ID AY995566; SV 1; linear; genomic RNA; STD; VRL; 7365 BP. XX AC AY995566; XX DT 26-APR-2005 (Rel. 83, Created) DT 26-APR-2005 (Rel. 83, Last updated, Version 1) XX DE Citrus tristeza virus isolate 464-2 p6, Hsp70h, p61, CPm, CP, p18, p13, DE p20, and p23 genes, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; Riboviria; Closteroviridae; Closterovirus. XX RN [1] RP 1-7365 RA Roy G., Yokomi R.K., Ullman D.E.; RT "Amino acid sequence variations associated with aphid transmissibility of RT Citrus tristeza virus"; RL Unpublished. XX RN [2] RP 1-7365 RA Roy G., Yokomi R.K., Ullman D.E.; RT ; RL Submitted (31-MAR-2005) to the INSDC. RL Plant Pathology, University of California at Davis, One Shields Avenue, RL Davis, CA 95616, USA XX DR MD5; 87118681ec6d097f8d621d37a6c86503. DR RFAM; RF00193; CTV_rep_sig. XX FH Key Location/Qualifiers FH FT source 1..7365 FT /organism="Citrus tristeza virus" FT /isolate="464-2" FT /mol_type="genomic RNA" FT /country="USA:Tulare county, California" FT /isolation_source="aphid transmission during 2000 from a FT naturally infected field tree" FT /db_xref="taxon:12162" FT CDS 12..167 FT /codon_start=1 FT /product="p6" FT /db_xref="GOA:O10470" FT /db_xref="InterPro:IPR009584" FT /db_xref="UniProtKB/TrEMBL:O10470" FT /protein_id="AAY15722.1" FT /translation="MDCVIQGFLTFLVGIAVFSAFAGLIIIVITIYRCTTKPVRNTSPY FT GTHATV" FT CDS 173..1957 FT /codon_start=1 FT /product="Hsp70h" FT /note="p65; similar to heat shock protein 70" FT /db_xref="GOA:Q52NQ5" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="UniProtKB/TrEMBL:Q52NQ5" FT /protein_id="AAY15723.1" FT /translation="MVLLGLDFGTTFSTVAMATSSELVILKQSNSSYIPTCLFLHADPN FT SVSYGYDAEYLAASGEPGSFYKDLKRWVGCTAKNYQTYLHKLSPSYKVMVEEFGTKSVP FT VPYLSPLNNDLGLSVALPLLIASYAKSILSDAERVFNVSCTGVICSVPAGYNTLQRAFT FT QQSISMSGYSCVYIINEPSAAAYSTLPKLSSADKYLAVYDFGGGTFDVSIVSVRLPTFA FT VRSSGGDMNLGGRDIDKKLSDKIYEMADFIPQKELNVSSLKEALSLQTDPVKYTVTHHG FT MSETISIDQTALREIASVFINRTIDILTQVKAKSSMPESQSLKLVVVGGSSYLPGLLDT FT LATVPFVSGIVPVEDARTAVARGCALYSECLDGRSKALLIDCITHHLSVTTFSADSVVV FT AAAGSPIPFEGERKLTLRKCVSTSNYQARMFEGDYEKVFRNERIYAASVSLFTLGVNWR FT VPNDVEMTLVTKVDSMGKVEFYLKGPSGELVNVQGTSRYDYTGMPHPTRNLVKLSDYNV FT NSAALVLALTLTREKREKFLLRTLFDTLLADLRRTASLSEYSKKYPITRNDIDVVSSRM FT GIVVSKVLRGSDLERIPL" FT CDS 1881..3488 FT /codon_start=1 FT /product="p61" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:Q52NR8" FT /protein_id="AAY15724.1" FT /translation="MSSHHVWGSLFRKFYGEAIWKEYLSESTRSFDERNVSLDHTLSSG FT VVVRRQSLLNAPQGTFENELALLYNSVVINDFVELTGMPLKSLMTGIEDRKVPDELISV FT DPHEVGCRFTLNDVESYLISRGEDSADVTAVEHSWCLSNSCGRLLSSTEIDAYKTLVFT FT KNFDSNVSGVTTKLETYLSYCISLYKKHCMKDDDYFNLITPMFNCLVKVLASLGLFYEK FT HTDNPLLTGMLIEFCLENKVYYSTFKVNLDNVRLFKSKVLPVVLTVWDISEPDDPVDER FT VLIPFDPTDFVLDLPKLNIHDTMVVVGNQIRQLEYVVESDALDDLSQHVDIRLAADNPD FT