ID D00356; SV 1; linear; genomic RNA; STD; VRL; 3357 BP. XX AC D00356; XX DT 11-APR-1990 (Rel. 23, Created) DT 21-JUN-2008 (Rel. 96, Last updated, Version 11) XX DE Cucumber mosaic virus segment RNA 1, 5'end of virion, strain: Fny. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3357 RX PUBMED; 2732682. RA Rizzo T.M., Palukaitis P.; RT "Nucleotide Sequence and Evolutionary Relationships of Cucumber Mosaic RT Virus (CMV) Strains: CMV RNA1"; RL J. Gen. Virol. 70:1-11(1989). XX DR MD5; ce47f92343e3de3d8afd8586b9694520. DR EuropePMC; PMC110906; 11044076. DR EuropePMC; PMC136033; 11884564. DR EuropePMC; PMC1781478; 17257060. DR EuropePMC; PMC416521; 15163757. DR EuropePMC; PMC5096307; 27814723. DR RFAM; RF01084; TLS-PK3. XX CC Submitted in computer readable form by: CC T.M.Rizzo CC Cornell University CC Ithaca CC New York CC The nucleotide sequence of Fny-CMV RNA1 was compared at both the CC nucleic acid and protein levels with the corresponding sequence of CC Q-CMV RNA1. XX FH Key Location/Qualifiers FH FT source 1..3357 FT /organism="Cucumber mosaic virus" FT /segment="RNA 1" FT /strain="Fny" FT /mol_type="genomic RNA" FT /note="5'end of virion RNA 1" FT /db_xref="taxon:12305" FT CDS 95..3076 FT /codon_start=1 FT /note="993 aa" FT /note="open reading frame" FT /db_xref="GOA:P17769" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P17769" FT /protein_id="BAA00264.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSETEDVTPLVGKLNSTVFSRVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKILAAQKAEKLAEKLAQPVSEVSDSPETSSQTPDDTADVCGREREVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELYIVNSECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT VARA" FT misc_difference 2207..2208 FT /replace="gg" FT /citation=[1] XX SQ Sequence 3357 BP; 844 A; 744 C; 816 G; 953 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaacta ccctttgaaa 60 acctctcttt cttaatcttt tctttgtaat tcctatggcg acgtcctcgt tcaacatcaa 120 tgaattggta gcctcccacg gcgataaagg actactcgcg accgccctcg ttgataagac 180 agctcatgag cagctcgagg agcaattaca gcatcaacgt agaggccgta aggtctacat 240 ccggaacgtt ttgggtgtaa aggattccga ggtcatccgg aatcggtatg gaggaaagta 300 cgacctccat cttacccagc aggagtttgc tccccacggc ctagctggtg ccctccgctt 360 gtgtgaaact ctcgattgtc tagactcttt cccttcatca ggtctgcggc aggacctcgt 420 cttagacttc ggaggaagtt gggtcacaca ttacctccgc ggacataacg tacactgttg 480 ttccccttgt ttgggtatcc gcgataagat gcgccatgcg gaacgcttaa tgaacatgcg 540 caagatcatc ttgaacgatc cacaacagtt cgatggtcgg cagccggatt tctgcactca 600 accggctgcg gattgcaaag tacaagccca ctttgctata tctattcatg gaggttatga 660 tatgggcttt agaggattat gtgaagcgat gaatgctcac ggaaccacta ttttgaaggg 720 aacgatgatg ttcgatggtg cgatgatgtt tgacgaccaa ggtgtaatac ccgaacttaa 780 ttgtcagtgg aggaagatca ggagtgcttt ctccgaaact gaagacgtca caccactggt 840 tggtaagctt aattccacag ttttctcccg cgtgcggaag ttcaagacga tggtagcttt 900 tgatttcatc aacgagtcta ctatgtctta