ID D00201; SV 1; circular; genomic DNA; STD; VRL; 2647 BP. XX AC D00201; XX DT 11-APR-1990 (Rel. 23, Created) DT 10-JUL-2007 (Rel. 92, Last updated, Version 8) XX DE Bean golden yellow mosaic virus-[Puerto Rico-Japan] B component DNA, DE complete sequence. XX KW . XX OS Bean golden yellow mosaic virus-[Puerto Rico-Japan] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2647 RX PUBMED; 3037283. RA Morinaga T., Ikegami M., Shimotohno K., Miura K.; RT "Total nucleotide sequences of the infectious cloned DNAs of bean golden RT mosaic virus"; RL Microbiol. Immunol. 31(2):147-154(1987). XX DR MD5; 3eb58efe0d9a90af4183d305ede8895e. DR InterPro; IPR002488; Gemini_C4. DR UniProtKB/Swiss-Prot; P0DJX3; AC4_BGYMJ. XX CC The genome of BGMV is composed of two single-stranded circular CC DNAs, A and B. Nucleotide sequences of DNAs A and B revealed the CC presence of 8 potential coding regions for proteins (ORF1,2 in A, CC ORF3~8 in B). ORFs 5,6,7, and 8 have not the TATA sequence or the CC AATAA sequence near the coding regions (see ). The author originally named the major DNA CC component(shorter DNA) "DNA A" and the minor one (longer DNA) "DNA CC B", although it's more common to call the longer DNA as "DNA A" CC and the shorter one as "DNA B". XX FH Key Location/Qualifiers FH FT source 1..2647 FT /organism="Bean golden yellow mosaic virus-[Puerto FT Rico-Japan]" FT /segment="component B" FT /mol_type="genomic DNA" FT /clone="pBGC6" FT /note="5' end of the 205 base sequence common to both DNAs FT A and B" FT /note="abbreviation name: BGMV" FT /note="synonym: Bean golden mosaic virus-Puerto Rico" FT /db_xref="taxon:222449" FT CDS complement(join(1592..2647,1..6)) FT /codon_start=1 FT /note="ORF4" FT /db_xref="GOA:P0CK40" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/Swiss-Prot:P0CK40" FT /protein_id="BAA00140.1" FT /translation="MPPPQRFRVQSKNYFLTYPRCTIPKEEALSQLQKIHTTTNKKFIK FT VCEERHDNGEPHLHALIQFEGKFICTNKRLFDLVSTTRSAHFHPNIQGAKSSSDVKEYI FT DKDGVTIEWGQFQVDGRSARGGQQSANDSYAKALNADSIESALTILKEEQPKDYVLQNH FT NIRSNLERIFFKVPEPWVPPFPLSSFVNIPVVMQDWVDDYFGRGSAARPERPISIIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSNSVEYNVIDDISPNYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLNKEENRALHNWTIHNAIFVTLT FT APLYQSTAQDCQT" FT CDS 344..688 FT /codon_start=1 FT /note="ORF6" FT /db_xref="GOA:Q67578" FT /db_xref="UniProtKB/TrEMBL:Q67578" FT /protein_id="BAA00135.1" FT /translation="MPIPCVSPECLSVMRRGVIWREPPRFPVLAIILQVVEWAQNPTRP FT MHGSTGPCIESQGYIGCTKAQMCQRDVKDLARSNHMNNAMIYLMLVRLCVYPISHVGMV FT LPIVLVNVFV" FT CDS 370..1125 FT /codon_start=1 FT /note="ORF3" FT /db_xref="GOA:P0CK34" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P0CK34" FT /protein_id="BAA00136.1" FT /translation="MPKRDAPWRHMAGTSKVSRSGNYSPSGGMGSKSNKANAWVNRPMY FT RKPRIYRMYKSPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDITRGNGITHRVGKRF FT CVKSVYILGKIWMDENIMLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHRFNAKVSGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(703..1020) FT /codon_start=1 FT /note="ORF7" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:Q67580" FT /protein_id="BAA00137.1" FT /translation="MILVFSCFLVVIDDMVVHLPKTPYQGLLVACILTTRHLCIEPMHN FT LITITKIVLDRSSTRFIVKHVKNLTKIHRGSIWSTVTDQPKNDTIGMVLKHDVFIHPYL FT T" FT CDS complement(1122..1520) FT /codon_start=1 FT /note="ORF8" FT /db_xref="GOA:P0CK36" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/Swiss-Prot:P0CK36" FT /protein_id="BAA00138.1" FT /translation="MDSRTGENITAHQAENSVFIWEVPNPLYFKIMRVEDPAYTRTRIY FT HIQVRFNHNLRKALDLHKAFLNFQVWTTSIQASGTTYLNRFRLLVLLYLHRLGVIGINN FT VIRAVQFATNKSYVNTVLENHDIKYKFY" FT