LRVDLRWAGMFVYYGVYRCAIDRVVERPTLFRLPQKLLSQDDGESCSLRMSAVEALFNL FT VQKVNRDINVRRQFMGRHSKVALRLYRNLGLRFPPISSVRLPVHHGYLYVDFYKRVPDD FT AVTADELESLRQLRSSVDVMCKDRVSITPPPFNRLRRGSSRTFRGRGARGASSRHMSRD FT VATSGFNLPYHGRLYNTS" FT CDS 3463..4185 FT /codon_start=1 FT /product="CPm" FT /note="minor capsid protein; p27" FT /db_xref="GOA:Q52NS5" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:Q52NS5" FT /protein_id="AAY15725.1" FT /translation="MAGYTTLPNTDDKEMNPVSAAVPGKYPDVIEKFVANRSVDALIEG FT VISKLDTNSIYEDSTEKFTGEHLKYVMVTMDAFLLENYKTKTEDLLVHLAMIQKRLCTT FT STSTKTKFRDKGCISYVQGGSRYKLMDKVVFPFIISKFTDRETPNALRKYACTFEELHL FT CMARLRPDLYENKRTTKAGTPHLKGYLSADFLSGSLPGYSEHERGIILRASESMLARRQ FT GYEEATELLNLRDLGKYL" FT CDS 4282..4953 FT /codon_start=1 FT /product="CP" FT /note="capsid protein; p25" FT /db_xref="GOA:Q06192" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:Q06192" FT /protein_id="AAY15726.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNDV FT RQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" FT CDS 4919..5422 FT /codon_start=1 FT /product="p18" FT /db_xref="InterPro:IPR008452" FT /db_xref="UniProtKB/TrEMBL:Q9YN82" FT /protein_id="AAY15727.1" FT /translation="MSGSLGNLTHVDLLRSDSRFLSGWWSFIVNVGDIIVRFALHVPNE FT DMLNSFSAISNCTIIADGSALLKDNTVVDRLESMNPLAYLLKLAKTTTTICFTMSNKVL FT FGTTKSEPLSCLAITSDRVLFKVIMGANVDDSRCGCSIWFYNNGTFQNGLTRCNNLVTL FT FSAT" FT CDS 5456..5815 FT /codon_start=1 FT /product="p13" FT /db_xref="InterPro:IPR009692" FT /db_xref="UniProtKB/TrEMBL:Q9IFW2" FT /protein_id="AAY15728.1" FT /translation="MSIRRVWLKVIAVITVLWYGKEPSISEGYNALMNDDFKFIDTHFS FT NVSYAKKCYDLANFDLDFLRIVIIPLSGGTANESRSDRTNVSEIVESHVSDRDRMHILL FT RNKRIQIPSLLPCDN" FT CDS 5891..6439 FT /codon_start=1 FT /product="p20" FT /db_xref="InterPro:IPR021575" FT /db_xref="InterPro:IPR021742" FT /db_xref="UniProtKB/TrEMBL:Q52NS2" FT /protein_id="AAY15729.1" FT /translation="MRAYFSVNDYISLLAKVGSVVERLCDPSVTLTEVMDEINDFNSFL FT ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEAKLRVLLDIIRRRFTREKLLCTSATD FT VVGFFVVRYMSSSHTSFETVMRTELKLVVKAVLSELSRTHKLDFSERAFAAYGILLQKG FT TVATVCGQFDINLVSPSCV" FT CDS 6522..7151 FT /codon_start=1 FT /product="p23" FT /db_xref="InterPro:IPR006893" FT /db_xref="UniProtKB/TrEMBL:Q52NS9" FT /protein_id="AAY15730.1" FT /translation="MDDTSGQTFVSVNLSDESNTASTKVENVKSEADRLEFLRKMNPFI FT IDALVRKTNYQGARFRARIIGVCVDCGRKHDKALKTERKCKVNNTQSQNEVAHMLMHDP FT VKYLNKRKARAFSNAEMFAIELVLYTKERQLAVDLAAEREKTRLARRHPIRSPEETPEH FT YKFGMTAKAMLPDINAVDVGDNEETSSEYPVSLSVSGGVLREHHFI" XX SQ Sequence 7365 BP; 2001 A; 1383 C; 1786 G; 2195 T; 0 other; acggggtttc aatggactgt gtgattcaag gatttttgac ttttctggtt ggtatagctg 60 tgttttcggc ctttgccgga ctgattatca ttgttataac gatttatcgg tgcacgacta 120 agcctgttag gaacacttct ccttacggca ctcacgccac tgtctaagcg gtatggtact 180 tctgggttta gactttggta ccacgttttc gacggtggct atggctacat cctctgagtt 240 agttatactc aaacaatcta