ID AY956384; SV 1; linear; genomic RNA; STD; VRL; 5900 BP. XX AC AY956384; XX DT 23-JUN-2006 (Rel. 88, Created) DT 23-JUN-2006 (Rel. 88, Last updated, Version 1) XX DE Chickpea chlorotic stunt virus isolate Et-fb-am1, complete genome. XX KW . XX OS Chickpea chlorotic stunt virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5900 RX DOI; 10.1094/PHYTO-96-0437. RX PUBMED; 18944302. RA Abraham A.D., Menzel W., Lesemann D.E., Varrelmann M., Vetten H.J.; RT "Chickpea chlorotic stunt virus: A New Polerovirus Infecting Cool-Season RT Food Legumes in Ethiopia"; RL Phytopathology 96(5):437-446(2006). XX RN [2] RP 1-5900 RA Abraham A.D., Menzel W., Varrelmann M., Vetten H.J.; RT ; RL Submitted (07-MAR-2005) to the INSDC. RL Institute for Plant Virology, Microbiology and Biosafety, Federal RL Biological Research Center for Agriculture and Forestry, Messeweg 11-12, RL Braunschweig 38104, Germany XX DR MD5; 23e82e2a545d4a93f2db61476e15f453. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC3085786; 19347243. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC5072566; 27764211. XX FH Key Location/Qualifiers FH FT source 1..5900 FT /organism="Chickpea chlorotic stunt virus" FT /host="faba bean" FT /isolate="Et-fb-am1" FT /mol_type="genomic RNA" FT /country="Ethiopia:Ambo" FT /note="strain group E isolate" FT /db_xref="taxon:328430" FT gene 51..863 FT /gene="p0" FT CDS 51..863 FT /codon_start=1 FT /gene="p0" FT /product="P0 protein" FT /note="ORF0" FT /db_xref="GOA:Q17S72" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q17S72" FT /protein_id="AAY90037.1" FT /translation="MNVLINKFTSNFEINFSPSLSLATRRSLICLFLANSSEFIKISNE FT RDGTDKSTCYRSLLLLLPFLFGSFEFFGDQLVVPWNGGNNRHHGLFQRLLTNTRFCTLR FT LQPGREARYNPSIQITPTRVELYRYIQSPLVEGLSGHQDLLSLGLHHFTKLVGAYVRQL FT ERNNFCLRSEIILGDSVDLDVSHLGILLMDGSDHNNTHHAYSGSRVINCLHRCYGQALT FT SDIWELFGVDYCPCLQVPSFPLEAEIPEDSFQFDEDSEGEDDEGFWEL" FT gene 190..3470 FT /gene="p2" FT CDS join(190..1728,1728..3470) FT /codon_start=1 FT /ribosomal_slippage FT /gene="p2" FT /product="RNA-dependent RNA polymerase" FT /note="ORF1/ORF2; translated by -1 frameshift" FT /db_xref="GOA:Q17S71" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q17S71" FT /protein_id="AAY90038.1" FT /translation="MALTKVLAIALFCFCFHFFLGASSSLATNWSSPGMAGITAITGFS FT NDYLQTPGFVPYVYNLVEKPVTIPQSKLPLPELNYTDIFKVLWLKGYQDTRTCLVLAFT FT TSQSSLAHMYDNLSEITSACALRLSWAIVSIWTLVIWAFCSWMVRIITTHTMLIVAVGL FT LIACTVATAKLLHLIFGSFSVWIIVPVYRSLAFLWKLRSPKTVSNSMKIVKEKMTKGFG FT SYDMIMSPPKSCVLEMLHDDEQHCGYASCILLADGTVGLLTSYHVMEEAYWVKSNKTGN FT KIKTSDFRPLTQSQNADLSILVGPPNWQGLLGCSAAQYVTVKHLAAGDARIFYRKNGEW FT YSGVAKLVGPHKLNFVNVLSNTEPGFSGTPYFSGNKIVGVHTGGDEEENRNYMAAIPHL FT