ID D00461; SV 1; linear; genomic RNA; STD; VRL; 3552 BP. XX AC D00461; XX DT 11-APR-1990 (Rel. 23, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 4) XX DE Potato virus S gene for Replicase, 25K protein, 12K protein, 42K protein, DE 7K protein, coat protein, 11K protein, complete and partial cds, DE 3'-terminal region. XX KW coat protein; replicase. XX OS Potato virus S OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-3552 RX PUBMED; 2732711. RA Mackenzie D.J., Tremaine J.H., Stace-Smith R.; RT "Organization and interviral homologies of the 3'-terminal portion of RT potato virus S RNA"; RL J. Gen. Virol. 70:1053-1063(1989). XX DR MD5; ac5a1f88d695d7c970df15f803e9bc7c. XX CC Translation of the largest (42K) potential ORF (position 2045 to CC 3172) from an internal ATG codon (position 2291) would yield a 33K CC polypeptide, the sequence of which has been confirmed to be that of CC the coat protein. XX FH Key Location/Qualifiers FH FT source 1..3552 FT /organism="Potato virus S" FT /strain="Andean(Peruvian)" FT /mol_type="genomic RNA" FT /note="27 bp upstream of EcoRI site." FT /note="clones:pVS[49,30,20,92,52,59,91,44,58,94,45,64,57, FT 41,66,65 and 61]" FT /db_xref="taxon:12169" FT CDS <1..1064 FT /codon_start=3 FT /product="Replicase" FT /db_xref="GOA:P22657" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:P22657" FT /protein_id="BAA00350.1" FT /translation="MYGPFLLKEFLNDVPLKPMHNTRMMAEAKFDFEEKKTQKSAATIE FT NHSNRSCRDWLADMGMVFSKSQLCTKFDNRFRDAKAAQTIVCFQHSVLCRFAPYMRYIE FT KKLNEVLPATFYIHSGKGLEELNKWVIESKFEGVCTESDYEAFDASQDQYIVAFELALM FT RYLGLPNDLIEDYKYIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYKLKGD FT ERICFAGDDMCANRALFIKDTHEGFLKKLKLKAKVDRTNRPSFCGWSLSSDGIYKKPQL FT VFERLCIAKETANLANCIDNYAIEVSYAYKLGERIKERMSEEELEAFYNCVRVIIKHKH FT LLKSEIRSVYEEV" FT CDS 1101..1784 FT /codon_start=1 FT /product="25K protein" FT /db_xref="GOA:P16650" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/Swiss-Prot:P16650" FT /protein_id="BAA00351.1" FT /translation="MDVFLQVLNKYKFERVSSTLNKPIVVHSVPGAGKSSAIRELLKLD FT SRFECITRGRPDIPNLEGAFIKAERSGESKLLLVDEYIEGPIPEDAFAIFADPLQSTAV FT SPHRAHFIKTLSHRFGKCTDSLLRDLGWDVQAEGQDSVQIADIFTVDPRETIVYFEPEV FT GELLRSHGVEASCIGEVRGATFEHVTFVTSENSPLIDKASAFQCLTRHTKSLLILCPDA FT TYTAA" FT CDS 1762..2088 FT /codon_start=1 FT /product="12K protein" FT /db_xref="GOA:P16651" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/Swiss-Prot:P16651" FT /protein_id="BAA00352.1" FT /translation="MPLTPPPNYTGLYIAAALGVSLAAVVALFTRSTLPIVGDSQHNLP FT HGGRYRDGTKAIDYFKPTKLNSVEPGNYWYTQPWLLVILLVALICLSGRHAQCCPRCNR FT VHSA" FT CDS 2045..3172 FT /codon_start=1 FT /product="42K protein" FT /note="containing coat protein ORF; see comment" FT /db_xref="GOA:Q9WK32" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:Q9WK32" FT /protein_id="BAA00353.1" FT /translation="MLNAAQDATECTVLNSVLLGLRSRLVRSETRKYKLRFANHWGISQ FT