attcatcgta catacctaca tgtttgtttt tgcatgcaga 300 ccctaacagc gtgtcttatg gttacgatgc ggaatattta gcggcttctg gggagcctgg 360 ttctttttac aaagatttga aacggtgggt tggttgcact gcgaagaact accaaaccta 420 cttacacaaa ctatcgcctt cctataaggt gatggtggaa gagtttggaa ctaagagtgt 480 gccagtccca tatttgtcac ctctgaataa cgatttggga ctcagtgtcg ctttaccttt 540 actaatcgct tcgtatgcca aatccatttt gtcggatgcg gaacgagtgt tcaatgtaag 600 ctgcactgga gttatatgtt cggtacccgc tggttataac acgttgcaac gagcttttac 660 gcagcagagt atatcgatgt cgggttactc ttgcgtgtac attattaacg aaccttcagc 720 agccgcgtac tccactttac ctaagttgag ttcggcagat aaatatttag ccgtttacga 780 cttcggcggt gggactttcg acgtctctat agttagcgtc agattgccta cgttcgccgt 840 taggagttcg ggtggtgaca tgaatttagg tggtagagat atcgacaaaa agttatctga 900 taaaatatac gaaatggcag attttatacc gcaaaaggaa ttgaacgttt ctagtttaaa 960 ggaagcttta tctcttcaaa ctgatccggt caaatatact gtaactcatc acggaatgag 1020 tgagacgata tcaattgatc aaacggcgtt gagggagata gcttcggtgt tcataaatcg 1080 aacgatagat atacttacgc aagttaaagc taagtctagt atgcccgaat cgcaaagttt 1140 aaagttagtg gtagtcggtg gaagctcgta cctaccagga ttgttggata ctttggcaac 1200 cgtgcctttc gtgtctggga tagtaccagt ggaagacgca agaaccgcgg tcgctagagg 1260 gtgtgcttta tatagtgagt gcttagatgg taggtccaag gccctactaa tagattgtat 1320 tacacatcat ttgtcggtta cgacgtttag cgcggactcg gtcgttgtcg cagcggccgg 1380 tagtccaatt ccttttgaag gagaacgaaa actcacgtta cgcaaatgcg ttagcacgtc 1440 taactatcaa gcaagaatgt tcgaaggaga ttacgaaaag gttttccgaa atgaacgtat 1500 ctacgcagct tcagtatcgt tgtttacttt aggagttaat tggcgtgtgc ctaacgacgt 1560 tgagatgact ctcgtgacca aagtggactc aatgggtaaa gtggaatttt accttaaagg 1620 tccatctggt gaactagtca acgtgcaagg tacttcgcgt tacgattata ctggtatgcc 1680 tcaccccact agaaatttgg tgaagcttag cgattacaat gtaaactccg ccgctttagt 1740 tttagctttg acattaactc gcgaaaaacg agaaaagttt cttttgcgga cattatttga 1800 cactttacta gcagatttgc gaaggacagc aagtttaagc gagtactcaa agaagtaccc 1860 gatcactcga aacgatatcg atgtcgtctc atcacgtatg gggatcgttg tttcgaaagt 1920 tttacgggga agcgatttgg aaagaatacc tctctgaatc aactcgaagt tttgatgaaa 1980 gaaacgtgtc gttggaccac actttgagtt cgggtgtggt cgtccgtagg cagagtcttt 2040 tgaatgcgcc tcaagggact ttcgagaacg agttagcgct attgtataat tcggtggtga 2100 ttaacgattt tgttgagttg actggtatgc cattgaagtc tttgatgaca ggtatcgagg 2160 accgtaaggt gcctgacgaa ttaatatccg ttgacccgca cgaagtcgga tgtagattca 2220 cgttaaacga cgtggaatca tatctaataa gcaggggtga ggattccgct gatgtaacgg 2280 cggtcgagca ttcgtggtgt ttgagtaact cttgtggtag actattaagt tcgaccgaga 2340 tagatgctta caaaaccttg gtgtttacca agaattttga tagtaatgta tctggagtga 2400 ctactaagtt agagacttat ctatcgtact gtatatcttt gtacaagaaa cactgcatga 2460 aagacgatga ttattttaat cttatcacac ctatgtttaa ttgtttggtg aaagtgctgg 2520 cgtcacttgg tttgttttat gagaaacata ctgacaatcc gctactgacc ggaatgctta 2580 tagagttttg cctagaaaat aaggtgtatt actctacttt taaagtaaat ctagacaacg 