ID D00322; SV 1; linear; genomic RNA; STD; VRL; 7362 BP. XX AC D00322; XX DT 12-APR-1990 (Rel. 23, Created) DT 26-SEP-2007 (Rel. 93, Last updated, Version 10) XX DE Beet ringspot virus gene for polyprotein, complete cds. XX KW . XX OS Beet ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7362 RA Fritsch C.; RT "Beet ringspot virus gene"; RL Unpublished. XX RN [2] RA Greif C., Hemmer O., Fritsch C.; RT "Nucleotide sequence of tomato black ring virus RNA-1"; RL J. Gen. Virol. 69:1517-1529(1988). XX DR MD5; b54d9dba56fb1564afab4427a17918fb. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC3314827; 22218961. DR EuropePMC; PMC5345158; 28279165. XX FH Key Location/Qualifiers FH FT source 1..7362 FT /organism="Beet ringspot virus" FT /segment="1" FT /strain="S" FT /mol_type="genomic RNA" FT /clone="p1831, p1628, p103, p1792, p172, p160, psTP29" FT /note="5' end of TBRV RNA-1" FT /note="TBRV has a genome consisting of two ssRNA species of FT RNA-1 and RNA-2. The sequence of the RNA-1 was determined FT from overlapping cDNA clones." FT /db_xref="taxon:191547" FT CDS 261..7061 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF" FT /db_xref="GOA:P18522" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/Swiss-Prot:P18522" FT /protein_id="BAA00234.1" FT /translation="MSVTLSPSGDCFSFNHVKYNNSLNKYLFYNSNLDIVLDDFDFYFN FT FYVKKYNVLLSFFSDRVLSALYTSMSVSEAASLAMEDFCELALDELKINPFHQLWEETL FT ANWPVYPGTSLLDFCRTQYEIRREAAEASAEILRLKEVARQRAFDDEVEFLIKHGAKVH FT FAPSFAAQLWRAGKDQKKCRGILLGKLNKAKALGEAHRSAVARAQAKAEVLREFEPSPQ FT QIQRALEAQIFADRLSRKYAALTARVRAKRAAARELREKELFLETQDLLNAPLLPPMEK FT VGIERKYRKVRPTGSNVTSTPKPNVLENLCPFMGLGAKTADVRCQATLMAGKIHPQYPR FT LASAIYAWVLGPSMKFECIAPVKTFIKGLTFMVDYFPEEVLIDELNKINSEARCFEASL FT VLEEERAKLEAHAENANCRANIFMKAMAGVKNMAKCAYSGFLTGCEEAGRSLSEGVCSV FT MINSFRECIKMIHKELGCAMELIEVMIKKVKDWYNSMLEKLHCGLATLGTYAMYALAIL FT LGCGLTTLLERCIGGAGILTKLFVTGVFAAIGLHAAGGFDGLQREMVQMCTALAAGIFD FT VHHKGNGKYSPMADILAEQRLEDRRADNVRSIPIISGIISAMQQFGTGLCSMHSISLIE FT IGKLGAACHSMRMGKEALKEFCATIMYYLGRISDKVTGRETVFFDELSTLVSVDVRGWI FT LCAQSCIRESFHTEIGNQFFRDMVAQLVDDGQKLQVGVNGIPRKISTDYSQLIGQIMKD FT LMELHKRTIRAGISEGRRCEPVWIYLFGQRHCGKSNFMATLDNALAKHFGLPNTTAYRN FT CKDSFFSGYSGQTFFHVDDLSSVKLDPPMEAEMINLVSCQEVPLNMADLADKPIYFRSP FT FIISSSNFEDVPAGCGVRDIEAYRSRKACLVEMRRKPGVLFDPDNPLLASQARFKDPMS FT QMLLEGQTEENSWLEMEDVVTEIINISARHRAAQEKLQARYMREKSLLDPLALAAENFL FT KGEVQNAYLDFSGLELEKAGIPKPQGGRGLYVDGSLYLLDPTFQFEEIPITDDGYKRLW FT DERMRKSFLSKIQTGEYLNSKSMVVTGFLRSLVNGDCAVLSKDTLSSSASVAQQSIFKA FT LGIDERIYLRTLQHQLDLYSADIPENPYSNSAWIKILKAIGMGRTYLAENGCGILMIAA FT ALILILVSAWGFWKLFIGLFSGSMSLGAAIVGMSAVDIKAQQKSSSQEGGYRARNIPIH FT HRYAYAKSQAGDGLLPAARLCVAIYQPGGGFVSAMQYKNKSVRMTRHQALRFQEGEQLT FT VIFSSTGESQLIRWHKYHMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFK FT TIGYVLRVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDC FT GMIILCQIKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQSQIEYIPKFGEAYDGFFKA FT GYVPMADAPTLPKKTNMVPVPQSLRVPCDVPIKEPAVLTNADKRCPAGVNPPVTALKKK FT FEHPMKELEQEILDEVATDILETWYDCEDHVLNDIPLVVAINGIPADSEEAELENFVMK FT TSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLKLKEGGMAAKLHENLVEFTKNEVPELVV FT IECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHVLPCQVGTNP FT YSREWGHMLNRLMRPKTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQQA FT QRYNMLMALVGRYAFVGPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPER FT NRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKS FT FWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVE FT ELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLK FT YDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMG FT VCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSP FT APYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTATIGTFYFA FT NGETYAALCEYKEGKVLNYEGFPTLILNEAAKDRKVPCMVATQAKTKFKVSLACDSTMC FT PHHTAVCETYEKAFRHCWLAKCKTSAVKVSPWHGTKLS" FT misc_difference 894 FT /replace="c" FT /citation=[2] FT misc_difference 2498 FT /replace="" FT /citation=[2] FT misc_difference 2502 FT /replace="" FT /citation=[2] FT misc_difference 2510..2511 FT /replace="ac" FT /citation=[2] FT misc_difference 2525 FT /replace="" FT /citation=[2] FT misc_difference 3241 FT /replace="" FT /citation=[2] FT misc_difference 3277 FT /replace="" FT /citation=[2] FT misc_difference 3293 FT /replace="" FT /citation=[2] FT misc_difference 3992 FT /replace="a" FT /citation=[2] FT misc_difference 4014 FT /replace="" FT /citation=[2] FT misc_difference 4112 FT /replace="c" FT /citation=[2] FT polyA_site 7362 FT /note="polyadenylation site" XX SQ Sequence 7362 BP; 1927 A; 1537 C; 1734 G; 2164 T; 0 other; ttgaaaataa attttcaagt ctttacattg tgtacaccca ctgctttcta ttgaagtcaa 60 ggtaacgccc tgcaccaact tgcttgcaac gttctcacaa tcatattgtg aatttctttt 120 ctcttgcatt gctgcggtaa tacagcactg atttcttttg agatcagacc aagtcttaac 180 ttggtgtgcg ttcttttcat tgaagtgtag gatagcgcct accaatcgat tatcaggatc 240 gcgcctgata ttttgtgaac atgtccgtta ctctttcccc ttctggggat tgtttttctt 300 ttaaccatgt taaatataat aatagtttaa ataaatattt attttataat agtaatttag 360 atatcgtcct tgacgatttt gatttttatt ttaattttta tgttaaaaag tataatgttt 420 tactttcttt cttttctgac agagttttat cggcactata tacgtcgatg tctgtcagcg 480 aggctgcctc tctcgcaatg gaggactttt gtgagcttgc tcttgacgag ctcaagataa 540 atcctttcca ccaactgtgg gaggagactt tggccaactg gcctgtttat ccggggactt 600 ctctcctgga tttctgccgg actcaatatg agatccgaag