ID AY995567; SV 1; linear; genomic RNA; STD; VRL; 7368 BP. XX AC AY995567; XX DT 26-APR-2005 (Rel. 83, Created) DT 26-APR-2005 (Rel. 83, Last updated, Version 1) XX DE Citrus tristeza virus isolate 81P p6, Hsp70h, p61, CPm, CP, p18, p13, p20, DE and p23 genes, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; Riboviria; Closteroviridae; Closterovirus. XX RN [1] RP 1-7368 RA Roy G., Yokomi R.K., Ullman D.E.; RT "Amino acid sequence variations associated with aphid transmissibility of RT Citrus tristeza virus"; RL Unpublished. XX RN [2] RP 1-7368 RA Roy G., Yokomi R.K., Ullman D.E.; RT ; RL Submitted (31-MAR-2005) to the INSDC. RL Plant Pathology, University of California at Davis, One Shields Avenue, RL Davis, CA 95616, USA XX DR MD5; 1e468c0275311faa879c077ff5561110. DR RFAM; RF00193; CTV_rep_sig. XX FH Key Location/Qualifiers FH FT source 1..7368 FT /organism="Citrus tristeza virus" FT /isolate="81P" FT /mol_type="genomic RNA" FT /country="USA:near McFarland, California" FT /isolation_source="aphid transmission during 2001 from a FT naturally infected field tree which was a Fukumoto navel on FT Troyer rootstock" FT /db_xref="taxon:12162" FT CDS 12..167 FT /codon_start=1 FT /product="p6" FT /db_xref="GOA:Q52NP3" FT /db_xref="InterPro:IPR009584" FT /db_xref="UniProtKB/TrEMBL:Q52NP3" FT /protein_id="AAY15731.1" FT /translation="MDCVIQGFLTFLVGIAVFSAFAGLIIIVITIYRCTTKPVRNTSSY FT GTHATV" FT CDS 173..1957 FT /codon_start=1 FT /product="Hsp70h" FT /note="p65; similar to heat shock protein 70" FT /db_xref="GOA:Q52NP2" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="UniProtKB/TrEMBL:Q52NP2" FT /protein_id="AAY15732.1" FT /translation="MVLLGLDFGTTFSTVAMATSSELVILKQSNSSYIPTCLFLHADPN FT SVSYGYDAEYLAASGEPGSFYKDLKRWVGCTAKNYQTYLHKLSPSYKVTVEEFGTKSVP FT VPYLSPLNNDLGLNVALPLLIASYAKSILSDAERVFNVSCTGVICSVPAGYNTLQRAFT FT QQSISMSGYSCVYIINEPSAAAYSTLPKLSSADKYLAVYDFGGGTFDVSVVSVRLPTFA FT VRSSGGDMNLGGRDIDKKLSDKIYEMADFIPQKELNVSSLKEALSLQTDPVKYTVTHHG FT MSETISIDQTALREIASVFINRTIDILTQVKVKSSMPESQSLKLVVVGGSSYLPGLLDT FT LATVPFVSGIVPVEDARTAVARGCALYSECLDGRSKALLIDCITHHLSVTTFSADSVVV FT AAAGSPIPFEGERKLTLRKCVSTSNYQARMFEGDYEKVFRNERIYAASVSLFTLGVNWR FT VPKDVEMTLVTKVDSMGKVEFYLKGPSGELVNVQGTSHYDYTGMPHPTRNLVKLSDYNV FT NSAALVLALTLTREKREKFLLRTLFDTLLADLRRTASLSEYSKKYPITRNDIDVVSSRM FT GIVVSKVLRGSDLERIPL" FT CDS 1881..3488 FT /codon_start=1 FT /product="p61" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:Q52NR8" FT /protein_id="AAY15733.1" FT /translation="MSSHHVWGSLFRKFYGEAIWKEYLSESTRSFDERNVSLDHTLSSG FT VVVRRQSLLNAPQGTFENELALLYNSVVINDFVELTGMPLKSLMTGIEDRKVPDELISV FT DPHEVGCRFTLNDVESYLISRGEDSADVTAVEHSWCLSNSCGRLLSSTEIDAYKTLVFT FT KNFDSNVSGVTTKLETYLSYCISLYKKHCMKDDDYFNLITPMFNCLVKVLASLGLFYEK FT HTDNPLLTGMLIEFCLENKVYYSTFKVNLDNVRLFKSKVLPVVLTVWDISEPDDPVDER FT VLIPFDPTDFVLDLPKLNIHDTMVVVGNQIRQLEYVVESDALDDLSQHVDIRLAADNPD