EGLTASKYIYETTAPKGRIFDEDLYQELLEEFSTQEARSIMKHKGFDMECSGKFKGRWV FT WIDCNNDLTPAEINNILSSKGKTRLESESPRFFEDAEEFYDAADSMELETSKKANFKRA FT SRRRPRKNRKRRLHPKDQERRWRHCPESDRGSRRENECSRVGETSDLQGGSEGAEEYKH FT PTKEEQKAQRKAWRREQANSFNYFFASQYKWEVPAASEEAPGFEACGKIPQFYHPKQKQ FT QGRWGEKVVAQHPEMGEKVRGFGWPEFGKEAELKSLRLQTARWLKRAESAKIPSSEERE FT RVIGKTVEAYQNVKSNCPAATRLNELSWDQFQKSFQPAVHSLELDAGIGVPYIAYGLPT FT HRGWVENHERQLLPILAQLTYDRLKKMSQVNFEDMSAEELVQKGLCDPIRVFVKGEPHK FT QAKLDEGRYRLIMSVSLVDQLVARVLFQEQNKLEITLWRSIPSKPGMGLSTDAQVTEFM FT SSLSQHVQVPVEDLVYDWEKHVLPTDCSGFDWSVSDWLLQDEMEVRNRLTENNNDLTKR FT LRGCWLKCLSNSVLALSDGSLFAQRVPGVQKSGSYNTSSTNSRIRVMCAFHAGASWCIA FT MGDDALESVDTDLSVYKDIGLKVEVSGQLEFCSHIFEKPDLAIPVNVGKMLYKLIYGYN FT PECGSIQVLRNYIDACTSVLNELRHDPEMVQLLYSWLLDPVLPQN" FT gene 190..2193 FT /gene="p1" FT CDS 190..2193 FT /codon_start=1 FT /gene="p1" FT /product="P1 protein" FT /note="ORF1" FT /db_xref="GOA:Q17S70" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q17S70" FT /protein_id="AAY90039.1" FT /translation="MALTKVLAIALFCFCFHFFLGASSSLATNWSSPGMAGITAITGFS FT NDYLQTPGFVPYVYNLVEKPVTIPQSKLPLPELNYTDIFKVLWLKGYQDTRTCLVLAFT FT TSQSSLAHMYDNLSEITSACALRLSWAIVSIWTLVIWAFCSWMVRIITTHTMLIVAVGL FT LIACTVATAKLLHLIFGSFSVWIIVPVYRSLAFLWKLRSPKTVSNSMKIVKEKMTKGFG FT SYDMIMSPPKSCVLEMLHDDEQHCGYASCILLADGTVGLLTSYHVMEEAYWVKSNKTGN FT KIKTSDFRPLTQSQNADLSILVGPPNWQGLLGCSAAQYVTVKHLAAGDARIFYRKNGEW FT YSGVAKLVGPHKLNFVNVLSNTEPGFSGTPYFSGNKIVGVHTGGDEEENRNYMAAIPHL FT EGLTASKYIYETTAPKGRIFDEDLYQELLEEFSTQEARSIMKHKGFDMECSGKFKGRWV FT WIDCNNDLTPAEINNILSSKGKTRLESESPRFFEDAEEFYDAADSMELETSKKANLNGL FT RGADLVKTGKEGSTQKTKSDDGDTVQKVIEALVAKMNVQELEKQVISKVAQKVQKNTST FT PPKKNRRRRGKRGGESKQIALTTSSPPSTSGKYLPPQKRPQGLKPVEKSPNSTIQSKNN FT KVDGERKSSPNTQRWVKKSEASAGQSSAKKLN" FT gene 3663..5723 FT /gene="p5" FT CDS 3663..5723 FT /codon_start=1 FT /transl_except=(pos:4263..4265,aa:OTHER) FT /gene="p5" FT /product="CP-readthrough protein" FT /note="ORF3 and ORF5; translated by in-frame readthrough of FT ORF3 stop codon" FT /db_xref="GOA:Q17S69" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q17S69" FT /protein_id="AAY90040.1" FT /translation="MNTVVVRNNGRRRRNRRTVQRARRRNPVVVVEAPRQPQRGRRRRR FT NRRRASGRSTAGRRGSSETFVFSKDNLAGSSSGSITFGPSLSDCPAFSSGILRAYHEYK FT ISMVKLEFISEAASTSSGSIAYELDPHCKSTSLGSYINKFGITSNGQRTFAARLINGIE FT WHSSDEDQFRILYKGNGGSAIAGSFRITIKCQTQNPKXVDDSSPPGPSPTPPPPPPAPA FT PEPQPCKKYRFWGYEGVPQNKIVTAQNDRNIDVRGLNYVKFYKWEDDNWTEVNLQANYS FT VNNSQYAEPYMIIPASKGKFHVYLECDGQMAVKSVGGKADNSWRGLIAYDTSRRMWNVG FT NYKGCTIENYRKTDSFVLGHPDVEVNDCKFDKARGVEADWYASFQLTCDDDEGSWILYA FT PPIPKDSLYNYTVSYGEYTENMCEWGAVSISIDEDNSSTGNEVKIKPGRGHLVHRALPE FT GTLEQQPLEDVQVKEYFWKENQSETTSDSDGESFISKIKGKLPMTTKLPPKGFLSRLKP FT SEKEETARSKESEVKPEDVDNLVRAAGKEFQYGIYDDARERLHNKEFNQNMEELESDLE