agaggctgct gaggcctccg 660 ctgaaatcct ccgtctgaag gaggttgcac gtcagcgtgc atttgatgat gaggtggaat 720 tccttatcaa acatggggct aaagttcatt ttgcccccag cttcgccgct cagttgtggc 780 gagctggaaa ggaccaaaag aaatgccgag gcattcttct gggaaagctc aacaaggcta 840 aggccttggg cgaggcccat cgttcagcgg tggctcgagc ccaggctaag gctgaggttt 900 tgagggagtt tgagccctcg ccccaacaaa tccaaagagc tcttgaggct caaatatttg 960 cggacagatt gtctcgcaag tatgctgctc tcaccgctcg ggtgcgagcg aagcgggccg 1020 ctgcccgaga gctccgcgag aaggagcttt ttctggagac acaagatctc ctgaatgcac 1080 ccctgctgcc acccatggaa aaggtgggaa ttgaaaggaa gtaccgcaag gtacgaccta 1140 ctgggtccaa tgtgacctct actcccaagc caaatgtgct tgaaaatctt tgccctttta 1200 tgggcttggg agccaagacc gctgatgtgc ggtgtcaggc cactctgatg gccggcaaaa 1260 tacatcccca atacccccga ctggcttctg ctatatatgc ctgggtactt gggccttcca 1320 tgaaatttga gtgcattgca ccagttaaga cctttatcaa gggtctaact ttcatggttg 1380 attacttccc tgaggaggtc ctcattgatg agctcaacaa aattaattcc gaggctcgct 1440 gttttgaggc ttccctcgtt ctggaagaag aaagggccaa gcttgaggcc catgccgaaa 1500 atgcgaactg ccgcgcaaat attttcatga aagctatggc aggagttaag aatatggcta 1560 aatgtgccta ttccggattt ctgactggct gtgaagaagc aggtcgctca ctctctgaag 1620 gcgtgtgttc tgtaatgata aattcattca gggagtgcat taaaatgatt cacaaggagc 1680 ttggctgtgc aatggagctt attgaagtca tgattaagaa ggtcaaggat tggtacaatt 1740 ccatgttgga gaaactccat tgtggccttg ccactcttgg cacttatgcc atgtatgcac 1800 ttgccatcct tcttggatgt ggactcacca ctcttttgga gaggtgtatt gggggagctg 1860 gtattcttac caagctcttt gttactggag tcttcgctgc tatagggctc catgctgctg 1920 ggggttttga tggtcttcag cgtgaaatgg tgcaaatgtg tactgcactt gctgcaggga 1980 ttttcgatgt gcaccataag gggaatggaa aatactcccc aatggcagac atcttggctg 2040 aacagcgcct ggaagacaga cgagctgata atgttcggtc aattcctata atctcaggta 2100 tcatttctgc gatgcaacaa tttggtactg gcctgtgctc catgcattct atttcgctca 2160 ttgaaattgg aaagcttggt gctgcatgcc attctatgag aatgggaaaa gaggccttaa 2220 aggagttctg cgccaccata atgtattatc ttggtagaat ttccgacaag gttactggaa 2280 gggagacagt gttctttgat gagctatcta ctcttgtctc cgttgatgtt cgtggttgga 2340 tactctgcgc tcaaagctgt attcgtgaat ccttccacac tgagattggc aaccagttct 2400 tccgtgatat ggttgcccaa ctggttgatg atggccaaaa actccaggtt ggagtcaatg 2460 gtataccacg gaagatttct accgattaca gccagctaat cggtcagatc atgaaggacc 2520 taatggaact ccacaaaaga accattaggg ctggcatctc tgaagggcgg cgctgtgaac 2580 ctgtatggat ctatttattt ggacagcgcc attgtgggaa gtcgaacttt atggctacgc 2640 ttgataatgc tcttgctaag cattttggac ttccaaatac tacagcttat agaaattgca 2700 aagacagttt cttctctggg tatagtggtc agactttttt ccacgttgac gatctttcgt 2760 ctgtaaagct tgacccacct atggaagctg aaatgataaa tttggtctct tgccaagaag 2820 taccgctgaa tatggctgat cttgctgata agccaattta tttcaggagt ccttttatca 2880 tttcctctag