tgttcatgat tgggagaata taaaatcttt 960 tcttacggac cagacttatt cgtaccgagg gatgacttac ggtatcgaac gctgcgttat 1020 ccacgctggt attatgacgt acaagattat cggtgtacct gggatgtgcc cacccgaact 1080 cattcgacat tgtatttggt tcccctctat taaagactat gttggtctaa agatccccgc 1140 gtcgcaggat ttggttgagt ggaaaacagt gcggatttta acgtcaacat tacgtgagac 1200 tgaagagatt gctatgaggt gttataatga taagaaagcg tggatggaac agttcaaggt 1260 tatcctaggt gttctatccg cgaaatcatc taccattgtt attaatggta tgtccatgca 1320 atctggcgag cgaatagaca ttaatgatta tcactacatc ggtttcgcca ttcttcttca 1380 cacaaaaatg aagtacgaac aacttggaaa aatgtatgat atgtggaatg cttcgagtat 1440 ttcgaagtgg tttgccgcgt tgactcgtcc gctgcgtgtg tttttctcca gtgttgttca 1500 cgcactattc ccgactttga gaccccgcga ggaaaaagaa tttttgatca agctctccac 1560 cttcgtgact tttaatgaag agtgctcatt tgacggtgga gaggaatggg acgtgatatc 1620 atccgctgca tacgttgcta cgcaggctgt taccgatggg aagattttgg ctgcgcagaa 1680 agccgagaag cttgctgaga agcttgcaca acccgtgagt gaggtatcgg acagtcctga 1740 gacgtcatct caaacgcctg atgatactgc tgatgtttgt ggaagggagc gagaggtttc 1800 ggaactcgac tccctatcag ctcagacacg ttcccccatc actagagttg ctgaaagggc 1860 tactgctatg ttagagtatg ccgcttatga gaaacaattg cacgacacta cagtgtctaa 1920 tttaaaacgt atttggaaca tggcgggcgg tgatgacaaa agaaactccc tcgagggtaa 1980 tttgaagttt gttttcgata cgtactttac cgttgatcct atggtgaaca ttcatttctc 2040 cacgggtcgg tggatgcgtc ctgtgcccga gggtattgtt tattctgtcg gttataatga 2100 acgcggttta ggtccgaagt ctgatggaga gctttacatt gtcaatagtg aatgcgtgat 2160 ctgtaacagt gaatctttat ccactgtcac gcgttctctt caagctccaa ccgggaccat 2220 tagtcaagtt gacggagttg ctggttgtgg gaaaaccacg gcaattaaat ccatttttga 2280 gccgtccact gacatgatcg ttaccgcgaa caagaagtcc gcccaagatg tacgtatggc 2340 acttttcaaa tcgtcggatt ccaaagaagc ttgcaccttt gttcgaacag ccgattctgt 2400 cctacttaat gaatgtccga ctgttagtag ggttttggtt gacgaggtcg ttctgctaca 2460 ctttggtcaa ttatgtgccg tcatgtctaa gttgaaggcc gtgcgagcta tatgttttgg 2520 ggattcggag cagattgcct tttcctcgcg tgatgcttca tttgacatgc gtttctctaa 2580 gattattcct gatgaaacta gtgatgctga caccacattc cgtagcccac aagatgttgt 2640 accgcttgtg cgtttaatgg ctacgaaggc ccttccgaaa ggaacccatt caaaatacac 2700 gaaatgggtt tctcaatcta aagtgaaaag atctgttaca tctcgtgcca tcgctagtgt 2760 gacattggtt gacttggatt cttccaggtt ctatataacg atgacccaag ctgataaggc 2820 ctcactgatt tcaagggcga aagagatgaa tctaccaaag actttctgga atgaaaggat 2880 taaaaccgtg catgagtctc agggtatctc cgaagaccac gttactttgg taagattaaa 2940 gagtacaaaa tgtgacctgt ttaaacagtt ttcttattgt ctcgttgcac tgacgagaca 3000 caaggtcaca ttccgctacg agtactgtgg tgtattgaac ggcgatttaa tcgccgaatg 3060 tgttgctcgt gcttagcggt ctccctcttc gggcgggatc tgagttggcg gtaatctgca 3120 aaccgtctga agtcactaaa cacattgtgt ggtgaacggg ttgtccatcc agctaacggc 3180 taaaatggtc agtcgtggag aaatccacgc cagtagactt acaagtctct gaggcacctt 3240 tgaaaccatc tcctaggttt cttcggaagg acttcggtcc gtgtacttct agcacaacgt 3300 gctagtttca gggtacgggt gccccccact ttcgtggggg tctctaaaag gagacca 3357 //