FT EINRLEPPDIDVWRGKDTAETVAVFEDPWEFFRKQEDPNPPKLKGTLSKIGSSIGGGSL FT SGGNLRRAAESVNEDSMKFKLSTTERNQYERIRKSKGETAARVYLRSRFSS" FT gene 3663..4265 FT /gene="p3" FT CDS 3663..4265 FT /codon_start=1 FT /gene="p3" FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:Q17S68" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q17S68" FT /protein_id="AAY90041.1" FT /translation="MNTVVVRNNGRRRRNRRTVQRARRRNPVVVVEAPRQPQRGRRRRR FT NRRRASGRSTAGRRGSSETFVFSKDNLAGSSSGSITFGPSLSDCPAFSSGILRAYHEYK FT ISMVKLEFISEAASTSSGSIAYELDPHCKSTSLGSYINKFGITSNGQRTFAARLINGIE FT WHSSDEDQFRILYKGNGGSAIAGSFRITIKCQTQNPK" FT gene 3688..4269 FT /gene="p4" FT CDS 3688..4269 FT /codon_start=1 FT /gene="p4" FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q17S67" FT /protein_id="AAY90042.1" FT /translation="MAEGGEIGVLFSGLGAATQWLWSKPLGSHSAEDDEEETVDALQEE FT AQLEDEGLARHLCFRKTTSRVVPQEVSRSGRVYQTAQLSALEYSGPTMNIKSQWSSWSS FT SPRPLPPPQGRSLTSLIPTANPLRLGPTSINLESPRMDKGLLQRGLLTESNGTPQTRTS FT SGYFIKEMEAPPSRGHSGSPSSAKLRIRNR" XX SQ Sequence 5900 BP; 1750 A; 1300 C; 1424 G; 1426 T; 0 other; acaaaagaaa gcaagaggga aaacttcacg ctgagtatct cgcgaagttt atgaacgtgt 60 tgattaacaa attcacttca aattttgaga tcaatttctc accctcactt tctctcgcaa 120 ccagaagatc gttaatttgc ttgttccttg caaactcaag cgaatttatt aaaatatcaa 180 acgagcgaga tggcactgac aaaagtactt gctatcgctc tcttctgctt ttgcttccat 240 ttctttttgg gagcttcgag ttctttggcg accaactggt cgtcccctgg aatggcggga 300 ataaccgcca tcacgggctt ttccaacgat tacttacaaa caccaggttt tgtaccttac 360 gtttacaacc tggtagagaa gcccgttaca atccctcaat ccaaattacc cctaccagag 420 ttgaactata cagatatatt caaagtcctc tggttgaagg gttatcagga caccaggacc 480 tgcttagtct tggccttcac cacttcacaa agctcgttgg cgcatatgta cgacaacttg 540 agcgaaataa cttctgcctg cgctctgaga ttatcttggg cgatagtgtc gatctggacg 600 ttagtcatct gggcattttg ctcatggatg gttcggatca taacaacaca caccatgctt 660 atagtggcag tagggttatt aattgcttgc accgttgcta cggccaagct cttacatctg 720 atatttggga gcttttcggt gtggattatt gtccctgttt acaggtccct agctttcctt 780 tggaagctga gatccccgaa gacagtttcc aattcgatga agatagtgaa ggagaagatg 840 acgaagggtt ttgggagcta tgatatgatt atgtcccctc caaaaagttg cgtgctcgaa 900 atgcttcacg atgatgaaca acattgtggt tatgcgagct gcatattatt agctgatgga 960 acagtggggt tgttgacttc atatcacgtc atggaggaag cttactgggt taagtctaac 1020 aagactggaa ataaaattaa gaccagtgac tttcgaccac ttactcaatc ccaaaacgct 1080 gatttgtcta ttttggtagg tccacccaac tggcaagggc ttttgggctg ttcagcagcc 1140 caatatgtta cagtaaaaca tctagccgcc ggtgacgctc gtatcttcta ccgtaaaaac 1200 ggtgaatggt actctggagt ggctaagttg gtaggacctc acaaattgaa cttcgtcaat 1260 gtcctgtcaa ataccgagcc tgggttcagc ggcacccctt attttagtgg aaacaaaata 1320 gttggagtac acacaggagg ggatgaagaa gagaatagaa attatatggc cgctatccct 1380 catcttgaag