caatttcgag gatgttcctg caggctgtgg cgttcgtgat attgaagcat 2940 atagatcgcg aaaggcgtgt cttgtcgaaa tgcgccggaa gcctggtgtt ctttttgacc 3000 ctgacaatcc tttgttggca tctcaggccc gcttcaagga tcctatgtcc caaatgctat 3060 tggagggaca gactgaggaa aactcctggc ttgaaatgga agatgttgtt actgaaatta 3120 tcaacatctc tgcgcgtcat cgcgctgcac aggagaaatt gcaggccaga tatatgcgtg 3180 agaaatcatt gcttgacccc ctagcacttg ctgctgaaaa ttttcttaaa ggggaggtac 3240 aaaacgcata tcttgatttt tctggtcttg aacttgaaaa agctggaatc ccaaaaccgc 3300 aaggaggtag gggtttgtat gttgatggga gtttatatct ccttgatcca acattccagt 3360 tcgaggaaat acccattact gatgatgggt ataagcgttt gtgggacgag agaatgagga 3420 aaagtttcct cagcaagatc caaactggtg aatacctaaa ttcgaaatca atggttgtca 3480 ctggtttcct tcgttccctg gtgaacgggg attgtgctgt tctttcaaaa gacacactct 3540 cgtccagtgc ttcagtggcc cagcaatcta tttttaaagc actggggatt gacgagcgta 3600 tttatctgcg tacactccaa caccaattgg atctttattc tgcggatatc ccagaaaatc 3660 cctacagcaa ttctgcctgg attaaaattt taaaggctat aggcatgggt agaacatatc 3720 ttgcagaaaa tggctgtggg atcttaatga ttgcggcagc tctcatactc attcttgtga 3780 gtgcatgggg tttctggaaa ctctttatag ggcttttcag tggttctatg tctttggggg 3840 ctgctatcgt gggcatgtct gctgtggaca ttaaggctca acagaagtca agcagccagg 3900 aaggaggata tagggctcga aacatcccta tacatcaccg ttatgcatat gccaaatccc 3960 aggctggtga tggtttgctc cccgcggcac gtttgtgtgt tgctatctat caacccgggg 4020 ggggttttgt ttccgcaatg caatataaga ataaatcagt gcgaatgaca agacaccaag 4080 cattgcgttt tcaggaaggt gaacaattga cggttatctt ttccagtacg ggagagtcac 4140 aactcatccg ctggcataaa taccatatgc gtgaggaacc aggttctgag attgttacct 4200 ggttggctcc aagccttcct tccctttccc ccgatcttaa agatctgttt ttggaggata 4260 aggaggtgga tttgccaaac cactttaaaa caattggtta cgtcctgcgt gttgacaata 4320 cagcattcca ttatgatttg cttgatactt atgctgctgt cgacaagaca cccctaccgc 4380 taaaaggtgt ggtaggaaat gaactctacc tgcatgaaat accagagaag attacctttc 4440 actatgaatc acgaaatgat gattgtggaa tgataatctt gtgccaaatc aagggcaaga 4500 tgcgtgtagt agggatgcta gttgcaggga aagataagac tagctgggct gatataatgc 4560 caccaaatac cttagctgaa cttcagagcc aaattgaata tattccgaag tttggagagg 4620 catatgatgg cttttttaaa gccggctatg taccaatggc tgatgcgcct accctgccaa 4680 agaagactaa catggtacca gtcccccaat ctctgagggt gccatgtgat gtccctatca 4740 aggaacctgc agtgttaacc aatgctgaca aacgctgtcc tgcgggcgtc aacccaccag 4800 ttacagctct taaaaagaag tttgaacatc caatgaaaga gctagaacaa gaaatcctcg 4860 atgaggttgc cacggacatt ctggaaacgt ggtatgattg tgaggaccat gtccttaatg 4920 atattccatt ggtggttgcc atcaatggaa tacctgctga tagtgaggag gctgaactag 4980 aaaattttgt catgaaaacc tcacctggat acccctactt caagaataac cgtgcagaga 5040 aactgaaagg caaatctgct tattttgaag aggcagagga tgggaccctc aaactgaaag 5100 aagggggaat ggcagctaaa ctccatgaaa