CDS complement(1267..1785) FT /codon_start=1 FT /note="ORF5" FT /db_xref="GOA:P0CK38" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/Swiss-Prot:P0CK38" FT /protein_id="BAA00139.1" FT /translation="MESRFKLKEEYHQSCCAIQVRVPVIKTSSTKRKTELYTTGPFIMR FT SSSPSQPPSIKAQHRIAKHKAIRRRRIDLNCGCSIFYHIKCADHGFTHRGEHHCASGRE FT FRFYLGGTKSPLFQDHAGGRSSIHTDKDIPHPSQVQSQPQESTGSPQSIPELPSLDDID FT SSFWDDIFK" XX SQ Sequence 2647 BP; 707 A; 521 C; 594 G; 825 T; 0 other; tggcatattt gtaaatatgc gagtgtctcc aaatgagttt gcgagtgtct ccaattgagg 60 ctcctcaaac tctcgctatg caattggaga ctggagtaca atatatacta gaaccctcaa 120 tctcttgaat tatcacatcc atacacgtgg cggccatccg atataatatt accggatggc 180 cgcccgcgcc cctttatatc cgtactgctc cacgtggtgc tttaatttaa attaaagatg 240 tctatttttg actgaccaat gcttttgcat gtgagaagct tagatatttg tgtaaaactt 300 ggcgactaag ttttaccttc gtttataaat ttaaattaaa tgtatgccca ttccatgtgt 360 aagtccagaa tgcctaagcg tgatgcgccg tggcgtcata tggcgggaac ctccaaggtt 420 tcccgttctg gcaattattc tccaagtggt ggaatgggct caaaatccaa caaggccaat 480 gcatgggtca acaggcccat gtatagaaag ccaaggatat atcggatgta caaaagccca 540 gatgtgccaa agggatgtga aggaccttgc aaggtccaat catatgaaca acgccatgat 600 atatctcatg ttggtaaggt tatgtgtata tccgatatca cacgtgggaa tggtattacc 660 catcgtgttg gtaaacgttt ttgtgtgaag tctgtgtata ttttaggtaa gatatggatg 720 gatgaaaaca tcatgcttaa gaaccatacc aatagtgtca ttttttggtt ggtccgtgac 780 cgtagaccat atggaacccc tatggatttt ggtcaagttt ttaacatgtt tgacaatgaa 840 cctagtactg ctacggtcaa gaacgatctt cgtgatcgtt atcaagttat gcataggttc 900 aatgcaaagg tgtctggtgg tcaatatgca agcaacgagc aagccttggt aaggcgtttt 960 tggaaggtga acaaccatgt cgtctataac caccaggaag caggaaaata cgagaatcat 1020 acggagaatg cgttattgtt gtatatggca tgtacacatg cctctaatcc tgtatatgcg 1080 acattgaaaa ttcggatcta tttctatgat tcgataacca attaataaaa tttatatttt 1140 atatcatgat tctcaagtac agtatttaca tatgatttgt ttgttgcgaa ctgaacagct 1200 cgaatgacat tgtttattcc tattacgcct aacctatgta aatacaataa aactaagagt 1260 ctaaatctat ttaaatatgt cgtcccagaa gcttgaatcg atgtcgtcca gacttggaag 1320 ttcaggaatg ctttgtggag atccagtgct ttcctgaggt tgtgattgaa cctgacttgg 1380 atgtggtata tccttgtccg tgtgtatgct ggatcttcca cccgcatgat cttgaaataa 1440 aggggatttg gtacctccca aataaaaacg gaattctctg cctgatgcgc agtgatgttc 1500 tcccctgtgc gtgaatccat gatctgcgca cttgatatgg taaaatatgg aacagccgca 1560 gttcaagtca atgcgtcgtc gacgaatggc tttatgtttg gcaatcctgt gctgtgcttt 1620 gatagagggg ggctgtgagg gtgacgaaga tcgcattatg aatggtccag ttgtgtaaag 1680 ctcggttttc ctctttgttg aggaagtctt tataactgga accctcacct ggattgcaca 1740 gcacgattga tggtattcct cctttaattt gaaccggctt tccatattta cagttggatt 1800 gccagtcctt ttgtgcccca attagctctt tccagtgctt taacttcaaa taattggggc 1860 ttatgtcatc aatgacgttg tattccactg agttggaata gacacgtgaa ttaaagtcca 1920 aatgaccgct caaataatta tgtgggccta atgcacgagc ccacattgtc tttccagttc 1980 gtgaatcacc ttcgacgatg atactaatag gtctttctgg ccgcgcagcg gaaccccttc 2040 cgaaatagtc gtcaacccag tcttgcataa caaccggaat attgacgaat gatgacaacg 2100 gaaatggagg aacccatggt tccggcactt tgaagaagat ccgttcgaga ttagaacgga 2160 tgttgtgatt ttgaaggacg taatctttcg gttgttcttc cttcaatatt gtcaaggcag 2220 attcaattga atctgcgttt aatgcctttg cgtatgagtc gttggcagac tgctgacctc 2280 ctcttgcaga tctgccgtcg acttggaatt gtccccattc gattgtgact ccatctttgt 2340 cgatgtattc tttgacgtcg gaacttgatt tagctccctg aatgttcgga tggaaatgtg 2400 ctgacctggt tgtggatacc aggtcgaaca atcttttatt tgtgcagatg aatttacctt 2460 cgaactgaat aagcgcatga agatggggtt caccattatc gtgacgttcc tcacagacct 2520 tgatgaattt cttattcgtc gttgtatgaa tcttttgaag ttgcgaaaga gcttcttctt 2580 tcggtatagt gcaacgagga taagtgagga aatagttttt ggactgaact ctaaatcttt 2640 gaggtgg 2647 //