gtttgactgc gagcaaatat atatatgaaa cgactgctcc caaaggtcga 1440 atctttgacg aagatttata ccaagaattg ctagaagagt tttccacgca agaagcacga 1500 tcgataatga aacataaagg cttcgatatg gaatgttctg gaaagtttaa aggcagatgg 1560 gtttggatag attgtaataa tgatctcacc cctgccgaga taaataacat tctctctagc 1620 aaagggaaaa ccaggcttga gtcagaaagc ccgcgattct tcgaagatgc cgaagaattt 1680 tatgatgccg ctgactcgat ggaacttgag acttcaaaga aggctaattt aaacgggctt 1740 cgaggcgccg acctcgtaaa aaccggaaaa gaaggctcca cccaaaagac caagagcgac 1800 gatggagaca ctgtccagaa agtgatagag gctctcgtcg cgaaaatgaa tgttcaagag 1860 ttggagaaac aagtgatctc caaggtggct cagaaggtgc agaagaatac aagcacccca 1920 ccaaagaaga acagaaggcg cagaggaaag cgtggaggag agagcaagca aatagcttta 1980 actacttctt cgcctcccag tacaagtggg aagtacctgc cgcctcagaa gaggccccag 2040 ggtttgaagc ctgtggaaaa atcccccaat tctaccatcc aaagcaaaaa caacaaggta 2100 gatggggaga gaaagtcgtc gcccaacacc cagagatggg tgaaaaagtc agaggcttcg 2160 gctggccaga gttcggcaaa gaagctgaac tgaaatccct gcggttgcaa accgcgaggt 2220 ggctcaaacg cgctgagtca gctaaaatcc cgtcgtctga ggaacgggag cgcgttatcg 2280 gtaaaacagt agaggcatat caaaatgtga aatcaaattg ccctgctgca acaaggctga 2340 acgagctgag ttgggatcaa tttcaaaaat cctttcaacc agccgttcac tccctcgaac 2400 ttgatgctgg aattggcgtt ccttatatag catatggtct ccccacccat cgaggatggg 2460 ttgagaacca cgaacgccag cttctcccta ttttggctca gttgacctac gaccgactaa 2520 agaagatgtc gcaggttaac tttgaagaca tgagtgctga ggagttagta cagaagggtc 2580 tatgtgaccc catcagagta ttcgtcaagg gagaaccgca taaacaggca aaacttgatg 2640 agggtcgtta ccgcctcatc atgtcggtta gccttgtaga ccaattggta gcccgggtat 2700 tgtttcaaga acaaaataag ctagagataa ctctctggcg atcaatacca agcaaacccg 2760 gaatggggct ttctacggat gcccaagtga cggagttcat gagttctctg tcccaacatg 2820 tgcaagtacc agtcgaagac ttggtatatg actgggaaaa gcatgtgttg cccacagatt 2880 gctccggatt tgactggagc gtctccgact ggctcctcca agatgaaatg gaggttagaa 2940 atcgcctcac tgagaataac aacgacctta ccaagcgcct tcgtggctgc tggttgaagt 3000 gtctatctaa cagtgtcttg gcgttatccg atggcagcct ctttgcccaa cgcgtaccag 3060 gagttcagaa gtctggaagc tacaacacta gctcgaccaa ctctagaatc cgcgtaatgt 3120 gtgcttttca cgctggcgcc tcgtggtgta tagccatggg agatgatgct ttggagtctg 3180 tggacactga cctatcagtg tataaagata taggtttaaa agtcgaggtt tcaggacaac 3240 tggaattttg ctctcacatt tttgagaagc ctgacctcgc cattccggta aacgtaggaa 3300 aaatgttgta caaactcatc tacgggtaca atccggaatg tggatccatc caggtcctca 3360 ggaattatat tgacgcttgc acctcagtgc taaatgaatt gcgtcacgac cctgagatgg 3420 tccaactcct ctactcgtgg ctccttgatc cagtgttgcc acaaaattaa tcaagagaga 3480 ggagtacaga gatagccgac taactagttg cgagatcgga gtctcagtct agttcattgc 3540 aaagatagat tacaaatttt tagctggttt tgccgctggc tttgtgacat caatcccaat 3600 atctgtctgt gcaatatata tcatctacct taaaatttca acccacgtga