatccg caatcccatt ttcagtagcc ggtttatatt ttgtttacct 3660 aaagatttcc tcccacgtgc gatcaattgt taatgagtac ggtcgtggtt aaaggaaatg 3720 tcaatggtgg tgtacaacaa ccaagaatgc gaagaaggca atcccttcgc aggcgcgcta 3780 acagagttca gccagtggtt atggtcacgg cccctgggca acccaggcgc cgaagacgca 3840 gaagaggagg caatcgccgc tcaagaagaa ctggagttcc ccgaggacga ggctcaagcg 3900 agacattcgt gtttacaaag gacaacctcg tgggcaacac ccaaggaagt ttcaccttcg 3960 ggccgagtct atcagactgt ccggcattca aggatggaat actcaaggcc taccatgagt 4020 ataagatcac aagcatctta cttcagttcg tcagcgaggc ctcttccacc tcctccggtt 4080 ccatcgctta tgagttggac ccccattgca aagtatcatc cctccagtcc tacgtcaaca 4140 agttccaaat tacgaagggc ggcgccaaaa cttatcaagc gcggatgata aacggggtag 4200 aatggcacga ttcttctgag gatcagtgcc ggatactgtg gaagggaaat ggaaaatctt 4260 cagattccgc aggatccttc agagtcacca tcaaggtagc tttgcaaaac cccaaatagg 4320 tagactccgg atcagagcct agtccaagcc cacaaccaac acccactcca actccccaga 4380 agcacgagcg atttattgct tacgttggca tacctatgct aaccattcag gccagggaga 4440 acgacgacca aatcatattg ggttccttag ggagccaaag gatgaaatat atagaggacg 4500 agaaccagaa ttatacaaag tttagttctg agtattactc tcaatcgagc atgcaagccg 4560 tccctatgta ttacttcaat gtcccgaaag ggcaatggtc agtcgacatc agctgcgaag 4620 ggtatcaacc cactagcagc acctcggatc caaaccgggg taggagtgac gggatgatcg 4680 cgtattcaaa cgcggattcc gattattgga atgttggtga agcggatggt gtcaaaattt 4740 cgaagctacg caacgataac acctaccgcc aaggtcaccc agaacttgaa attaactcgt 4800 gtcattttcg cgagggtcaa ctccttgaac gggacgctac aattagcttc cacgttgaag 4860 cgcctactga tgggcgattc ttccttgttg gtcctgccat ccagaaaacc gcaaagtata 4920 actatactat ctcatacggt gactggacgg accgagacat ggaactgggg ctgatcaccg 4980 tggtgcttga tgaacattta gaaggcactg gttcggctaa cagagtgcgg cggcccccac 5040 gggagggcca cacctatatg gcctcgccgc acgaaccgga aggaaaaccg gttggaaata 5100 aaccaaggga cgaaaccccg atacaaacgc aggaaagaca acctgatcaa actccgtctg 5160 acgacgtatc cgatgctggt tcggtaaaca gcggcggccc aactgagtcg ctgcgattgg 5220 agttcggggt aaactcagat agtacctacg atgctacagt cgatggtaca gactggccca 5280 gaattcctcc accaaggcac ccacctgaac ctagagtttc cggcaattca agaactgtca 5340 ctgacttttc ttcgaaagcc gatctattgg agaattggga tgccgaacac ttcgaccctg 5400 gttattccaa agaagatgtc gctgctgcta ctattatagc gcacggcagt attcaagatg 5460 ggcgaagtat gttggagaag agagaggaaa atgtcaagaa caaaacctcc tcctggaagc 5520 ccccgtcact taaagcggtg agcccagcca tagccaaatt gcgctcgatt cgcaaatccc 5580 aaccccttga gggagggacc cttaataaag acgccactga tggtgtctca tctattggca 5640 gtggttctct aacaggtggc acgcttaaga ggaaggcaac tattgaagaa cgtttactgc 5700 agaccttaac aactgaacaa aggctgtggt acgagaattt taagaaaact aaccctccag 5760 ctgctaccca atggctgttt gaatatcagc cacctcccca agtagataga aacatagctg 5820 aaaagccatt ccaagggagg aaatgagtcg actcacgact taaaactgag tgtccgccgg 5880 acattaagcg gaacgaaagc cgaaaggtga ttaggctctc aacgtctgct agagaccgtc 5940 gaaagacgcg actgtgtagc caggatcctc ttacagggtt gtgtagt 5987 //