ID AY962576; SV 1; linear; genomic RNA; STD; VRL; 3149 BP. XX AC AY962576; XX DT 01-OCT-2005 (Rel. 85, Created) DT 08-JUL-2006 (Rel. 88, Last updated, Version 2) XX DE Pieris rapae virus RNA-dependent RNA polymerase gene, complete cds. XX KW . XX OS Pieris rapae virus OC Viruses; Riboviria; Nodaviridae; unclassified Nodaviridae. XX RN [1] RP 1-3149 RX DOI; 10.1016/j.virusres.2005.09.003. RX PUBMED; 16780981. RA Liu C., Zhang J., Yi F., Wang J., Wang X., Jiang H., Xu J., Hu Y.; RT "Isolation and RNA1 nucleotide sequence determination of a new insect RT nodavirus from Pieris rapae larvae in Wuhan city, China"; RL Virus Res. 120(1-2):28-35(2006). XX RN [2] RP 1-3149 RA Liu C., Zhang J., Yi F., Wang J., Wang X., Hu Y.; RT ; RL Submitted (15-MAR-2005) to the INSDC. RL Life Science, Microbiology, Luojiashan, Wuhan, Hubei 430072, China XX DR MD5; 73b105c2a5cae171a33860ca011691a3. DR EuropePMC; PMC3126283; 21325414. DR EuropePMC; PMC3165748; 21734038. DR EuropePMC; PMC3347268; 22438534. DR EuropePMC; PMC3829395; 24019510. DR EuropePMC; PMC3934934; 24586921. DR EuropePMC; PMC4249075; 25210176. DR EuropePMC; PMC4488739; 26110586. XX FH Key Location/Qualifiers FH FT source 1..3149 FT /organism="Pieris rapae virus" FT /segment="RNA1" FT /host="Pieris rapae" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="insect larvae" FT /db_xref="taxon:327392" FT CDS 34..3078 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="protein A; non-structural protein" FT /db_xref="GOA:Q3KSM3" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q3KSM3" FT /protein_id="AAY27743.1" FT /translation="MSSVIKTIVVKTLQCTVKCVCVGVRQQYGLLRRHPKTIACALVGG FT IIAHDVLHLYAAVYRVENPWEFVPTEGPRGVIVLRVYNALRFTAAKWRWNCWTIFGKFP FT FNSEQFSRIMETSTERKPDLRPLLVPAHETIEVYPCNNIHSHPRSAEFRSSANEYLVRS FT VRRAGYPPYVVSSSKRDFCDGNRFFYCPKDFGMQFRNDPISNNHALVFTDVDYYANMNR FT WLQLFLPTCLYTLVPTRLNYSNDEFAYRFENNEIVYNVTGGGEYRHSLWDYKGDTVTVV FT DEYGNLLIFDIEQRRVQGDEQHRLIWLLPKAKITDPLWIVGPTEWYDKLLVRKTVQQGR FT LKILWEPIADDLSIGLHGSNYSVSLKGELFEAIRTRISCKDSTPYVSDVERMLREAKHK FT NFLTDAPILYHCFQDDVIIRPNVVKTGSFPVTYNAIPKKAPSVTEDPKMPGQVVTTPLV FT SQPALFAGKGFNADKACIEGRIEKVRNVTKFPIKYVRYAAEFVKLVIPETIAGTGVPNS FT IGMIREEQDKVAQRARFDRVAPIMSTQTENSIKAFIKTEMYAAAKAPRNISTMAPEITI FT QSSAYSLPMAKIFKKIPWYCPGKNPKEITLRLAEVCLQDPDHELEEGDYTCMDGTQSPD FT YSDLLLLPIYMRYFAKQYRGQFKNLYNQIYKQRATTSSGVPYNPEMTIRSGSSITTHAG FT TLNNAFNIYAALRDMGYDETTAWDKVGAVFGDDSLNANHQGEFHSYIEHVTKVLGMRYK FT SNLRERGQPVLFLGRYFVDPITSYDSFADPMRTIGKLHATANKNVSVEQGAANKAHGYI FT TTDSKTPIIGAWARRVLEITKKKFKNGTGEEQYRCSNAWPQKDEAAIRAAMAAVLEVDE FT AQLIAQNEAVLKVNSLDQFPVVFDTYYDHKQLAEVDGQLVGTDLHIKEEDERQPETSID FT SVPSTGPPPSNGDPNAGGKPTDGPSKGKRKVKGRRPRTAGDPATLRLTDAGSSRRVKPP FT RKLRPEAKRGGRPIETLVFKNSSLS" XX SQ Sequence 3149 BP; 969 A; 726 C; 718 G; 736 T; 0 other; ataaaacgta acgtgacaaa tataaacagc aagatgagtt cagtaatcaa gacaatagtc 60 gtaaaaacac tgcaatgcac tgtcaagtgc gtatgcgtgg gggtacgaca acagtatggg 120 ttactacgca ggcatcctaa gaccattgcc tgtgcactcg tgggaggtat aattgcccac 180 gatgttctac atttatacgc cgcagtctac cgggtcgaaa atccttggga attcgtacct 240 acggagggcc ctagaggcgt catcgtgctt agggtgtaca acgccctacg ttttaccgca 300 gctaaatggc ggtggaattg ctggactata tttggaaagt tccccttcaa cagcgaacag 360 ttctcgagaa tcatggaaac cagcacagaa cggaaaccag acttaagacc attgctcgtg 