acttggtgga gtttacaaag aatgaagttc 5160 cggagctggt cgtgattgaa tgtacgaagg atgagttgct accggagcgc aaaatcaagg 5220 ttggtgcttg tagactcttt gagataatgc ctttgcatta caatctcttt ttgcgccaaa 5280 agacatgtgc tttcacccag ttcttacagc acaatagaca tgtcttgcct tgtcaagttg 5340 ggacgaaccc ctattcccgc gaatggggtc atatgttgaa tcgtctcatg cgaccaaaaa 5400 ccaatgaagc cataaattgt gactatagtg gttttgatgg actcctgaat gcccaggtta 5460 ttgaatgcat agctaaaatg attaatcgtc tctatgctct ctctggggaa tctgaagtcc 5520 aacaagccca acgctacaat atgctgatgg cattggttgg aagatacgct tttgtagggc 5580 cagaagtgta taaggttaac tgtggtttgc cctctggatt tgccttgacg gttgtggtga 5640 attctgtttt caatgagatt ttgatccgct atgcctacaa gaaactagca ccaaaacctg 5700 agcgaaatcg cttcaatcag gtagtatgct tgttggtata tggagatgac aatctcattt 5760 ccgtgtctcc gtccattgcc tcctggttta caggtgaggc catccgtatc actcttgctg 5820 agaagaaggt aaaaattact gatggcagtg ataaggatgc cccaacaatt gaggcaaaat 5880 ctttctggga gctggacttt cttaaaagaa aattcctgaa gcttgataat ggcattgtcc 5940 aggctcccct tgatcggtca gcaatattct cttcgttata ttggctgacc cccgataaat 6000 ccaaattcca tgcgtctcaa agagcctcag attttcaggg gaccgtggat gttgtagaag 6060 agttgatttt aaacgttaat gttgccctta tggaactcta tctacataat gatcccagag 6120 aattttcgcg tgtgcgtgat ttctatataa aggctttacc attagccaca ggccagtttc 6180 gtacctgggc tttttgtgag gcttttcatt cagcacagca gactgggatg ctgaaatatg 6240 atcctgcaaa agttttagat cacatgtctg gcttagattt taaaaaattt atgcatgtgt 6300 ctgaacaggg gaataaagcc catttttaca ctgaaatgtt gggcgttgca ggacctcact 6360 acaaacctca ggagaatgat tttattgtct ctactgagcc tcttaagatg ggggtttgtg 6420 gtgaacacgt acccattcaa tatgggtctg gtgttggggg acttcccaca aagaaatggg 6480 ttctggattt tggcaggcct tcacaactga agaataaact gggctacctt atccatccta 6540 tcttgagggc gcaaattgag gcagggaaga gacttgtatt tatgagtcct gctccctacg 6600 ttgcaaataa tgctgccttg attgcttttg gcactggtgg aaaaatgctc atccaaaagg 6660 atgccttggt acactacaga aatgtaattc ccgagtcaac ttctggattg gaacaatatt 6720 ttgatgcccc tctcccaacc gccactatcg gtaccttcta ttttgccaat ggtgaaacct 6780 atgctgccct ctgtgaatat aaggaaggaa aagttctcaa ttatgagggt tttcccactc 6840 taattttgaa tgaggcagca aaagatagaa aggtgccctg tatggtggca acacaagcca 6900 aaaccaaatt caaagtttct ttggcttgtg atagtacaat gtgtccccat cacactgctg 6960 tgtgtgagac ctatgagaaa gcctttcggc actgttggtt ggccaagtgc aaaaccagtg 7020 ccgtgaaggt ttctccttgg catgggacta aactttctta ggtatttctt atagagaata 7080 tccctccctg gtgatctgga gtaaaaagaa ccatttggtg ttgagataac caaattgaaa 7140 taactcaact ttgagcaatg cttagacctt cgtggttgct ctcatattta aggtcattgt 7200 gaaattttct tttgttttcc taatttaggt ttaatttctg ttgtgtgttt aattactgtt 7260 ttcagtggcg atgcataggg tttgtccttt tccctgtggt gctatgttgg acacaaaaag 7320 attttctctt ttgtaaatga taaaatgttt tcttcaaaaa gc 7362 //