FT LRVDLRWAGMFVYYGVYRCAIDRVVERPTLFRLPQKLLSQDDGESCSLRMSAVEALFNL FT VQKVNRDINVRRQFMGRHSKVALRLYRNLGLRFPPISSVRLPVHHGYLYVDFYKRVPDD FT AVTADELESLRQLRSSVDVMCKDRVSITPPPFNRLRRGSSRTFRGRGARGASSRHMSRD FT VATSGFNLPYHGRLYNTS" FT CDS 3463..4185 FT /codon_start=1 FT /product="CPm" FT /note="minor capsid protein; p27" FT /db_xref="GOA:Q52NS5" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:Q52NS5" FT /protein_id="AAY15734.1" FT /translation="MAGYTTLPNTDDKEMNPVSAAVPGKYPDVIEKFVANRSVDALIEG FT VISKLDTNSIYEDSTEKFTGEHLKYVMVTMDAFLLENYKTKTEDLLVHLAMIQKRLCTT FT STSTKTKFRDKGCISYVQGGSRYKLMDKVVFPFIISKFTDRETPNALRKYACTFEELHL FT CMARLRPDLYENKRTTKAGTPHLKGYLSADFLSGSLPGYSEHERGIILRASESMLARRQ FT GYEEATELLNLRDLGKYL" FT CDS 4285..4956 FT /codon_start=1 FT /product="CP" FT /note="capsid protein; p25" FT /db_xref="GOA:Q06192" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:Q06192" FT /protein_id="AAY15735.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNDV FT RQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" FT CDS 4922..5425 FT /codon_start=1 FT /product="p18" FT /db_xref="InterPro:IPR008452" FT /db_xref="UniProtKB/TrEMBL:Q9YN82" FT /protein_id="AAY15736.1" FT /translation="MSGSLGNLTHVDLLRSDSRFLSGWWSFIVNVGDIIVRFALHVPNE FT DMLNSFSAISNCTIIADGSALLKDNTVVDRLESMNPLAYLLKLAKTTTTICFTMSNKVL FT FGTTKSEPLSCLAITSDRVLFKVIMGANVDDSRCGCSIWFYNNGTFQNGLTRCNNLVTL FT FSAT" FT CDS 5459..5818 FT /codon_start=1 FT /product="p13" FT /db_xref="InterPro:IPR009692" FT /db_xref="UniProtKB/TrEMBL:Q9IFW2" FT /protein_id="AAY15737.1" FT /translation="MSIRRVWLKVIAVITVLWYGKEPSISEGYNALMNDDFKFIDTHFS FT NVSYAKKCYDLANFDLDFLRIVIIPLSGGTANESRSDRTNVSEIVESHVSDRDRMHILL FT RNKRIQIPSLLPCDN" FT CDS 5894..6442 FT /codon_start=1 FT /product="p20" FT /db_xref="InterPro:IPR021575" FT /db_xref="InterPro:IPR021742" FT /db_xref="UniProtKB/TrEMBL:Q9YN80" FT /protein_id="AAY15738.1" FT /translation="MRAYFSVNDYISLLAKVGSVVERLCDPSVTLTEVMDEINDFNSFL FT ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEAKLRVLLDIIRRRFTREKLLCTSATD FT VVGFFVVRYMSSSHTSFETVMRTELKLVVKAVLSELSRTHKLDFSERAFTAYGILLQKG FT TVATVCGQFDINLVSPSCV" FT CDS 6525..7154 FT /codon_start=1 FT /product="p23" FT /db_xref="InterPro:IPR006893" FT /db_xref="UniProtKB/TrEMBL:Q52NS9" FT /protein_id="AAY15739.1" FT /translation="MDDTSGQTFVSVNLSDESNTASTKVENVKSEADRLEFLRKMNPFI FT IDALVRKTNYQGARFRARIIGVCVDCGRKHDKALKTERKCKVNNTQSQNEVAHMLMHDP FT VKYLNKRKARAFSNAEMFAIELVLYTKERQLAVDLAAEREKTRLARRHPIRSPEETPEH FT YKFGMTAKAMLPDINAVDVGDNEETSSEYPVSLSVSGGVLREHHFI" XX SQ Sequence 7368 BP; 2005 A; 1381 C; 1784 G; 2198 T; 0 other; acggggtttc aatggactgt gtgattcaag gatttttgac ttttctggtt ggtatagctg 60 tgttttcggc ctttgccgga ctgattatca ttgttataac gatttatcgg tgcacgacta 120 agcctgttag gaacacttct tcttacggca ctcacgccac tgtctaagcg gtatggtact 180 tctgggttta gactttggta ccacgttttc gacggtggct atggctacat cctctgagtt 