2640 ttagattgtt taagtctaaa gtgttgcctg tggtgttaac ggtttgggat atatctgagc 2700 ctgatgaccc agtggatgaa agggtgctaa ttcctttcga tcctactgat ttcgtgctcg 2760 atttacctaa attgaatata cacgacacaa tggtggtggt gggtaatcaa atcagacagt 2820 tagagtacgt agtcgagagc gatgctttag acgatttatc tcaacacgtt gacatacgtt 2880 tagcagcgga caaccccgat ctacgcgttg atctgcgttg ggcagggatg tttgtctact 2940 acggtgttta tcggtgtgct attgatagag tggtagaacg accgacgtta tttagattgc 3000 cgcagaagtt attgagtcag gatgatggcg aatcgtgctc attgcgcatg agtgccgtcg 3060 aagctttatt taatctagtg caaaaggtga acagggacat aaacgttaga cgtcagttca 3120 tgggacgtca cagtaaagtg gctttgcgac tgtatcgcaa cttaggtttg aggtttccac 3180 cgatctcttc agttaggtta ccggttcatc acggttactt atacgtcgat ttttacaaaa 3240 gagtacctga cgatgctgtt actgccgacg aactcgaaag tttacgtcaa ttacgttcgt 3300 ccgtggacgt tatgtgtaag gacagggtgt caatcacacc tccaccattc aatcgactta 3360 gaagaggttc ttctagaaca tttagaggtc gaggcgcacg cggtgcgagc tcgcgtcata 3420 tgagcagaga cgtggcaact tccggtttta atttacctta tcatggcagg ttatacaaca 3480 cttcctaata ccgatgacaa agaaatgaat ccggtgagtg ccgctgtacc cggtaagtat 3540 ccggatgtca ttgaaaaatt tgtggccaac aggtccgtag acgcgttaat agaaggcgtc 3600 ataagtaagt tggataccaa ttcaatatac gaagattcca ctgaaaaatt tactggtgaa 3660 cacttgaaat acgttatggt tactatggat gctttcttat tagaaaacta caagacgaaa 3720 acggaagatc tgttggttca cttagctatg atccaaaaga ggttgtgcac tacatccacg 3780 agcactaaaa ccaagttccg cgataaaggt tgtattagtt acgtgcaagg gggttcgcga 3840 tataagttaa tggataaagt agtttttcct ttcattatat cgaaatttac cgacagggag 3900 actccgaacg ctctacgtaa gtatgcttgc actttcgagg agttacactt gtgtatggct 3960 aggttgagac ccgacttata cgaaaataaa aggacgacta aagccgggac tccacattta 4020 aagggctatt tatcagccga ctttctttcg ggttctctcc cagggtactc cgaacatgaa 4080 cgaggcatca ttcttcgagc gtctgagtct atgttagcta gacgtcaagg ttacgaggag 4140 gcaaccgagc ttcttaacct acgtgatttg ggtaagtact tgtagttggt ttggggacgg 4200 taatattatt ataccatccc ttgagcgctg ctttaagggt cgttaattga cgactcttga 4260 tatatttact aggtttgaat tatggacgac gaaacaaaga aattgaagaa caaaaacaag 4320 gaaacgaaag aaggcgacga tgttgttgct gctgagtctt ctttcggttc cgtaaactta 4380 cacatcgatc cgactctgat aacgatgaac gatgtgcgtc agttgagtac tcaacagaat 4440 gctgctttga acagggactt atttcttgct ctgaaaggga agtatcctaa cttgcctgac 4500 aaagataagg actttcacat agctatgatg ttataccgtt tagcggttaa gagttcatca 4560 ttgcaaagtg atgatgacac cacgggcata acgtacactc gggagggtgt tgaagtagat 4620 ttgtctgaca aactttggac cgacatcgtg tataattcta agggtattgg taaccgaact 4680 aacgcccttc gagtctgggg tagaactaac gatgctcttt acttagcctt ttgtagacag 4740 aaccgcaatt tgagttatgg cggacgtccg ctagatgcag ggattccggc tgggtatcat 4800 tatttgtgtg cagatttctt gaccggagct ggcttgactg atttagaatg tgctgtgtac 4860 atacaagcta aagaacaatt gttgaaaaag cgaggggctg atgaggttgt agttactaat 4920 gtcaggcagc ttgggaaatt taacacacgt tgatctattg cgttccgatt cccggtttct 4980 atcgggatgg tggagtttca