ID D00385; SV 1; linear; genomic RNA; STD; VRL; 2217 BP. XX AC D00385; XX DT 11-APR-1990 (Rel. 23, Created) DT 07-JUL-2003 (Rel. 76, Last updated, Version 4) XX DE Cucumber mosaic virus genomic RNA 3, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2217 RX PUBMED; 2732698. RA Hayakawa T., Mizukami M., Nakajima M., Suzuki M.; RT "Complete nucleotide sequence of RNA3 from cucumber mosaic virus (CMV) RT strain O: comparative study of nucleotide sequences and amino acid RT sequences among CMV strains O, Q, D and Y"; RL J. Gen. Virol. 70:499-504(1989). XX DR MD5; f500f5d46073088f283152e5053e74bc. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC112760; 10400773. DR EuropePMC; PMC136033; 11884564. DR RFAM; RF01084; TLS-PK3. XX CC Comparison of nucleotide sequences and amino acid sequences of CMV CC strains O, Q, D and Y indicated the close relationship between CC these strains. XX FH Key Location/Qualifiers FH FT source 1..2217 FT /organism="Cucumber mosaic virus" FT /strain="O" FT /mol_type="genomic RNA" FT /db_xref="taxon:12305" FT misc_feature 33..37 FT /note="identical sequence to RNA 4" FT misc_feature 50..55 FT /note="complementary region to the 18S rRNA." FT misc_feature 59..66 FT /note="identical sequence to RNA 4" FT CDS 123..962 FT /codon_start=1 FT /product="3A protein" FT /db_xref="GOA:P16491" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/Swiss-Prot:P16491" FT /protein_id="BAA00296.1" FT /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH FT WMRADSAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK FT SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL" FT misc_feature 1185 FT /note="5' terminus of subgenomic RNA 4" FT misc_feature 1223..1227 FT /note="identical sequence to RNA 4" FT misc_feature 1241..1246 FT /note="complementary region to the 18S rRNA." FT misc_feature 1249..1256 FT /note="identical sequence to RNA 4" FT CDS 1261..1917 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:P16489" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="UniProtKB/Swiss-Prot:P16489" FT /protein_id="BAA00297.1" FT /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT FT LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAAFGVQAN FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSRVLPV" XX SQ Sequence 2217 BP; 525 A; 522 C; 521 G; 649 T; 0 other; gtaatcttac cactcgtgtg tgtgcgtgtg tgtgtgtcga gtcgtgttgt ccgcacattt 60 gagtcgtgct gtccgcacat atatttttct ttctttgtac agtgtgttag atttcccgag 120 gcatggcttt ccaaggtacc agtaggactt taactcaaca gtcctcagcg gctacgtctg 180 acgatcttca aaagatatta tttagccctg aagccattaa gaaaatggct actgagtgtg 240 acctaggccg gcatcattgg atgcgcgctg atagtgctat ttcagtccgg cccctcgttc 300 ccgaagtaac ccacggtcgt attgcttcct tctttaagtc tggatatgat gttggtgaat 360 tatgctcaaa aggatatatg agcgtccctc aagtattatg tgctgttact cgaacagttt 420 ccactgatgc tgaagggtct ttgagaattt acttagctga tctaggcgac aaggagttat 480 ctcccataga tgggcaatgc gtttcattac ataaccatga tcttcccgct ttggtgtcct 540 tccaaccgac gtatgattgt cctatggaaa cagttgggaa tcgtaagcgg tgttttgctg 600 ttgttatcga aagacatggt tatattgggt ataccggtac cacagctagc gtgtgtagta 660 attggcaagc aaggttttca tctaagaata acaactacac tcatatcgca gctgggaaga 720 ctctagtact gcctttcaac agattagctg agcaaacaaa accgtcagct gttgctcgcc 780 tgttgaagtc gcaattgaac aacattgaat cttcgcaata tctgttaaca aacgcgaaga 840 tcaatcagaa tgcgcgcagt gagtccgagg aattaaatgt tgagagccct cccgccgcaa 900 tcgggagttc ttccgcgtcc cgctccgaag ccttcagacc gcaggtggtt aacggtcttt 960 agcactttgg tgcgtattag tatataagta ttatgagtct gtacataata ttatatctat 1020 agtgtcctgt gtgagttgat acagtagacg tctgtgacgc gatgccgtgt tgagaaggga 1080 acacatctgg ttttagtaag cctacatcat agttttgagg ttcaattcct cttactccct 1140 gttgagcccc ttactttctc atggatgctt ctccgcgaga ttgcgttatt gtctactgat 1200 tgtataaaga gtgtgtgtgt gctgtgtttt ctcttttacg tcgtagaatt gagtcgagtc 1260 atggacaaat ctgaatcaac cagtgctggt cgcaaccgtc gacgtcgtcc gcgtcgtggt 1320 tcccgctccg ccccctcctc cgcggatgct aactttagag tcttgtcgca gcagctttcg 1380 cgacttaata agacgttagc agctggtcgt ccaactatta accacccaac ctttgtaggg 1440 agtgaacgct gtaaacctgg gtacacgttc acatctatta ccctaaagcc accaaaaata 1500 gaccgtgggt cttattacgg taaaaggttg ttattacctg attcagtcac ggaatatgat 1560 aagaaacttg tttcgcgcat tcaaattcga gttaatcctt tgccgaaatt cgattctacc 1620 gtgtgggtga cagtccgtaa agttcctgcc tcctcggact tatccgttgc cgccatctct 1680 gctatgtttg cggacggagc ctcaccggta ctggtttatc agtacgccgc atttggagtc 1740 caagctaaca acaaattgtt gtatgatctt tcggcgatgc gcgctgatat aggtgacatg 1800 agaaagtacg ccgtcctcgt gtattcaaaa gacgatgcgc tcgagacgga cgagctagta 1860 cttcatgttg acatcgagca ccaacgcatt cccacatcta gagtactccc agtctgattc 1920 cgtgttccca gaaccctccc tccgatttct gtggcgggag ctgagttggc agttctgcta 1980 taaactgtct gaagtcacta aacgttttac ggtgaacggg ttgtccatcc agcttacggc 2040 taaaatggtc agtcgtggag aaatccacgc cagcagattt acaaatctct gaggcgcctt 2100 tgaaaccatc tcctaggttt tttcggaagg acttcggtcc gtgtacctct agcacaacgt 2160 gctagtctta gggtacgggt gcccccccac tttcgtgggg gctccaaaag gagacca 2217 //