240 agttatactc aaacaatcta attcatcgta catacctaca tgtttgtttt tgcatgcaga 300 ccctaacagc gtgtcttatg gttacgatgc ggaatattta gcggcttctg gggagcctgg 360 ttctttttac aaagatttga aacggtgggt tggttgcact gcgaagaact accaaaccta 420 cttacacaaa ctatcgcctt cctataaggt gacggtggaa gagtttggaa ctaagagtgt 480 gccagtccca tatttgtcac ctctgaataa cgatttggga ctcaatgtcg ctttaccttt 540 actaatcgct tcgtatgcca aatccatttt gtcggatgcg gaacgagtgt tcaatgtaag 600 ctgcactgga gttatatgtt cggtacccgc tggttataac acgttgcaac gagcttttac 660 gcagcagagt atatcgatgt cgggttactc ttgcgtgtac attattaacg aaccttcagc 720 agccgcatac tccactttac ctaagttgag ttcggcagat aaatatttag ccgtttacga 780 cttcggcggt gggactttcg acgtctctgt agttagcgtc agattgccta cgttcgccgt 840 taggagttcg ggtggtgaca tgaatttagg tggtagagat atcgacaaaa agttatctga 900 taaaatatac gaaatggcag attttatacc gcaaaaggaa ttgaacgttt ctagtttaaa 960 ggaagcttta tctcttcaaa ctgatccggt caaatatact gtaactcatc acggaatgag 1020 tgagacgata tcaattgatc aaacggcgtt gagggagata gcttcggtgt tcataaatcg 1080 aacgatagat atacttacgc aagttaaagt taagtctagt atgcccgaat cgcaaagttt 1140 aaagttagtg gtagtcggtg gaagctcgta cctaccagga ttgttggata ctttggcaac 1200 cgtgcctttc gtgtctggga tagtaccagt ggaagacgca agaaccgcgg tcgctagagg 1260 gtgtgcttta tatagtgagt gcttagatgg taggtccaag gccctactaa tagattgtat 1320 tacacatcat ttgtcggtta cgacgtttag cgcggactcg gtcgttgtcg cagcggccgg 1380 tagtccaatt ccttttgaag gagaacgaaa actcacgtta cgcaaatgcg ttagcacgtc 1440 taactatcaa gcaagaatgt ttgaaggaga ttacgaaaag gttttccgaa atgaacgtat 1500 ctacgcagct tcagtatcgt tgtttacttt aggagttaat tggcgtgtgc ctaaagacgt 1560 tgaaatgact ctcgtgacca aagtggactc aatgggtaaa gtggaatttt accttaaagg 1620 tccatctggt gaactagtca acgtgcaagg tacttcgcat tacgattata ctggtatgcc 1680 tcaccccact agaaatttgg tgaagcttag cgattacaat gtaaactccg ccgctttagt 1740 tttagctttg acattaactc gcgaaaaacg agaaaagttt cttttgcgga cattatttga 1800 cactttacta gcagatttgc gaaggacagc aagtttaagc gagtactcaa agaagtaccc 1860 gatcactcga aacgatatcg atgtcgtctc atcacgtatg gggatcgttg tttcgaaagt 1920 tttacgggga agcgatttgg aaagaatacc tctctgaatc aactcgaagt tttgatgaaa 1980 gaaacgtgtc gttggaccac actttgagtt cgggtgtggt cgtccgtagg cagagtcttt 2040 tgaatgcgcc tcaagggact ttcgagaacg agttagcgct attgtataat tcggtggtga 2100 ttaacgattt tgttgagttg actggtatgc cattgaagtc tttgatgaca ggtatcgagg 2160 accgtaaggt gcctgacgaa ttaatatccg ttgacccgca cgaagtcgga tgtagattca 2220 cgttaaacga cgtggaatca tatctaataa gcaggggcga ggattccgct gatgtaacgg 2280 cggtcgagca ttcgtggtgt ttgagtaact cttgtggtag actattaagt tcgaccgaga 2340 tagatgctta caaaaccttg gtgtttacca agaattttga tagtaatgta tctggagtga 2400 ctactaagtt agagacttat ctatcgtact gtatatcttt gtacaagaaa cactgcatga 2460 aagacgatga ttattttaat cttatcacac ctatgtttaa ttgtttggtg aaagtgctgg 2520 cgtcacttgg tttgttttat gagaaacata ctgacaatcc gctactgacc ggaatgctta 2580 tagagttttg cctagaaaat aaggtgtatt actctacttt