ID   D00325; SV 1; linear; genomic RNA; STD; VRL; 1356 BP.
XX
AC   D00325;
XX
DT   11-APR-1990 (Rel. 23, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 7)
XX
DE   Rotavirus subgroup 1 gene for VP6, complete cds.
XX
KW   capsid protein; gene 6; genomic segment 6; major inner capsid protein.
XX
OS   Rotavirus subgroup 1
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A.
XX
RN   [1]
RP   1-1356
RX   PUBMED; 2455770.
RA   Gorziglia M., Hoshi Y., Nishikawa K., Maloy W.L., Jones R.W.,
RA   Kapikian A.Z., Chanock R.M.;
RT   "Comparative sequence analysis of the genomic segment 6 of four rotaviruses
RT   each with a different subgroup specificity";
RL   J. Gen. Virol. 69:1659-1669(1988).
XX
DR   MD5; f0fc55ffb65be9877e865e3e4d386028.
DR   EuropePMC; PMC1925260; 17059839.
DR   EuropePMC; PMC2566130; 18667595.
XX
CC   98.75% of gene 6 of rotavirus strains 1076, Gottfried, H-2 and
CC   FI-14 was sequenced directly by the dideoxynucleotide method using
CC   synthetic oligonucleotides to prime cDNA synthesis from mRNA. The
CC   remaining 1.25% represents the 17 nucleotide long primer used to
CC   initiate the primer extension.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1356
FT                   /organism="Rotavirus subgroup 1"
FT                   /strain="1076"
FT                   /serotype="2"
FT                   /mol_type="genomic RNA"
FT                   /note="5' end of genomic segment 6 (plus strand)."
FT                   /db_xref="taxon:10978"
FT   CDS             24..1217
FT                   /codon_start=1
FT                   /product="VP6"
FT                   /db_xref="GOA:P16487"
FT                   /db_xref="InterPro:IPR001385"
FT                   /db_xref="InterPro:IPR008935"
FT                   /db_xref="InterPro:IPR008980"
FT                   /db_xref="UniProtKB/Swiss-Prot:P16487"
FT                   /protein_id="BAA00237.1"
FT                   /translation="MDVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIITMNGNE
FT                   FQTGGIGNLPIRNWNFDFGLLGTTLLNLDANYVETARNTIDYFVDFVDNVCMDEMVRES
FT                   QRNGIAPQSDSLRKLSGIKFKRINFDNSSEYIENWNLQNRRQRTGFTFHKPNIFPYSAS
FT                   FTLNRSQPAHDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEHIVQLRRVLTTAT
FT                   ITLLPDAERFSFPRVINSADGATTWYFNPVILRPNNVEVEFLLNGQIINTYQARFGTII
FT                   ARNFDTIRLSFQLMRPPNMTPTVAALFPNAQPFEHHATVGLTLRIESAVCESVLADASE
FT                   TMLANVTSVRQEYAIPVGPVFPPGMNWTDLITNYSPSREDNLQRVFTVASIRSMLIK"
XX
SQ   Sequence 1356 BP; 458 A; 241 C; 250 G; 390 T; 17 other;
     ggcttttaaa cgaagtcttc aacatggatg tcctgtactc attgtcaaaa actcttaaag        60
     acgccagaga caagatcgtt gaaggcacat tatactccaa tgtaagtgat ctaattcaac       120
     agtttaatca aatgataatt actatgaatg gaaatgaatt tcaaactgga ggaattggca       180
     acttacccat tagaaattgg aattttgatt ttggcctact tggaactact ctactaaact       240
     tagatgctaa ttacgttgaa actgcacgta atacaattga ttattttgtc gattttgtgg       300
     ataatgtatg catggatgag atggttaggg aatcacaaag aaatggaatc gcaccgcaat       360
     cagactcact cagaaaactg tcaggcatta aatttaaaag aataaatttt gacaattcat       420
     cagagtatat tgaaaattgg aatctgcaga atagaagaca gagaacaggt ttcacattcc       480
     acaagccgaa catctttcct tattcagcat catttacact aaaccgatcg caaccagctc       540
     atgataattt aatgggtaca atgtggttaa atgcaggatc agaaattcag gttgctggat       600
     ttgattattc atgtgctatt aacgctccag ctaatacaca acaatttgaa catattgtac       660
     agctccggag agtactaact actgctacga taactctttt accagacgca gaaagattta       720
     gttttccaag agtgattaat tcagctgacg gagcaactac atggtatttt aatccagtga       780
     ttcttaggcc aaataacgtt gaagtagagt ttctgttgaa tgggcaaata ataaacactt       840
     atcaagcaag atttggaaca ataatagcta gaaattttga tactattaga ttgtcattcc       900
     agctaatgag accaccaaat atgacaccaa cagtagctgc actatttcca aatgcacaac       960
     catttgaaca tcatgctacg gtaggcctaa cactaagaat tgagtctgca gtgtgtgaat      1020
     cagtactagc tgatgcgagc gaaacaatgc tagctaatgt aacgtctgtt aggcaggaat      1080
     acgcaatacc agttggacca gtatttccac caggcatgaa ttggactgat ctaatcacta      1140
     attactcacc atctagggag gataatttgc agcgtgtgtt tacagtggct tccattagaa      1200
     gcatgctaat taaatgagga ccaagctaac tacttggtat ccgaacttta taagcatgta      1260
     gctatgtcaa gctatttgaa ctttgtaagt aaggatgtat ttatacattc gctacacaaa      1320
     gtaatcactt caatgatgtn nnnnnnnnnn nnnnnn                                1356
//