ID   D00298; SV 1; linear; genomic RNA; STD; VRL; 1232 BP.
XX
AC   D00298;
XX
DT   11-APR-1990 (Rel. 23, Created)
DT   17-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE   Plum pox potyvirus gene for polyprotein, capsid protein region, partial
DE   cds.
XX
KW   capsid protein; polyprotein.
XX
OS   Plum pox virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1232
RA   Ravelonandro M., Varveri C., Delbos R., Dunez J.;
RT   "Nucleotide sequence of the capsid protein gene of plum pox potyvirus";
RL   J. Gen. Virol. 69:1509-1516(1988).
XX
DR   MD5; f9be375e585fa291693e2d4b01ecd8f8.
XX
CC   The sequence of the 17 amino-terminal amino acids of the PPV capsid
CC   protein was determined chemically. They suggest that the PPV capsid
CC   protein is a product of the maturation of a large polyprotein, and
CC   the putative cleavage site is at a glutamine-alanine dipeptide.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1232
FT                   /organism="Plum pox virus"
FT                   /strain="D"
FT                   /mol_type="genomic RNA"
FT                   /clone="pSE508"
FT                   /note="85 bp upstream of HpaII site"
FT                   /db_xref="taxon:12211"
FT   CDS             <1..1017
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:P13529"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR001650"
FT                   /db_xref="InterPro:IPR001730"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="InterPro:IPR009003"
FT                   /db_xref="InterPro:IPR011492"
FT                   /db_xref="InterPro:IPR013648"
FT                   /db_xref="InterPro:IPR014001"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR039560"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/Swiss-Prot:P13529"
FT                   /protein_id="BAA00210.1"
FT                   /translation="VQTLLWHQADEREDEEEVDAGKPIVVTAPAATSPILQPPPVIQPA
FT                   PRTTAPMLNPIFTPATTQPATKPVSQVPGPQLQTFGTYGNEDASPSNSNALVNTNRDRD
FT                   VDAGSIGTFTVPRLKAMTSKLSLPKVKGKAIMNLNHLAHYSPAQVDLSNTRAPQSCFQT
FT                   WYEGVKRDYDVTDDEMSIILNGLMVWCIENGTSPNINGMWVMMDGETQVEHPIKPLLDH
FT                   AKPTFRRIVARFSDVAEACVEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTP
FT                   VRAREAHIQMKAAALRNVQNRLFGLDGNVGTQKQDTERHTDGDVNRNMHTFLGVRGV"
FT   mat_peptide     25..1014
FT                   /product="capsid protein"
FT   polyA_site      1232
XX
SQ   Sequence 1232 BP; 362 A; 275 C; 295 G; 300 T; 0 other;
     gtccagacgt tgttgtggca ccaagctgac gaaagagagg acgaggagga agttgatgca        60
     ggcaagccga ttgtagttac tgcaccggca gcaactagcc caatacttca accacctcca       120
     gtcatacagc ctgcaccccg gactacggcg ccaatgctca accccatttt cacgccagca       180
     acaactcaac cagcaacaaa accagtttca caggtgccag gacctcaact gcaaactttt       240
     ggaacatatg gtaatgagga tgcatcacct agcaactcaa acgcgctagt caacacaaac       300
     agagacaggg acgtcgatgc aggatcaatt ggaactttta cagtgccacg tttgaaggca       360
     atgacttcga aactatctct gccaaaggtg aagggaaagg ctattatgaa cttgaaccat       420
     ttggcacatt atagtcctgc acaggttgac ttgtcaaaca cgagagctcc gcagtcttgt       480
     ttccaaactt ggtatgaagg agttaagcga gattatgatg tcacggacga tgaaatgagc       540
     atcattttaa atggtcttat ggtttggtgc atagagaatg gaacatcccc gaatatcaat       600
     ggaatgtggg tgatgatgga tggggaaaca caagtggagc atccaataaa gccattgttg       660
     gatcatgcga aacccacttt tagacgaatt gtggcacgtt tcagcgacgt ggccgaagcg       720
     tgtgtggaaa aacgaaatta cgaaaaagca tacatgccaa ggtatggaat tcagcgcaac       780
     ctgacagact acagcctcgc cagatatgcc tttgattttt acgaaatgac ttcaacgaca       840
     cccgtacggg cacgtgaagc tcatatccag atgaaggcag cagcattgag aaatgttcaa       900
     aatcgtttat ttggcttgga tggaaacgtc ggaacacaga agcaggacac agagagacac       960
     acggatggtg atgttaatcg caacatgcac accttcctcg gtgtgagggg agtgtagtgg      1020
     tctcggtatc tatcataaac tctacctggt gagagtctaa tcatccagtt gttttagatt      1080
     cctgttagca tccttttctc cgctttaata gcagtacatt cagtgaggtt ttacctccat      1140
     atgttctagt ctgttattgt cgaacacagg cccttgtatc tgatgtagcg agtgctccac      1200
     ttcattcggg ttatagttct tgtgcaagag ac                                    1232
//