taaagtaaat ttagacaacg 2640 ttagattgtt taagtctaaa gtgttgcctg tggtgttaac ggtttgggat atatctgagc 2700 ctgatgaccc agtggatgaa agggtgctaa ttcctttcga tcctactgat tttgtgctcg 2760 atttacctaa attgaatata cacgacacaa tggtggtggt gggtaatcaa atcagacagt 2820 tagagtacgt agtcgagagc gatgctttag acgatttatc tcaacacgtt gacatacgtt 2880 tagcagcgga caaccccgat ctacgcgttg atctgcgttg ggcagggatg tttgtctact 2940 acggtgttta tcggtgtgct attgatagag tggtagaacg accgacgtta tttagattgc 3000 cgcagaagtt attgagtcag gatgatggcg aatcgtgctc attgcgcatg agtgccgtcg 3060 aagctttatt taatctagtg caaaaggtga acagggacat aaacgttaga cgtcagttca 3120 tgggacgtca cagtaaagtg gctttgcgac tgtatcgcaa cttaggtttg aggtttccac 3180 cgatctcttc agttaggtta ccggttcatc acggttactt atacgtcgat ttttacaaaa 3240 gagtacctga cgatgctgtt actgccgacg aactcgaaag tttacgtcaa ttacgttcgt 3300 ccgtggacgt tatgtgtaag gacagggtgt caatcacacc tccaccattc aatcgactta 3360 gaagaggttc ttctagaaca tttagaggtc gaggcgcacg cggtgcgagc tcgcgtcata 3420 tgagcagaga cgtggcaact tccggtttta atttacctta tcatggcagg ttatacaaca 3480 cttcctaata ccgatgacaa agaaatgaat ccggtgagtg ccgctgtacc cggtaagtat 3540 ccggatgtca ttgaaaaatt tgtggccaac aggtccgtag acgcgttaat agaaggcgtc 3600 ataagtaagt tggataccaa ttcaatatac gaagattcca ctgaaaaatt tactggtgaa 3660 cacttgaaat acgttatggt tactatggat gctttcttat tagaaaacta caagacgaaa 3720 acggaagatc tgttggttca cttagctatg atccaaaaga ggttgtgcac tacatccacg 3780 agcactaaaa ccaagttccg cgataaaggt tgtattagtt acgtgcaagg gggttcgcga 3840 tataagttaa tggataaagt agtttttcct ttcattatat cgaaatttac cgacagggag 3900 actccgaacg ctctacgtaa gtatgcttgc actttcgagg agttacactt gtgtatggct 3960 aggttgagac ccgacttata cgaaaataaa aggacgacta aagccgggac tccacattta 4020 aagggctatt tatcagccga ctttctttcg ggttctctcc cagggtactc cgaacatgaa 4080 cgaggcatca ttcttcgagc gtctgagtct atgttagcta gacgtcaagg ttacgaggag 4140 gcaaccgagc ttcttaacct acgtgatttg ggtaagtact tgtagttggt ttggggacgg 4200 taatattatt attataccat cccttgagcg ctgctttaag ggtcgttaat tgacgactct 4260 tgatatattt actaggtttg aattatggac gacgaaacaa agaaattgaa gaacaaaaac 4320 aaggaaacga aagaaggcga cgatgttgtt gctgctgagt cttctttcgg ttccgtaaac 4380 ttacacatcg atccgactct gataacgatg aacgatgtgc gtcagttgag tactcaacag 4440 aatgctgctt tgaacaggga cttatttctt gctctgaaag ggaagtatcc taacttgcct 4500 gacaaagata aggactttca catagctatg atgttatacc gtttagcggt taagagttca 4560 tcattgcaaa gtgatgatga caccacgggc ataacgtaca ctcgggaggg tgttgaagta 4620 gatttgtctg acaaactttg gaccgacatc gtgtataatt ctaagggtat tggtaaccga 4680 actaacgccc ttcgagtctg gggtagaact aacgatgctc tttacttagc cttttgtaga 4740 cagaaccgca atttgagtta tggcggacgt ccgctagatg cagggattcc ggctgggtat 4800 cattatttgt gtgcagattt cttgaccgga gctggcttga ctgatttaga atgtgctgtg 4860 tacatacaag ctaaagaaca attgttgaaa aagcgagggg ctgatgaggt tgtagttact 4920 aatgtcaggc agcttgggaa atttaacaca cgttgatcta ttgcgttccg attcccggtt 4980 tctatcggga tggtggagtt