ID   AY954248; SV 1; linear; genomic RNA; STD; VRL; 1625 BP.
XX
AC   AY954248;
XX
DT   01-OCT-2005 (Rel. 85, Created)
DT   01-OCT-2005 (Rel. 85, Last updated, Version 1)
XX
DE   Twisted-stalk chlorotic streak virus Denali 2001 polyprotein gene, partial
DE   cds and 3' UTR.
XX
KW   .
XX
OS   Twisted-stalk chlorotic streak virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1625
RA   Robertson N.L.;
RT   "A newly described plant disease complex involving two distinct viruses in
RT   a native Alaskan lily, Streptopus amplexifolius";
RL   Unpublished.
XX
RN   [2]
RP   1-1625
RA   Robertson N.L.;
RT   ;
RL   Submitted (04-MAR-2005) to the INSDC.
RL   ARS, USDA, 533 East Fireweed Ave., Palmer, AK 99645, USA
XX
DR   MD5; 9a6ab754fb8af580bfeb3a0b1f42f71a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1625
FT                   /organism="Twisted-stalk chlorotic streak virus"
FT                   /host="Streptopus amplexifolius"
FT                   /isolate="Denali 2001"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Alaska, Denali State Park"
FT                   /note="TsCSV"
FT                   /db_xref="taxon:329048"
FT   CDS             <1..1441
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /note="contains Nib and coat protein"
FT                   /db_xref="GOA:Q3KSX1"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q3KSX1"
FT                   /protein_id="AAY42202.1"
FT                   /translation="STVVDNTLMVLLAMYYVFSETGLTHDTCKFFANGDDLIIAVEPSM
FT                   ASKLDVFQGLFASLGLNYDFSNRATDKKDLWFMSHCAMEVEGILIPKLEPERIVSILEW
FT                   DRSHEPAHRLEAICASMIEAWGYNQLLHEIRRFYAWVLEQTPYKQLAEEGRAPYLAETA
FT                   LKKLYLNVTATAEELEKYSFSLAEDYEVSGLLDEVEFQDDTLDAGREQSRSKKEPAPPP
FT                   EPTQGAETSEADRTDTSTRRRDRDVDAGTIGTFTVPRLQNKAMKLKLPMVAGKSAVNLE
FT                   HLLTYKPAQVDISKTRATKAQFANWFKAIQEECEVDESGMQIILNGFMVWCIENGTSPN
FT                   SNGTWTIMDGEEQIEYPLKPFIENAHPTLRQVMAHFSDLAEAYIEMRNRTEVYMPRYGR
FT                   QRNLRDMSLARCAFDFYEITSKTPTRFVEAHFQMKAAALRGSDSRLFGLDGNVGTKEED
FT                   TERHTTEDVNRSMHTLLGVRQ"
FT   3'UTR           1442..>1625
XX
SQ   Sequence 1625 BP; 475 A; 341 C; 417 G; 392 T; 0 other;
     atccactgta gtcgataaca cactcatggt gttattagcg atgtattacg tgttctctga        60
     gactggtttg acacacgaca catgcaaatt ctttgctaat ggagacgatc taatcatagc       120
     agtcgagccg tcaatggcga gtaaattgga tgtgtttcaa gggttatttg cctcattggg       180
     attgaactat gacttctcga atcgcgcgac ggataagaaa gacctttggt tcatgtcgca       240
     ctgcgcaatg gaggtggagg ggatattaat tccaaaactg gaaccagaac gtatcgtttc       300
     aattcttgag tgggatagat cccatgagcc agcgcacaga ttggaagcga tttgcgcatc       360
     tatgatagag gcatggggat acaatcagct gttacatgag atacggcgct tttatgcatg       420
     ggtgcttgaa caaacaccgt acaagcaact cgcggaggaa ggtcgagctc cttacttagc       480
     tgagacagca ctgaagaaat tatacttaaa tgtcacagca acagcagagg aactcgaaaa       540
     gtatagcttt tcattggccg aggactatga agtcagtggt ctacttgatg aagttgagtt       600
     ccaggatgac acacttgatg caggccgcga acagagcaga agcaagaagg aaccggcgcc       660
     accgccagaa ccaacacaag gagctgagac gtcggaggca gataggaccg acacgtccac       720
     aaggcggcga gatcgcgatg tcgatgctgg aacaattggc acattcactg tgccacgatt       780
     gcagaataaa gcgatgaaac tcaaactgcc catggttgct ggaaaatctg cagtgaactt       840
     ggagcatctc ctgacatata aaccagccca agtggatatc tcaaaaactc gtgcaacaaa       900
     ggcacagttt gctaactggt ttaaagcaat acaagaggag tgtgaggtgg atgagagcgg       960
     catgcaaatc attctgaacg gttttatggt ttggtgtatt gaaaatggaa catctccaaa      1020
     tagcaacgga acctggacga ttatggatgg cgaggaacaa atagaatatc cactcaaacc      1080
     atttattgaa aatgctcatc caactctgcg acaagtgatg gcacacttca gcgacctagc      1140
     agaggcctat attgagatga gaaaccgtac cgaagtgtac atgccgcgat atggtcgtca      1200
     gcggaattta agggacatga gtcttgcacg ttgtgcattc gatttttacg aaataacctc      1260
     aaaaacccct acacggtttg ttgaggcgca tttccagatg aaagcagctg ccctgcgtgg      1320
     cagtgatagc cgactatttg gactggatgg caacgtcggg acgaaagagg aagatacaga      1380
     gaggcacacg acagaggatg ttaatcgcag catgcacact ctgttgggcg ttcgtcagtg      1440
     agcttcgcgt atattatatt atactactgt ttagtataat cataagtatg gtctgtcaca      1500
     tctaccgttc tatttcttat taccggggtt acctggatat gtaaggaagc cgctctgctc      1560
     actcacacgt acgactcaca gcgaggtgtt cctccgatgg ttactggtgc gtttgcaata      1620
     gtggg                                                                  1625
//