ID   AY943945; SV 1; linear; genomic RNA; STD; VRL; 1667 BP.
XX
AC   AY943945;
XX
DT   02-MAR-2006 (Rel. 87, Created)
DT   02-MAR-2006 (Rel. 87, Last updated, Version 1)
XX
DE   Vanilla distortion mosaic virus isolate VMM1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Vanilla distortion mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1667
RA   Smitha R., Jalali S., Krishnareddy M.;
RT   "Molecular characterization of a new potyvirus infecting vanilla (Vanilla
RT   planifolia)";
RL   Unpublished.
XX
RN   [2]
RP   1-1667
RA   Smitha R., Jalali S., Krishnareddy M.;
RT   ;
RL   Submitted (24-FEB-2005) to the INSDC.
RL   Division of Plant Pathology, Indian Institute of Horticultural Research,
RL   Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
DR   MD5; 02450a0aab7c3f678f9cd2cb898a6b16.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1667
FT                   /organism="Vanilla distortion mosaic virus"
FT                   /host="Vanilla planifolia"
FT                   /isolate="VMM1"
FT                   /ecotype="Mudigere"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /isolation_source="infected leaves"
FT                   /db_xref="taxon:326202"
FT   CDS             <1..1470
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q29TU1"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q29TU1"
FT                   /protein_id="AAY23364.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAMRYALLAEGIPNEEQNDICRYYVNG
FT                   DDLIIAVAPTHEELYDGMQSRFAQLGLNYDFSSRTRNKSELWFMSHQGVLRDGIFIPKL
FT                   EKERVVSILEWSRSSIPEHRLEAICAAMVEAWGYDDLVHEIRKFYAWVLEQAPYNELAR
FT                   QGKAPYISEVALKSLYTSEEATESEIQRYLSACLNFYLNREEDDTVYHQGDKMDAGNPP
FT                   GKDKETTPATGSGEVSGGDKQIPGNQQVSKLDRDVNAGTSGTFQVPRIKTMTSKMRMPK
FT                   IRGKTALNLDHLLLYVPDQLDLSNTRATQKQFDYWYDNVSREYEVDDNKMQILLNGLMV
FT                   WCIENGTSPNIAGEWVMMDGAEQVTFPIKPLLEYAQPTFRQIMAHFSNVAEAYIEMRNM
FT                   KEPYMPRYGRMRNLNDMSLARYAFDFYEITSKTPSRARETHMQMKAAALHGSVSNMFGL
FT                   DGNVATTSENTERHTASDVNSNMHSLLGMRM"
FT   mat_peptide     <1..636
FT                   /product="NIb protein"
FT                   /note="nuclear inclusion body protein"
FT   mat_peptide     637..1467
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT   3'UTR           1471..1667
XX
SQ   Sequence 1667 BP; 542 A; 353 C; 404 G; 368 T; 0 other;
     ggtaacaaca gtgggcagcc atccacagtg gttgataaca cgctcatggt gatcctggcc        60
     atgcgatacg cattactcgc agaaggcatc cccaatgaag aacaaaatga catatgccga       120
     tattatgtca atggggatga tttgataatc gcagtggcac ctacacacga ggagttatac       180
     gacggtatgc aatctcgatt cgcacagctt ggtctcaact acgatttctc ttcgagaacg       240
     cgcaacaaat cggaattgtg gtttatgtcg caccagggcg tacttagaga cggcattttc       300
     atcccaaagt tggagaaaga aagagtagtc tcaatcttag agtggagtcg ttcgtcaatt       360
     ccagaacata ggctcgaggc aatctgcgca gctatggtgg aagcatgggg atatgatgat       420
     ttggtgcatg aaatccggaa gttctatgca tgggttttgg aacaagcccc ttacaatgaa       480
     ctggcccgac aggggaaggc tccatacatc tcggaagttg ccttaaagag cttatacaca       540
     tcggaggaag ctacagaaag tgagattcaa cgttatctat ccgcttgtct caacttctac       600
     ctaaacagag aagaggacga cacagtgtat catcaagggg acaagatgga tgcaggtaac       660
     ccacccggga aggacaagga aacaacacct gccactggta gcggagaagt aagtgggggc       720
     gataaacaaa ttcctggcaa ccagcaggtc tccaaactag atagggatgt gaacgctgga       780
     acaagtggta ctttccaagt ccctagaatt aaaacgatga catcaaaaat gcgcatgcca       840
     aaaataagag ggaaaacggc tttgaatctc gatcaccttc tcctatacgt gccagatcag       900
     ctcgatttgt caaacacacg agcaacgcag aagcaatttg attattggta cgacaatgtg       960
     agcagagagt atgaggtgga tgataacaaa atgcaaatac tgctcaatgg tttaatggtt      1020
     tggtgcattg aaaatgggac gtcacccaac attgcaggag aatgggtgat gatggacgga      1080
     gcggagcagg taacattccc aataaaaccg ctcctcgaat atgcgcaacc gacctttaga      1140
     caaattatgg ctcacttcag caacgtggca gaggcataca tcgaaatgcg caatatgaaa      1200
     gagccataca tgccacgtta tggaagaatg cgaaacttga acgacatgag cctggcacgc      1260
     tacgcattcg acttctacga aataacgtcg aaaacaccat cacgcgcaag agagacccac      1320
     atgcaaatga aggcagccgc actgcacggc agcgtcagta acatgtttgg attggatggt      1380
     aatgtagcaa caacgagtga aaacacggaa aggcacacag cgagcgatgt aaacagtaac      1440
     atgcatagcc tcttaggcat gcgaatgtaa tatccactga ggtgtgtgct ggatgagtgt      1500
     atgactcaac cgaacagaac tacgtataat atttaagttt aaatttcatg tctttttatt      1560
     ctacgtaagt cctgtttcga agcagccatg ttagctttct tagtgaggtt ccacctcgtg      1620
     aaatctaatc catggaagcc tagagacaaa aaaaaaaaaa aaaaaaa                    1667
//