tcgtgaacgt gggtgatata attgtccggt tcgcgttaca 5040 cgttcctaat gaagatatgc tgaatagttt ttcagctata tcgaattgta cgattatagc 5100 ggatggtagt gctttactaa aggacaatac tgtggttgac cgtttagaaa gcatgaatcc 5160 tttggcttat ttgttaaaat tagcgaaaac gactactact atttgtttta ctatgtccaa 5220 taaggttctt tttggtacta ccaaatccga accacttagt tgtttagcca tcacgtcgga 5280 tcgagtttta ttcaaagtta ttatgggcgc taacgttgat gattctcgat gcggctgcag 5340 tatttggttt tacaacaatg gtacatttca aaacggattg acccgttgta ataatctcgt 5400 cactttgttt agcgcgactt agacacgaag tgaccgttcg gatttaattg ctgcgatgag 5460 tattcgacgc gtgtggttaa aggttatagc tgtaattaca gtgttgtggt acggtaagga 5520 accttctatt agtgaaggtt acaatgctct tatgaatgac gactttaaat ttatcgatac 5580 gcatttttct aacgtttctt atgctaagaa atgttacgat ttggctaatt tcgatttaga 5640 ctttttgcgc atcgttatca ttcctttgag tggtggcacg gcgaatgaat cgcgttctga 5700 tcgcactaac gtttcagaga ttgtcgaatc gcatgtaagc gaccgagaca gaatgcacat 5760 cttgttgcgt aataagcgga tccagattcc ttcgctctta ccttgcgata actagagtct 5820 actcagtagt acgtctacta gtataacgta ttaaacactt tagtgaggag ttttgtttga 5880 atcaaacaat atgcgagctt actttagtgt taacgattac ataagccttt tggctaaggt 5940 tggttcagtt gtggaacgtt tgtgcgatcc cagcgtaact ctcacggaag tgatggacga 6000 aattaatgat tttaactcgt ttctcgcttt ggtgcactct atgaagtcgg acatgaacgg 6060 cgatcatcag gatggtcacc atgagatggg tgaacataaa tctcggttgt tgtgcaatat 6120 agaggcgaaa ctgcgagtgc ttctcgacat cataagacgt cggtttactc gcgaaaaact 6180 gctctgtacc agtgctacag atgttgtggg cttcttcgtc gtgaggtaca tgagttctag 6240 tcacactagt ttcgaaaccg taatgcgaac ggaactgaag ttggtggtta aagctgtgct 6300 gtcggaattg tcccgcacgc ataaactaga ttttagcgag cgagcctttg cggcttacgg 6360 tatccttttg cagaagggca ccgtggcaac cgtttgcggt cagtttgaca ttaatttagt 6420 ttctccgtct tgcgtgtagg ttaatacgct tctcagaacg tatggttgta ttaactaact 6480 ttaattcgaa catatttatt gtttaaagtc tgtgagttac gatggatgat actagcggac 6540 aaactttcgt ttctgtgaac ctttctgacg aaagcaacac ggcaagcact aaagttgaaa 6600 acgtaaaatc ggaagcggat cgcttggagt ttttacgtaa aatgaatccc tttattattg 6660 acgctctggt gcggaaaacc aattatcagg gtgctcgctt tcgcgcaaga ataataggag 6720 tgtgcgtgga ttgtggtaga aaacacgaca aggcgctcaa gactgaacgt aagtgtaagg 6780 tcaacaatac gcaatctcag aacgaggtgg cgcatatgtt gatgcacgat cccgttaagt 6840 atttgaacaa aagaaaggct agagcctttt ctaacgcaga gatgtttgcg attgaattgg 6900 ttttgtacac caaggaaagg caattggcgg tcgatttagc cgctgaaagg gagaagacga 6960 gactggctcg tagacaccca atacgttctc cggaagaaac tccggaacat tataaattcg 7020 gtatgactgc taaggcaatg ttaccggaca tcaacgccgt agacgttggt gataacgagg 7080 aaacttcgtc ggagtaccca gtgagtctga gtgtttctgg cggagttctc cgtgaacacc 7140 acttcatctg attgaagtgg acggaataag ttccttgcgg aactttaagt cgggttggta 7200 aaaacccttt atgatggtga tgtatcacta gacaataacc ggatgggtaa agtctttaaa 7260 atgatcgagg ggaaaattaa ccgtatcctc tcgttggtct aagctcccac agagtggtag 7320 tggtctcaag tgaggcttaa cgtatgcgtg aaccaaagaa gttct 7365 //