gatcaatagt 3660 caatgaatac ggtcgtggtt agaaataatg gcagaaggag gagaaatagg cgtactgttc 3720 agcgggctag gcgccgcaac ccagtggttg tggtcgaagc ccctaggcag ccacagcgcg 3780 gaagacgacg aagaagaaac cgtcgacgcg cttcaggaag aagcacagct ggaagacgag 3840 ggtctagcga gacatttgtg ttttcgaaag acaacctcgc gggtagttcc tcaggaagta 3900 tcacgttcgg gccgagtcta tcagactgcc cagctttcag ctctggaata ctcagggcct 3960 accatgaata taaaatctca atggtcaagt tggagttcat ctccgaggcc gcttccacct 4020 cctcagggtc gatcgcttac gagcttgatc cccactgcaa atccacttcg cttgggtcct 4080 acatcaataa atttggaatc acctcgaatg gacaaaggac ttttgcagcg aggcttatta 4140 acggaatcga atggcactcc tcagacgagg accagttcag gatactttat aaaggaaatg 4200 gaggctccgc catcgcgggg tcattcagga tcaccatcaa gtgccaaact cagaatccga 4260 aataggtaga tgacagttcc ccccccggac caagtccaac accacctcca cctcccccag 4320 caccagctcc agaaccacaa ccttgtaaga aatataggtt ttggggttat gaaggtgtgc 4380 cacagaataa gatagtcaca gcgcagaacg atagaaatat cgatgtgcgt ggcttgaatt 4440 atgttaagtt ttataaatgg gaggatgata attggacgga agtcaacctt caagccaatt 4500 attcagtgaa caattcgcag tatgcagaac catacatgat catccccgca tctaaaggca 4560 agttccacgt ctaccttgaa tgtgatggac agatggctgt caaaagtgtg ggtggaaaag 4620 cggataattc ctggagaggc ttgattgcgt atgacacctc cagaagaatg tggaatgttg 4680 gtaattacaa aggctgtacc atagaaaatt ataggaaaac ggacagcttt gtgcttggtc 4740 accctgatgt tgaagtcaat gattgcaaat ttgataaagc caggggagta gaagcagatt 4800 ggtacgcgtc gttccagtta acttgtgatg acgacgaagg atcttggatc ctgtacgccc 4860 cacctatccc aaaggacagc ttgtataact atactgtctc ttatggagaa tatacagaaa 4920 atatgtgtga atggggcgcc gtatcaatat caattgatga agacaacagc tctacaggga 4980 acgaagtcaa aattaaaccc ggaagggggc atttagtgca ccgggctctg ccagaaggaa 5040 cactggaaca acaacccttg gaggatgtcc aagtaaaaga atacttctgg aaggaaaacc 5100 agtctgaaac cacaagcgat tcggacggtg agtcattcat tagcaaaatc aagggaaaat 5160 tacctatgac gactaaactc ccgccgaaag gctttctctc gcgtcttaaa ccttcggaaa 5220 aagaagaaac agccagatca aaagaatctg aggtcaagcc ggaggatgtc gacaacctgg 5280 ttcgagccgc aggcaaagaa ttccagtatg gcatttatga tgatgctaga gagaggctcc 5340 ataataagga atttaaccag aacatggaag aactggagtc agaccttgaa gaaataaatc 5400 gcttggaacc tcctgacatt gatgtttggc gaggcaagga cacagctgaa actgtagctg 5460 tgttcgaaga tccgtgggag tttttccgta aacaggaaga tcccaatcca cctaaattaa 5520 aaggaacatt atcaaaaata ggttcatcca taggtggagg gtctctctca ggagggaact 5580 tgagaagagc cgctgaaagt gttaacgaag attctatgaa atttaaactg tcgaccactg 5640 agcgcaacca gtacgaaaga attcggaaat caaaaggtga aacagcagct cgtgtgtact 5700 tacgcagcag gttctcttca tagtggtata tcaaccgccc actctaaaga tacggttttc 5760 accaaatatg ggtgagttca tatttcctag cttctggatt tgaagcaaac tcgggccgca 5820 gaggataaat gtcggaacga aagcgaggag cgagtaggcc ccagtgttat acgtgggtat 5880 ttcctacggc actgcggtgt 5900 //