ID   D00240; SV 1; linear; genomic RNA; STD; VRL; 900 BP.
XX
AC   D00240;
XX
DT   11-APR-1990 (Rel. 23, Created)
DT   10-JUL-2007 (Rel. 92, Last updated, Version 10)
XX
DE   Papaya mosaic virus genes for capsid protein, hypothetical protein,
DE   complete cds.
XX
KW   .
XX
OS   Papaya mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-900
RX   PUBMED; 3335832.
RA   Abouhaidar M.G.;
RT   "Nucleotide sequence of the capsid protein gene and 3' non-coding region of
RT   papaya mosaic virus RNA";
RL   J. Gen. Virol. 69:219-226(1988).
XX
DR   MD5; b6c23840aa33e32e390804d5e81b6e5b.
DR   EuropePMC; PMC4213569; 25337891.
XX
CC   The amino acid sequence of the capsid protein obtained from the
CC   nucleotide sequence (<J. Gen. Virol. 69, 219-226 (1988)>) and that
CC   of the direct amino acid sequence (Short et al.) differed in three
CC   amino acids. Gln was replaced by Glu (position 685), Thr by Ala
CC   (position 700) and Glu by Gln (position 775). The capsid protein
CC   was mapped to the 3' end of the viral genome, and in the
CC   complementary region a long open reading frame was also found.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..900
FT                   /organism="Papaya mosaic virus"
FT                   /mol_type="genomic RNA"
FT                   /clone="A88, A99"
FT                   /note="202 bp upstream of SacI site"
FT                   /note="synonym: Papaya mosaic potexvirus"
FT                   /db_xref="taxon:12181"
FT   CDS             136..780
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:P16596"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="PDB:4DOX"
FT                   /db_xref="UniProtKB/Swiss-Prot:P16596"
FT                   /protein_id="BAA00169.1"
FT                   /translation="MSKSSMSTPNTAFPAITQEQMSSIKVDPTSNLLPSQEQLKSVSTL
FT                   MVAAKVPAASVTTVALELVNFCYDNGSSAYTVTGPSSIPEISLAQLASIVKASGTSLRK
FT                   FCRYFAPIIWNLRTDKMAPANWEASGYKPSAKFAAFDFFDGVENPAAMQPPSGLIRSPT
FT                   QEERIANATNKQVHLFQAAAQDNNFTSNSAFITKGQISGSTPTIQFLPPPE"
FT   CDS             complement(336..755)
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="putative ORF"
FT                   /db_xref="UniProtKB/Swiss-Prot:P16597"
FT                   /protein_id="BAA00170.1"
FT                   /translation="MVGVDPEIWPLVMKAELLVKLLSCAAAWKRCTCLLVALAIRSSWV
FT                   GDLISPEGGCMAAGFSTPSKKSNAANLALGLYPEASQLAGAILSVLRFQIIGAKYRQNF
FT                   LREVPEALTILANCASDISGIDDGPVTVYALDPLS"
FT   polyA_site      900
XX
SQ   Sequence 900 BP; 240 A; 253 C; 189 G; 218 T; 0 other;
     tgaactcaca ggacatagtg ctgttctaag aggaaataac tgtgagagct taacaccagg        60
     tgttatagag gccctatccg cccacctaca cgggcttagg aactagcttc attcgaaatt       120
     caaaattctg ttttaatgtc taagtcaagt atgtccacac ccaacacagc cttccccgcc       180
     atcacccagg aacaaatgag ctcgattaag gtcgatccaa cgtccaatct cttgccctcc       240
     caagagcagt taaagtcagt gtccaccctc atggtagctg ctaaggttcc agcagccagt       300
     gtcacaactg tggcattgga gttggttaac ttctgctatg acaatgggtc cagcgcgtac       360
     acagtgactg gcccatcatc aataccggag atatcactgg cacaattggc tagtattgtc       420
     aaagcttccg gcacttccct tagaaaattc tgccggtact tcgcgccaat aatctggaat       480
     ctgaggacgg acaaaatggc tcctgccaat tgggaggctt caggatacaa gccaagcgcc       540
     aaatttgccg cgttcgactt cttcgacggg gtggagaatc cggcggccat gcaaccccct       600
     tcgggactaa tcaggtcgcc gacccaggaa gagcggattg ccaatgctac caacaaacag       660
     gtgcatctct tccaagccgc ggcacaggac aacaacttta ccagcaactc cgccttcatc       720
     accaaaggcc aaatttctgg gtcaacccca accatccaat tccttccacc ccccgaataa       780
     acacacttga cccagcccgt tgtttagcac tatttgttgg ggctattgag ttttcaaaat       840
     gtgcttttgc tatagtagac gaaacttact acctagtttg gttttgcaaa tttcctttcc       900
//