AGQLRAHKRSSGGRATKAVETPLGSQVKARIYSLTARMPPKPDPSSSGEAPQAMQPAPP FT PRAEGHMYAQPEGPGQNEEAMLEQRLIRLIELMATKRHNSTLSNISFEIGRPSLEPTPE FT MRRNPENPYSRFSIDELFKMEIRSVSNNMANTEQMAQITADIAGLGVPTEHVAGVILKV FT VIMCASVSSSVYLDPAGTVEFPTGAVPLDSIIAIMKNRAGLRKVCRLYAPVVWNYMLVQ FT NRPPSDWQAMGFQWNARFAAFDTFDYVTNGAAIQPVEGLIRRPTPEETIAHNAHKSMAI FT DKSNRNERLANTNVEYTGGMLGAEIVRNHRNAINQ" FT CDS 2052..2249 FT /codon_start=1 FT /product="7K protein" FT /db_xref="GOA:P16652" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/Swiss-Prot:P16652" FT /protein_id="BAA00354.1" FT /translation="MLPKMQPSAQCLIVFSLAFVLGWYVLRPGNTSCVLLITGESVRLV FT NCELTKDLVEAVLLRPLKHL" FT CDS <2291..3172 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:P16653" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/Swiss-Prot:P16653" FT /protein_id="BAA00355.1" FT /translation="MPPKPDPSSSGEAPQAMQPAPPPRAEGHMYAQPEGPGQNEEAMLE FT QRLIRLIELMATKRHNSTLSNISFEIGRPSLEPTPEMRRNPENPYSRFSIDELFKMEIR FT SVSNNMANTEQMAQITADIAGLGVPTEHVAGVILKVVIMCASVSSSVYLDPAGTVEFPT FT GAVPLDSIIAIMKNRAGLRKVCRLYAPVVWNYMLVQNRPPSDWQAMGFQWNARFAAFDT FT FDYVTNGAAIQPVEGLIRRPTPEETIAHNAHKSMAIDKSNRNERLANTNVEYTGGMLGA FT EIVRNHRNAINQ" FT CDS 3169..3450 FT /codon_start=1 FT /product="11K protein" FT /db_xref="GOA:P16654" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/Swiss-Prot:P16654" FT /protein_id="BAA00356.1" FT /translation="MKAERLEMLLLCVYRLGYILPVDVCIKIISVAQVSVQGRSTYSCK FT RRARSIGRCWRCYRVYPPVCNSKCDNRTCRPGISPNFKVVTFIRGWSN" FT polyA_site 3552 FT /note="poly(A) site" XX SQ Sequence 3552 BP; 976 A; 747 C; 920 G; 909 T; 0 other; agatgtatgg gccatttcta cttaaagaat tcctcaacga tgtgccactt aaacctatgc 60 acaacacgcg catgatggct gaagcgaagt ttgacttcga ggagaagaaa acccagaaaa 120 gtgcagcaac cattgagaat catagtaata ggtcttgtag ggattggctg gccgacatgg 180 gcatggtgtt ttcaaagtct caactctgca ccaagtttga caacaggttc agggatgcaa 240 aggctgcgca gaccatcgtt tgctttcagc acagcgttct gtgccgcttc gccccataca 300 tgaggtacat agagaagaag cttaatgagg tgttgcctgc cacattttac atccactcag 360 gcaagggctt ggaagagttg aacaaatggg tgatagaatc caaatttgag ggagtgtgta 420 cagagtctga ttatgaagct tttgatgcta gccaagatca gtacattgtg gcgtttgaat 480 tagcgctaat gaggtacttg ggcctgccca atgatctcat agaggactac aagtacatca 540 agacacatct tggctctaaa ttgggaaatt ttgcaataat gcgcttctct ggtgaggcaa 600 gcacattctt attcaatacc atggccaaca tgctgttcac cttcttgagg tacaagttga 660 agggagatga aaggatttgc tttgctgggg atgatatgtg tgcaaataga gctctgttca 720 tcaaggatac gcatgagggc ttcctcaaga agctcaagct gaaggccaag gtggatagaa 780 caaacagacc gagcttctgc gggtggagtt tgagctctga tgggatctac aaaaagccgc 840 aacttgtctt tgagaggctc tgtatagcaa aagagaccgc taatttagcc aattgcatag 900 ataattatgc gatcgaggtg tcctatgcct acaagcttgg ggagaggatc aaagagcgta 960 tgtcagagga ggaactagag gctttctaca actgcgtgag ggttatcatc aaacacaagc 1020 atctgcttaa gtctgaaatt cgcagtgtgt atgaggaggt ttgatagctt aggtaatcag 1080 cttagtagta ttgaatatat atggatgtgt ttttgcaagt tttgaataaa tataagtttg 