420 ccagcacacg agacaataga ggtgtaccct tgtaataaca tacactcaca cccccgttca 480 gcagaatttc gatcctctgc taatgaatat ctggtccgtt ctgttagacg tgctggttac 540 ccaccatatg tagtctcatc atcaaaacgt gacttttgcg atggtaaccg tttcttttac 600 tgcccgaaag acttcggaat gcagtttagg aatgatccaa tatccaacaa ccatgcatta 660 gtctttactg atgttgacta ctatgctaac atgaaccgat ggctacaatt gttcttacca 720 acctgcttat acaccttagt accaacacga ctcaactact caaacgatga gttcgcttac 780 cgttttgaga ataacgagat agtgtataac gtgacaggtg gcggtgagta tcgacatagc 840 ctatgggatt ataagggcga cacagtcaca gtcgtcgatg agtacgggaa cttactgata 900 tttgacattg aacagaggag agtacagggt gatgagcaac accggttaat ctggttgttg 960 cctaaagcta aaatcaccga ccccctctgg atcgtcggac ccacagaatg gtatgacaag 1020 ctactagtac gtaagaccgt tcagcagggc cggcttaaaa tactctggga gcctattgcc 1080 gatgatctga gcataggact tcacgggtca aattattcag tgtcattaaa gggtgaatta 1140 ttcgaagcaa tcaggactcg cattagctgt aaagacagca caccttatgt ttctgatgtt 1200 gagcgtatgc tacgtgaggc taagcataaa aactttctca cagatgcacc gatactctac 1260 cattgtttcc aagatgacgt cataataaga ccaaacgttg ttaaaactgg tagtttcccg 1320 gtcacctaca atgcaatacc taagaaagct ccatctgtaa ctgaggatcc gaaaatgcct 1380 ggccaggttg taacgacacc actagtttca caaccagcct tgtttgctgg aaaaggcttc 1440 aatgccgaca aagcttgcat agaaggacgt atcgagaaag tacggaatgt aacaaagttt 1500 ccgattaagt acgtgcgtta tgcagcagaa tttgtgaagc tagttatacc tgagaccatt 1560 gctggaactg gtgtaccgaa ctccatcggg atgatacggg aggaacaaga taaagtcgcc 1620 caaagagccc gatttgacag agttgcacca ataatgtcta ctcagactga aaatagtatt 1680 aaagcgttca tcaaaacaga gatgtacgca gctgccaaag ctccacgcaa catatcaaca 1740 atggcacctg agattactat acagtcgtca gcgtacagtc ttccaatggc taagatattc 1800 aagaaaatac cttggtattg cccggggaag aacccgaaag agataacctt acggttagcc 1860 gaggtttgtt tgcaagaccc tgatcacgaa ttagaagaag gcgattacac gtgtatggat 1920 ggcacccaga gtccagatta ttcggaccta ttactactgc caatatacat gcgttatttc 1980 gcgaagcaat atcgtggcca gtttaaaaat ctatataacc aaatatacaa acaacgtgca 2040 acaacatcct ctggtgtacc gtacaacccc gaaatgacta tacgttcggg aagctctatc 2100 actacacacg ctggaaccct taataacgca ttcaacattt atgctgcact gcgtgatatg 2160 gggtacgatg agacaacggc atgggataag gtaggggcag tgtttggtga tgatagcctt 2220 aacgctaatc accaaggaga gttccatagt tacattgaac atgtgacaaa agttcttggt 2280 atgcgctata agtcaaattt gcgcgaacgc ggacaaccag tccttttctt aggacgttac 2340 ttcgttgacc ctataacctc ttatgattct tttgcagacc ctatgagaac aatcgggaag 2400 ctgcatgcta cggcaaataa gaatgtcagt gttgaacaag gtgccgctaa caaagcacac 2460 ggttatataa caactgacag caagacgcca atcataggag cttgggctag acgagtactt 2520 gaaataacca agaaaaagtt caaaaatgga acaggagaag aacaataccg ctgcagcaac 2580 gcatggccac agaaagacga ggcggccata cgtgcagcaa tggcggcagt tctggaagtc 2640 gatgaggcac agcttatagc ccaaaatgaa gcagtgctta aagttaacag tcttgaccaa 2700 tttccagtgg tgtttgacac ctactatgac cacaaacagc ttgcagaagt tgatggtcaa 2760 ctagttggga cggacttgca tataaaggaa gaagatgaac gacaaccaga aacaagcatt 2820 gacagcgtac caagcactgg tccgccgcca agtaatggcg acccgaacgc tggtggaaaa 2880 ccaactgacg gcccttcaaa aggcaagcgg aaggttaaag gccgtaggcc tcgaaccgcc 2940 ggcgatcccg ccacacttcg tctcacggat gctggaagca gccgacgtgt taaaccccct 3000 cgcaagctac gccccgaagc caagcgggga ggcagaccca tcgaaactct agtctttaag 3060 aatagttcct taagctagct tagcttcgat ttgtgagagg ttcacctttc accacctgtg 3120 gagttatctc caccaccaat aaacaggtg 3149 //