ID AY965901; SV 2; circular; genomic DNA; STD; VRL; 2543 BP. XX AC AY965901; XX DT 01-APR-2006 (Rel. 87, Created) DT 20-DEC-2006 (Rel. 90, Last updated, Version 2) XX DE Tomato mottle virus segment DNA-B, complete sequence. XX KW . XX OS Tomato mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2543 RA Idris A.M., Baumann K., Bird J., Brown J.K.; RT "Interspecific molecular recombination, pseudorecombination and RT introduction contributed to genetic diversity of tomato infecting RT begomovirus in Puerto Rico"; RL Unpublished. XX RN [2] RP 1-2543 RA Idris A.M., Baumann K., Bird J., Brown J.K.; RT ; RL Submitted (17-MAR-2005) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; 545400ae7ae3d02d0b7e2ec814a4f27b. XX CC On Dec 18, 2006 this sequence version replaced gi:63115331. XX FH Key Location/Qualifiers FH FT source 1..2543 FT /organism="Tomato mottle virus" FT /segment="DNA-B" FT /mol_type="genomic DNA" FT /country="Puerto Rico" FT /db_xref="taxon:10835" FT CDS 339..1109 FT /codon_start=1 FT /product="BV1 protein" FT /db_xref="GOA:Q1X888" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:Q1X888" FT /protein_id="AAY33845.1" FT /translation="MYHLKCKRGLSYSNRRFNSRNNVFNRPVSGKRHDGKRRGGNFVKP FT NDEPKMLAQRIHENQYGPEFVLAHNSAISTFISYPILGKSEASRSRSYIKLKRLRFKGT FT VKIERVQSDLNMDGFVPKVEGVFSMVVVVDRKPHLGPSGCLHTFDELFGARINSHGNLT FT IVPSLKDRFYIRHVFKRVLSVEKDTLMVDVEGSTTLSNRRYNCWSTFKDLDRESCKGVY FT DNISKNALLVYYCWMSDTPANASSFVSFDLDYIG" FT CDS complement(1171..2052) FT /codon_start=1 FT /product="BC1 protein" FT /db_xref="GOA:Q1X889" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:Q1X889" FT /protein_id="AAY33846.1" FT /translation="MDSQLVNPPRAFNYIESHRDEYQLSHDLTEIILQFPSTASQLTAR FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTENESLQASWTFPIRCNIDLHYF FT SASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFTDKDVDFSHVDYGKWERKPIRCASMSRLGLRGPIEIRPGESWASRSTIGIGHSDAD FT SDVENELHPYRHLNRLSTGMLDPGESASIVGAQRTESNITMSMGQLNELIRTTVHECIN FT SNCKASQTKPLK" XX SQ Sequence 2543 BP; 695 A; 493 C; 553 G; 802 T; 0 other; accggatggc cgcgcccccc cccttttata cgcgcgcctc tttagtcgta tttccacgct 60 tcttcctgtt ggtgcgtatc cttcacttcc catctttttg agtatccttt aatttgaatt 120 aaaggttaaa actttatcgc gatgactaat catatcacat tgaccatgtg aaggacgtgg 180 cattattttg accatgctgc tgagtttatt tgctattatt gttctatcca taatctatat 240 attggattgg tcaggaatat tttgtttatc caactcagct gcataccacg tttatatcgt 300 tagctaaatt ttgattaatc ttagttaagt gtttgactat gtatcattta aagtgtaaac 360 gtggtttatc atattctaat cgaagattta actcacgtaa taatgtgttt aaccgtccag 420 tttctggtaa gagacatgat ggaaagcgtc ggggaggtaa tttcgtgaag cccaatgatg 480 agcccaagat gttagcccaa cgcatacatg agaatcagta tgggcctgaa tttgtgttgg 540 cccataactc agctatctcc acatttatca gttatcccat cttgggcaag tccgaagcta 600 gtcgaagtag gtcctatatc aagttgaaac gtcttcgttt caaagggact gtgaagattg 660 agcgtgttca atctgatttg aacatggatg gctttgtgcc taaagtcgaa ggagtattct 720 ctatggttgt tgttgtggat cgtaaaccac acttgggtcc ctctgggtgt ttgcatacat 780 ttgacgagct atttggtgca aggatcaata gtcatggcaa tctcactata gtaccttctc 840 tgaaagaccg cttctacatt agacatgtgt tcaagcgagt gctctcagtt gagaaggata 900 cgttgatggt ggacgttgaa ggatccacaa cactctctaa caggcgttac aactgctggt 960 ctacgtttaa agaccttgat cgtgaatcat gcaagggtgt ttatgataac attagcaaga 1020 acgccctgtt agtttattat tgctggatgt ctgacacgcc tgcgaatgca tcatcttttg 1080 tatcttttga tcttgattat attggttaac ttaacgaagt gtgtttgtct aaagatgatt 1140 aacataaatg aaaaatgtaa aaatagaatt ttattttaat ggtttcgtct gagacgcttt 1200 acaattacta ttaatacatt catggaccgt agtccgtatt aattcgttca actgtcccat 1260 agacattgta atgttggact ctgttctctg ggcccccaca atagaagcag actctcccgg 1320 atccagcatg cctgttgata gcctgtttag atgtctgtac gggtggagtt cgttctccac 1380 atctgagtcc gcatctgaat gccctatgcc tattgtactc cttgaagccc atgactcacc 1440 aggcctgatc tcaattgggc ctctaagccc aagtctggac atggacgcgc atctaatggg 1500 cttcctctcc catttaccgt aatccacatg ggaaaagtcc acatctttat ctgtgaactg 1560 tttggacagg atttttactg ttggtgcccg gaaggggatg tctactgagt gttttgctgt 1620 ggacaatttc agcttcccct taaacttggc gaagtgggtc cgttgatgaa cattcgtatc 1680 acaaaccctg taatacaact tccatggaat tgggtctttc aaggagaaga aggaagctga 1740 gaaatagtgg agatctatgt tgcacctgat cggaaatgtc catgatgcct gtaaagactc 1800 attctccgtc attcttttgt cgtgaatctc cactattacc gacccagtgg cgtttattgg 1860 tacttgttgt ctgtactcta tgacacagtg gtcgattttc atgcagctac ggctgagcct 1920 agcggttaac tgcgacgccg tggacggaaa ctgcagtatt atctcagtta ggtcatgaga 1980 aagctgatat tcgtcacggt gtgactctat gtagttgaat gccctaggag gattaactaa 2040 ctgagaatcc atatgaagaa aataaggccg cgcagcggca ctgtttgctg aagttgaatc 2100 agaagaagtc gaacaagctt tgacacggca gtttcgaact cgaagacgaa agacagccaa 2160 ctatattttc ttttttccaa taattcagct gtgctgaata taaagtttat gaagtgcgga 2220 aatgaaaaaa agtatatcag aattcgaagt gtttgagaca gaaaagaaat atgaaagaga 2280 attttggaga aatttgagta agaaggaatt tgtatatgaa ctaagaaacc tagggttgat 2340 gggtatttaa attggtaaag tgttcatccc atgagataga gtggcatttt tgtaataaga 2400 agaggtactc cagatgagtt actccaattg agccttctca aacttgctca ttcaattgga 2460 gtattagagt aacttatata taagaaccct ctatagaact attaatctgg ttcatacacg 2520 tggcggccat ccggtataat att 2543 //