1140 agcgtgttag tagtactcta aataaaccaa tagttgttca tagtgttcca ggtgctggta 1200 agagttccgc gatcagggaa ttactgaagt tagatagtag gtttgagtgc attacccgtg 1260 gccggccaga cattcccaat ctagagggag ctttcatcaa ggccgaacgt agtggtgaga 1320 gtaagctgtt actggtagat gagtacatag aagggcccat tccagaggac gcctttgcaa 1380 tcttcgcaga tccgcttcag agcacagccg tcagtccaca cagagcgcat ttcatcaaaa 1440 cactaagcca tcgctttggc aagtgtactg attcactctt gagagatttg ggttgggacg 1500 tgcaagctga aggtcaggat tcagttcaaa tcgctgatat cttcacggtc gaccccagag 1560 aaacaattgt ttactttgag ccggaagttg gtgagttgct gaggagtcac ggagtcgagg 1620 caagctgcat cggtgaggtg cgtggggcca cttttgagca cgtaacgttt gtcacatctg 1680 aaaatagccc attgattgat aaggcctctg catttcagtg cttaacgagg cacaccaaga 1740 gcttactcat attgtgccct gatgccactt acaccgccgc ctaattacac agggttatac 1800 attgcggcag cgcttggtgt atctcttgct gctgtagttg ccttattcac aagaagtact 1860 ttgccgattg taggggactc acagcacaac ctcccacacg gggggcggta ccgtgacggc 1920 acaaaggcca tagactactt caagcccaca aaattgaatt ctgtggagcc gggcaattac 1980 tggtacactc aaccttggtt gttggttata cttttggtag cgctcatctg tctatccggg 2040 cgtcatgctc aatgctgccc aagatgcaac cgagtgcaca gtgcttaata gtgttctcct 2100 tggccttcgt tctaggttgg tacgttctga gaccaggaaa tacaagttgc gttttgctaa 2160 tcactgggga atcagtcagg ctggtcaatt gcgagctcac aaaagatcta gtggaggccg 2220 tgctactaag gccgttgaaa cacctttagg ttcacaggta aaagctcgaa tatacagtct 2280 cacagcaaga atgccgccta aaccagatcc atctagctca ggggaagcac cacaagcgat 2340 gcaacctgca ccaccaccgc gcgcagaagg gcacatgtat gcgcaaccag aagggccagg 2400 gcaaaacgag gaagccatgc tggagcaaag actcatcagg ttgattgagc tcatggctac 2460 gaagaggcac aactcgacat tgagcaacat ctcctttgaa ataggtaggc ccagtctaga 2520 accgacccct gagatgagga ggaatccgga aaatccgtac tctcggttct caatcgacga 2580 gctgttcaag atggaaatcc gatcggtctc taacaatatg gccaacactg agcagatggc 2640 acagatcacc gcggatattg cagggctcgg cgtccccaca gagcatgtgg cgggggttat 2700 actgaaggtc gtaattatgt gcgcaagcgt gagcagttct gtctacttag accctgcagg 2760 gactgttgag ttccctactg gcgcagtgcc actggattcc ataatcgcaa tcatgaaaaa 2820 ccgtgctggg ttgaggaagg tgtgtaggtt gtatgctccg gtcgtttgga attatatgct 2880 tgttcagaat aggccacctt cagattggca ggccatgggg tttcaatgga atgcacgttt 2940 cgccgctttt gacacatttg attatgtgac taacggcgct gcaatccagc ctgttgaggg 3000 gctcatccgt aggccgacgc ctgaagagac aatagctcat aacgctcaca agagcatggc 3060 tattgataag tcgaacagaa atgaaaggtt ggctaacacc aacgttgagt atactggggg 3120 catgctcggt gctgagattg tgcgtaatca tcggaatgca ataaaccaat gaaagcggaa 3180 cgtttagaaa tgttactgtt gtgtgtttac aggctgggtt atattttacc agtcgatgtg 3240 tgtattaaaa taataagcgt agcgcaggtc agtgtccaag gtcgttcaac ctactcatgt 3300 aagcgaaggg cccgcagcat tggacgatgc tggcgttgct accgtgtcta tccaccagtt 3360 tgtaattcta agtgtgataa taggacatgc cgtccaggca ttagtcccaa ctttaaagta 3420 gtgactttta ttcggggttg gagtaactga ggtgatacca cccgggatga aaagtctgag 3480 tttcgcataa agcttaaata atatataagt gtgcaactat aaagaaaata tgtttttaaa 3540 atattttagc at 3552 //