tcatcgtgaa cgtgggtgat ataattgtcc ggttcgcgtt 5040 acacgttcct aatgaagata tgctgaatag tttttcagct atatcgaatt gtacgattat 5100 agcggatggt agtgctttac taaaggacaa tactgtggtt gaccgtttag aaagcatgaa 5160 tcctttggct tatttgttaa aattagcgaa aacgactact actatttgtt ttaccatgtc 5220 caataaggtt ctttttggta ctaccaaatc cgaaccactt agttgtttag ctatcacgtc 5280 ggatcgagtt ttattcaaag ttattatggg cgctaacgtt gatgattctc ggtgcggctg 5340 cagtatttgg ttttacaaca atggtacgtt tcaaaacgga ttgacccgtt gtaataatct 5400 cgtcactttg tttagcgcga cttagacacg aagtgaccgt tcggatttaa ttgctgcgat 5460 gagtattcga cgcgtgtggt taaaggttat agctgtaatt acagtgttgt ggtacggtaa 5520 ggaaccttct attagtgaag gttacaatgc tcttatgaat gacgacttta aatttatcga 5580 tacgcatttt tctaacgttt cttatgctaa gaaatgttac gatttggcta atttcgattt 5640 agactttttg cgcatcgtta tcattccttt gagtggtggc acggcgaatg aatcgcgttc 5700 tgatcgcact aacgtttcag agattgtcga atcgcatgta agcgaccgag acagaatgca 5760 catcttgttg cgtaataagc ggatccagat tccttcgctc ttaccctgcg ataactagag 5820 tctactcagt agtacgtcta ctagtataac gtattaaaca ctttagtgag gagttttgtt 5880 tgaatcaaac aatatgcgag cttactttag tgttaacgat tacataagcc ttttggctaa 5940 ggttggttca gttgtggaac gtttgtgcga tcccagcgta actctcacgg aagtgatgga 6000 cgaaattaat gattttaact cgtttctcgc tttggtgcac tctatgaagt cggacatgaa 6060 cggcgatcat caggatggtc accatgagat gggtgaacat aaatctcggt tgttgtgcaa 6120 tatagaggcg aaactgcgag tgcttctcga catcataaga cgtcggttta ctcgcgaaaa 6180 actgctctgt accagtgcta cagatgttgt gggcttcttc gtcgtgaggt acatgagttc 6240 tagtcacact agtttcgaaa ccgtaatgcg aacggaactg aagttggtgg ttaaagctgt 6300 gctgtcggaa ttgtcccgca cgcataaact agattttagc gagcgagcct ttacggctta 6360 cggtatcctt ttgcagaagg gcaccgtggc aaccgtttgc ggtcagtttg acattaattt 6420 agtttctccg tcttgcgtgt aggttaatac gcttctcaga acgtatggtt gtattaacta 6480 actttaattc gaacatattt attgtttaaa gtctgtgagt tacgatggat gatactagcg 6540 gacaaacttt cgtttctgtg aacctttctg acgaaagcaa cacggcaagc actaaagttg 6600 aaaacgtaaa atcggaagcg gatcgcttgg agtttttacg taaaatgaat ccctttatta 6660 ttgacgctct ggtgcggaaa accaattatc agggtgctcg ctttcgcgca agaataatag 6720 gagtgtgcgt ggattgtggt agaaaacacg acaaggcgct caagactgaa cgtaagtgta 6780 aggtcaacaa tacgcaatct cagaacgagg tggcgcatat gttgatgcac gatcccgtca 6840 agtatttgaa caaaagaaag gctagagcct tttctaacgc agagatgttt gcgattgaat 6900 tggttttgta caccaaggaa aggcaattgg cggtcgattt agccgctgaa agggagaaga 6960 cgagactggc tcgtagacac ccaatacgtt ctccggaaga aactccggaa cattataaat 7020 tcggtatgac tgctaaggca atgttaccgg acatcaacgc cgtagacgtt ggtgataacg 7080 aggaaacttc gtcggagtac ccagtgagtc tgagtgtttc tggcggagtt ctccgtgaac 7140 accacttcat ctgattgaag tggacggaat aagttccttg cggaacttta agtcgggttg 7200 gtaaaaaccc tttatgatgg tgatgtatca ctagacaata accggatggg taaagtcttt 7260 aaaatgatcg aggggaaaat taaccgtatc ctctcgttgg tctaagctcc cacagagtgg 7320 tagtggtctc aagtgaggct taacgtatgc gtgaaccaaa gaagttct 7368 //